Carg03587 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03587
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 1828577 .. 1831183 (+)
RNA-Seq ExpressionCarg03587
SyntenyCarg03587
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCGAAGGCGAAACCCGGGAATTTGTTGCAGAACGAAGATGTTCAGAGCGCGCTTCGGTCCACATATGGGTACTAGAGAGGTCTTAAGTTCCATGAAACCACCATGAATCCAGGGCTCGGATCACCTCTTTGCCTTTTCTCTTCTTAAACCCGACACTGTAATTGCTTCTTCTTCTTCTTCTTCTTCTATTTAATCAGCTTCTAATAGTCACTTTTATTTTGGTTTTGGGATTCATGTTTGAGTTTGGTGTGTTTTGATTCAGGTTAAAAGTGAATGGGGGAATCAATTCTGTTCTCCATGATATCACCGCAGTGGTGAGTTTCTCTCTTTCTAATTTTTTGTTTGTTTTGTTCAAGGAAAGATGAATTTAATGAATGCTTTTAGGTTTTTTATTGTGTTGTGATAAATGTGAACTCTATATTGGGTTCTTTAAATTAATCTGCTGTAGAGTAGTTGATGAACGTTTCTGGATCCATAATTTCGGAGTTTAACTCAATGCAGTTCCTCCTATTAGAGATTGGACAATTCTAGTTAACTTAATTTATGCGCCTTTGTGAGCATTCATGAGCTCCCTTCTTTCTGTCACCTTGTCCATTGTGTTGTGTGGGAGGGGAAGGAAACACATTCCTGAGAGAATCAGTGGGTGGGAGATAGACACTCTGCTCTATGTTTCTTCGTCTCTAACATTGGCCCTCATTTAAAAATTGTTTGGTGGCTGATTTCCTGGTTTGGTCGGGGAGCTCTGTTTCCTTTCCTTTTGACTTCTGTCATTCGTTGTCTCTGATTGGGGAGATTAGTTTTAGGATTGGGGATGGTCGTGTTTGGAATCCAAACTCTTTGGATGAGTTTTCTTGTAAGTTCTTCTTCTTTTGTGTGCTGGACCATTCTTCCATTAGTGAGTCTGTTTTTTATCCCTATTTGGCGGATAAAGATTCCAAAGGAGGTTAAATTCCTTGCTTGGAAAGTTTTACACGGACGAGTTAACACTTTAGATCAGCTTTTGAGGAAGTTTTCCTTGTTAGTTGACCCGTTTTGTTGCATTCTTTGTCGGAAAGGCTGAGGAAAAATTGTATCATATTCTTCTGAGGCGTGAGTTTGCGAGTTCTGTTTGGAGTTGTTTTTTAAGATGTTTGGTTTGGTACCAATATAAGTATAGCTCAACTAGTACAAAATATGTACTATCGACCAAGAGGTTAGAGGTTTGAATCTCCTCTCTTGCGTCTAGTTTAACTCAAAATAGGAAGGTCCTTTGGCTCCAACTAATCAGAACTTTCTTTTGATGTCTTTGATTACAAAGAAAAATACATAAAATGCCATAGATAATGTTTCTTCAGAATGTTTTTTTGTACTGATCTTAAGTGGTATGAATTTAATTGTGATATCCCACATTGGTTGGGGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACTTTTCCCTAGCATACGCGTTTTAAAGCCTTGAGGGGAAGTCCGAAAGAGAAAATCTAAAGAGGACAATATCTGCTAGCAGTGGATCTGGGCCATCACATTAATTCTCCTTTTAACAGTTTTACGGTCATAGCAACCTTTGTCCCAAATGGTGAATTGTTTGCAATCTTTCATGGTCTGGGGCTTGAATTTTAGCACCCGCCTTTTCTTGTTATTTCATTCTCCACATGAAAATGGTTGTCTTCCTATAAAATAAAAAGAAATATGAATGAAGCTTTGTTGACCAACGGTTATGGAATTCTTATGAATCAAATAAACTATGGCATGGAGTGGTTGCTAGTATATGTAGAAAGGATGTACGTGGATGGTCTACAAATACGATGAAGAAAGGGTGTTCAAGAAATCCTTAGTGGAAAATTATCAATTGCAAGGACTTCATTTGAAGCTTTTCTACAATCGGGTAGGTAGTAGAAAGAATGCTTTTTGACGTGATTCTTGGGAAGGTAATAGCTGCTATGCTATCCTTGTGAGATCCCACATGGGTCGGAGAGGGAAAGGGTTGCACATTGGTGGGCGCGTTTTAAAACCTTGAGGGGAAATCTCGGAGGAAAAACCTAAAGAGGACAATATCTGCTAGCGTTGAGCTTGGGCTGTTACACTCCTCAAAGGAAGAACTTATCCGTCTATGACGTCTGTATACGAGCATGCTCGATCTGGTGGGTTTACGGTAGAGTTTGCAGCTTTTTGAGATCATTTTTGGCTTGCATTCGCCCGGAAGTCGGAATTTCTTTTGGTTGATTAGTTCTATGGAGTTCTTGCATCCCTTGGGTTGTGGCAAAAGGAGGCCTAGATCCTTTTCTTAGAGTTCGACAATGCTGGCAAAACGACCTTGCTTCATATGTAAAGATGAGAGATTAGTTCAACACCAGCCGACCGTACATCCAACTTCAGAGGAGTTGAGTATTTGGTAAGATCAAGTTCAAGGTCTTTGTCCTAGGAGGGCTTAGATATCTCGCAGAGTTCGGAAAGATACTATGCTAAGGTGGATGCATTAGTTTATCTGGTCAAATGTCAGCATCCACTAACCTTACCTGTTAGTGTAGCTGAGGGTGATTATAATTGTCTGTTGTATGCAGGTTTTGCTCTTCCATGATTTGCTGAACTCACTGTAA

mRNA sequence

CCACCGAAGGCGAAACCCGGGAATTTGTTGCAGAACGAAGATGTTCAGAGCGCGCTTCGGTCCACATATGGGTTAAAAGTGAATGGGGGAATCAATTCTGTTCTCCATGATATCACCGCAGTGGTTTTGCTCTTCCATGATTTGCTGAACTCACTGTAA

Coding sequence (CDS)

CCACCGAAGGCGAAACCCGGGAATTTGTTGCAGAACGAAGATGTTCAGAGCGCGCTTCGGTCCACATATGGGTTAAAAGTGAATGGGGGAATCAATTCTGTTCTCCATGATATCACCGCAGTGGTTTTGCTCTTCCATGATTTGCTGAACTCACTGTAA

Protein sequence

PPKAKPGNLLQNEDVQSALRSTYGLKVNGGINSVLHDITAVVLLFHDLLNSL
Homology
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BLAST of Carg03587 vs. NCBI nr
Match: KAG7017540.1 (hypothetical protein SDJN02_19405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  PPKAKPGNLLQNEDVQSALRSTYGLKVNGGINSVLHDITAVVLLFHDLLNSL 53
          PPKAKPGNLLQNEDVQSALRSTYGLKVNGGINSVLHDITAVVLLFHDLLNSL
Sbjct: 1  PPKAKPGNLLQNEDVQSALRSTYGLKVNGGINSVLHDITAVVLLFHDLLNSL 52

The following BLAST results are available for this feature:
BLAST of Carg03587 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017540.11.8e-19100.00hypothetical protein SDJN02_19405, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03587 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03587 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03587 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03587-RACarg03587-RAmRNA