Carg03586 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03586
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 1831193 .. 1832663 (+)
RNA-Seq ExpressionCarg03586
SyntenyCarg03586
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCTCAAGTGCTTCTCATGATGGAGTTTCACTTCTCACTCAAAGAAATGAAGACAGCCACACTTCTCGAACTTAGCAACAAAGGACTCAATGATTTCACAGGTCACATAATTTCAAGCAAGGAATCTTTTCCTTTTTCTCTCTTTTTTCCTTTTGGAAATTTTGCAAATTCATCTTTGGCTATAGATTTAGAGCGTCTGATTTGTGCTTGCTTCTGTGAAGACACCTACCCATATATGTAAATTGCAGAGTACCCGTTAAGCAATATTATATGCAAATCATAACGTTGTTGATGATAATGAGTGTAATGTGATATATGTAGTAGTTTATCAAGGCACTTCTTCCCTCATTGATGTTTACAGAAACCAAACACTTTCCCAATAAGTTTCTAGGATCTGTACTGAAACAAGGCAAGAATAACTGGGAAATATAATCAATGAATTGCAATAAGTTGATTCTTATTTTTTTTTTTCAACAAAGTTTCGTACTTCTGATTTAGGACTGTTATTCAATTTTATTGAGAACTATATAAAGTTCATATCAGATTCTAGATGGAGATTTCAGATTGTAGTTTTAGAAAAGTGTGAGTTTTGTCCCCTTGGGAGTGAACGGTTAGCTAAAAGAAAGACGAGCTAGAAGGAAAGATGTAACAACCCAAGCCTGCTGCTAGTAGATATTGTCCGCTTAGGCCCATTACATATTGTCGTCAGCCTCACGGGTTTAAAACGCGTTTACTAAGAAGAGGTTTCTACATCCTTATAAGTAATGCTTCGTTTCTCACTTGCTCTATCCAGATAACTTGATCATTCCACTATTCTTTTGTATTTTTGAAAGGAAAGGAATCGTTTCTGTTTCCTTTCCAAAAAGAAAAAGAAGGGATTGTAGTTTTAGAGATGGCTAGCCTAGACTCTAGATTGTGCTATGATTGCTGCTAAACCAGGAACATGATGAAACTGAGTCTCTTCTACCATTATGTGGCTCAGGATTCAAGCTAATCCGCACTTTCCACAAGTGTTGTGAAGGAAGGGCCTGGCTGGCTGTCTCCTTTCCAGCACTCGAGGTACCTTAAAATTCACAAAGTGCGCAGGAGGGAGGGATGTACAGTGGCACCTGTAAGTTAGCATATCTTGTCTTGTGTCCTTGTAGACAGTTTCAACTTCACTTTTGGTACATTTTATATTTCACTGATTAAGCTAAGCTCTGTGTGTGGGTGTGTGGGGGGCAGGGCGGCACCAATTGGCACAGCAAAAGAAAGGGGGAGGGCTATGCTTTTAGGTACAGCCAGAAGTGGCAGTGACTCAGTTTGGATTCAATTAGTTTATTGACTCTGCTTTCTACATTTGCAGGCTCATTTCAATCTTGTCTTTGGCAATAACTACGAGATTCTTATATTTGTAGGACAATACATTGAACCAAAACTCAAAGCAAATTAGTATTGGATTATTTTTCATTTGATTGCTCAAATGA

mRNA sequence

ATGCCTCCTCAAGTGCTTCTCATGATGGAGTTTCACTTCTCACTCAAAGAAATGAAGACAGCCACACTTCTCGAACTTAGCAACAAAGGACTCAATGATTTCACAGGATTCAAGCTAATCCGCACTTTCCACAAGTGTTGTGAAGGAAGGGCCTGGCTGGCTGTCTCCTTTCCAGCACTCGAGGCTCATTTCAATCTTGTCTTTGGCAATAACTACGAGATTCTTATATTTGTAGGACAATACATTGAACCAAAACTCAAAGCAAATTAGTATTGGATTATTTTTCATTTGATTGCTCAAATGA

Coding sequence (CDS)

ATGCCTCCTCAAGTGCTTCTCATGATGGAGTTTCACTTCTCACTCAAAGAAATGAAGACAGCCACACTTCTCGAACTTAGCAACAAAGGACTCAATGATTTCACAGGATTCAAGCTAATCCGCACTTTCCACAAGTGTTGTGAAGGAAGGGCCTGGCTGGCTGTCTCCTTTCCAGCACTCGAGGCTCATTTCAATCTTGTCTTTGGCAATAACTACGAGATTCTTATATTTGTAGGACAATACATTGAACCAAAACTCAAAGCAAATTAG

Protein sequence

MPPQVLLMMEFHFSLKEMKTATLLELSNKGLNDFTGFKLIRTFHKCCEGRAWLAVSFPALEAHFNLVFGNNYEILIFVGQYIEPKLKAN
Homology
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BLAST of Carg03586 vs. NCBI nr
Match: KAG6580790.1 (hypothetical protein SDJN03_20792, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017541.1 hypothetical protein SDJN02_19406, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MPPQVLLMMEFHFSLKEMKTATLLELSNKGLNDFTGFKLIRTFHKCCEGRAWLAVSFPAL 60
          MPPQVLLMMEFHFSLKEMKTATLLELSNKGLNDFTGFKLIRTFHKCCEGRAWLAVSFPAL
Sbjct: 1  MPPQVLLMMEFHFSLKEMKTATLLELSNKGLNDFTGFKLIRTFHKCCEGRAWLAVSFPAL 60

Query: 61 EAHFNLVFGNNYEILIFVGQYIEPKLKAN 90
          EAHFNLVFGNNYEILIFVGQYIEPKLKAN
Sbjct: 61 EAHFNLVFGNNYEILIFVGQYIEPKLKAN 89

The following BLAST results are available for this feature:
BLAST of Carg03586 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6580790.11.1e-43100.00hypothetical protein SDJN03_20792, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg03586 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03586 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03586 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03586-RACarg03586-RAmRNA