Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTTCTTCACTTGGCGTTAATGGCAGTGTTCAGCATGTTCCCAGAAAGTCCTCCGACCAGCTTTTGAAGAAGTTTGCAGAGGTGGGCTCGGAGTCCGGCGGCGGAAGGAGGCTGTCGACAGTGGTTAAGAGGCGACGGAGGAGGCCGAATGAGGAGTGCGAGAGCCCATCCGGCGGCGGTGTGGTGGAGCGGAAGTGGCTGATTCCGCCGGCGGGGAGGAAATCGGTTGTGCTGAAGAAAATCGGGATTGGAAGTGGCAGTGGAAGGTCTCAGCAGCTGAGGATTAGAGATTTTAGAAACAAATCTTTCCTTGGAGCCATTCAAAAGGTAATTCCATATTTTTTAATTGCATTCACTAGATTATAATTCAATTTTAAAATGAATTAATTTTCTTTTCTTTTCTTTTTTTCTTCTTAATTTAAAAAGTATTTAATAGATAATATTTAGATAAATTGCTCAAATAAGCCTAAAAATATGTATTATCCATAAATATAAAATACATATACTTAAAATTTTATATTAAATTCATGAAATTATTAAATATAAAATGTATTGAAGCTTGTAATTTAATTTTTTAAATTACAATAATAATGATTATATAAATATATATATATATATAATAACGTATTCTTGGGGGGTACGATGCAGACGTGGCGAAGAACAGTGGAAGGGGCATCAAAGGTGTTATTAGAGAAACATTACAACACTCACAGACGTTTGATAAGTGACATTGTCTGA
mRNA sequence
ATGGATTCTTCTTCACTTGGCGTTAATGGCAGTGTTCAGCATGTTCCCAGAAAGTCCTCCGACCAGCTTTTGAAGAAGTTTGCAGAGGTGGGCTCGGAGTCCGGCGGCGGAAGGAGGCTGTCGACAGTGGTTAAGAGGCGACGGAGGAGGCCGAATGAGGAGTGCGAGAGCCCATCCGGCGGCGGTGTGGTGGAGCGGAAGTGGCTGATTCCGCCGGCGGGGAGGAAATCGGTTGTGCTGAAGAAAATCGGGATTGGAAGTGGCAGTGGAAGGTCTCAGCAGCTGAGGATTAGAGATTTTAGAAACAAATCTTTCCTTGGAGCCATTCAAAAGACGTGGCGAAGAACAGTGGAAGGGGCATCAAAGGTGTTATTAGAGAAACATTACAACACTCACAGACGTTTGATAAGTGACATTGTCTGA
Coding sequence (CDS)
ATGGATTCTTCTTCACTTGGCGTTAATGGCAGTGTTCAGCATGTTCCCAGAAAGTCCTCCGACCAGCTTTTGAAGAAGTTTGCAGAGGTGGGCTCGGAGTCCGGCGGCGGAAGGAGGCTGTCGACAGTGGTTAAGAGGCGACGGAGGAGGCCGAATGAGGAGTGCGAGAGCCCATCCGGCGGCGGTGTGGTGGAGCGGAAGTGGCTGATTCCGCCGGCGGGGAGGAAATCGGTTGTGCTGAAGAAAATCGGGATTGGAAGTGGCAGTGGAAGGTCTCAGCAGCTGAGGATTAGAGATTTTAGAAACAAATCTTTCCTTGGAGCCATTCAAAAGACGTGGCGAAGAACAGTGGAAGGGGCATCAAAGGTGTTATTAGAGAAACATTACAACACTCACAGACGTTTGATAAGTGACATTGTCTGA
Protein sequence
MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSGGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGASKVLLEKHYNTHRRLISDIV
Homology
BLAST of Carg03570 vs. NCBI nr
Match:
XP_022983155.1 (uncharacterized protein LOC111481793 [Cucurbita maxima] >KAG7017556.1 hypothetical protein SDJN02_19422, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 276.2 bits (705), Expect = 1.6e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG
Sbjct: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
Query: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA
Sbjct: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
Query: 121 SKVLLEKHYNTHRRLISDIV 141
SKVLLEKHYNTHRRLISDIV
Sbjct: 121 SKVLLEKHYNTHRRLISDIV 140
BLAST of Carg03570 vs. NCBI nr
Match:
XP_023526943.1 (uncharacterized protein LOC111790316 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 274.6 bits (701), Expect = 4.6e-70
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG
Sbjct: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
Query: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA
Sbjct: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
Query: 121 SKVLLEKHYNTHRRLISDIV 141
SKV LEKHYNTHRRLISDIV
Sbjct: 121 SKVFLEKHYNTHRRLISDIV 140
BLAST of Carg03570 vs. NCBI nr
Match:
XP_022935142.1 (uncharacterized protein LOC111442101 [Cucurbita moschata])
HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRR NEECESPSG
Sbjct: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRSNEECESPSG 60
Query: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA
Sbjct: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
Query: 121 SKVLLEKHYNTHRRLISDIV 141
SKVLLEKHYNTHRRLISDIV
Sbjct: 121 SKVLLEKHYNTHRRLISDIV 140
BLAST of Carg03570 vs. NCBI nr
Match:
KAG6580806.1 (putative protein phosphatase 2C 43, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 240.7 bits (613), Expect = 7.4e-60
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTV+KRRRRRPNEECESPSG
Sbjct: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVIKRRRRRPNEECESPSG 60
Query: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA
Sbjct: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
Query: 121 SK 123
SK
Sbjct: 121 SK 122
BLAST of Carg03570 vs. NCBI nr
Match:
XP_008443054.1 (PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo] >KAA0043733.1 uncharacterized protein E6C27_scaffold236G00620 [Cucumis melo var. makuwa] >TYK25399.1 uncharacterized protein E5676_scaffold352G005410 [Cucumis melo var. makuwa])
HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55
Identity = 121/141 (85.82%), Postives = 128/141 (90.78%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRR-PNEECESPS 60
MDSS G+VQHVPRKSSD+LL+KFAEVGSESGGGRRL TVVKRRR+R NEEC+SPS
Sbjct: 1 MDSSI----GNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRKRVNNEECDSPS 60
Query: 61 GGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEG 120
GGGVVERKWLI P GRKSVVLKK+GI G+GRSQQLRIRDFRNKS LGAIQKTWRRTVEG
Sbjct: 61 GGGVVERKWLISPVGRKSVVLKKVGI--GNGRSQQLRIRDFRNKSILGAIQKTWRRTVEG 120
Query: 121 ASKVLLEKHYNTHRRLISDIV 141
ASKVLLEKHYNTHRRLISDIV
Sbjct: 121 ASKVLLEKHYNTHRRLISDIV 135
BLAST of Carg03570 vs. ExPASy TrEMBL
Match:
A0A6J1J4Z4 (uncharacterized protein LOC111481793 OS=Cucurbita maxima OX=3661 GN=LOC111481793 PE=4 SV=1)
HSP 1 Score: 276.2 bits (705), Expect = 7.7e-71
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG
Sbjct: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
Query: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA
Sbjct: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
Query: 121 SKVLLEKHYNTHRRLISDIV 141
SKVLLEKHYNTHRRLISDIV
Sbjct: 121 SKVLLEKHYNTHRRLISDIV 140
BLAST of Carg03570 vs. ExPASy TrEMBL
Match:
A0A6J1F4R1 (uncharacterized protein LOC111442101 OS=Cucurbita moschata OX=3662 GN=LOC111442101 PE=4 SV=1)
HSP 1 Score: 273.1 bits (697), Expect = 6.5e-70
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESPSG 60
MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRR NEECESPSG
Sbjct: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRSNEECESPSG 60
Query: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA
Sbjct: 61 GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGA 120
Query: 121 SKVLLEKHYNTHRRLISDIV 141
SKVLLEKHYNTHRRLISDIV
Sbjct: 121 SKVLLEKHYNTHRRLISDIV 140
BLAST of Carg03570 vs. ExPASy TrEMBL
Match:
A0A5A7TJU8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005410 PE=4 SV=1)
HSP 1 Score: 226.9 bits (577), Expect = 5.4e-56
Identity = 121/141 (85.82%), Postives = 128/141 (90.78%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRR-PNEECESPS 60
MDSS G+VQHVPRKSSD+LL+KFAEVGSESGGGRRL TVVKRRR+R NEEC+SPS
Sbjct: 1 MDSSI----GNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRKRVNNEECDSPS 60
Query: 61 GGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEG 120
GGGVVERKWLI P GRKSVVLKK+GI G+GRSQQLRIRDFRNKS LGAIQKTWRRTVEG
Sbjct: 61 GGGVVERKWLISPVGRKSVVLKKVGI--GNGRSQQLRIRDFRNKSILGAIQKTWRRTVEG 120
Query: 121 ASKVLLEKHYNTHRRLISDIV 141
ASKVLLEKHYNTHRRLISDIV
Sbjct: 121 ASKVLLEKHYNTHRRLISDIV 135
BLAST of Carg03570 vs. ExPASy TrEMBL
Match:
A0A1S3B7W3 (uncharacterized protein LOC103486764 OS=Cucumis melo OX=3656 GN=LOC103486764 PE=4 SV=1)
HSP 1 Score: 226.9 bits (577), Expect = 5.4e-56
Identity = 121/141 (85.82%), Postives = 128/141 (90.78%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRR-PNEECESPS 60
MDSS G+VQHVPRKSSD+LL+KFAEVGSESGGGRRL TVVKRRR+R NEEC+SPS
Sbjct: 1 MDSSI----GNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRKRVNNEECDSPS 60
Query: 61 GGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEG 120
GGGVVERKWLI P GRKSVVLKK+GI G+GRSQQLRIRDFRNKS LGAIQKTWRRTVEG
Sbjct: 61 GGGVVERKWLISPVGRKSVVLKKVGI--GNGRSQQLRIRDFRNKSILGAIQKTWRRTVEG 120
Query: 121 ASKVLLEKHYNTHRRLISDIV 141
ASKVLLEKHYNTHRRLISDIV
Sbjct: 121 ASKVLLEKHYNTHRRLISDIV 135
BLAST of Carg03570 vs. ExPASy TrEMBL
Match:
A0A0A0LGY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G807310 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 6.5e-54
Identity = 120/143 (83.92%), Postives = 127/143 (88.81%), Query Frame = 0
Query: 1 MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEE--CESP 60
MDSS G+VQHVPRKSSD+LL+KFAEVGSESGGGRRL TVVKRRR+R N E C+SP
Sbjct: 1 MDSSI----GNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRKRVNNEEYCDSP 60
Query: 61 SG-GGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTV 120
SG GGVVERKWLI P GRKSVVLKK+GI G+GRSQQLRIRDFRNKS LGAIQKTWRRTV
Sbjct: 61 SGTGGVVERKWLISPVGRKSVVLKKVGI--GNGRSQQLRIRDFRNKSILGAIQKTWRRTV 120
Query: 121 EGASKVLLEKHYNTHRRLISDIV 141
EGASKVLLEKHYNTHRRLISDIV
Sbjct: 121 EGASKVLLEKHYNTHRRLISDIV 137
BLAST of Carg03570 vs. TAIR 10
Match:
AT2G42110.1 (unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )
HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 0
Query: 12 VQHVPRKSSDQLLKKFA---EVGSESGGGRRLSTVVKRRRRRPNEECESPSGGGVVERKW 71
+ HV +KSSD+LL+KFA +V S +R K R + ES + G V ++
Sbjct: 15 ITHVNKKSSDELLRKFADPDDVDESSKSTKRRKKSAKSSSREKGVDIESNTSGLVERKRL 74
Query: 72 LIPPAG-RKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTVEGASKVLLEK 131
L+ PA R+S+ ++++ SG+S RNKS + I KTWR+T+EGAS+V +EK
Sbjct: 75 LLAPASKRRSLFIRQL----ASGKSH------LRNKSLVRTIGKTWRKTMEGASRVFIEK 134
Query: 132 HYNTHRRLISDIV 141
HYN HRRL +D+V
Sbjct: 135 HYNRHRRLTNDVV 137
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022983155.1 | 1.6e-70 | 100.00 | uncharacterized protein LOC111481793 [Cucurbita maxima] >KAG7017556.1 hypothetic... | [more] |
| XP_023526943.1 | 4.6e-70 | 99.29 | uncharacterized protein LOC111790316 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022935142.1 | 1.3e-69 | 99.29 | uncharacterized protein LOC111442101 [Cucurbita moschata] | [more] |
| KAG6580806.1 | 7.4e-60 | 99.18 | putative protein phosphatase 2C 43, partial [Cucurbita argyrosperma subsp. soror... | [more] |
| XP_008443054.1 | 1.1e-55 | 85.82 | PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo] >KAA0043733.1 unc... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1J4Z4 | 7.7e-71 | 100.00 | uncharacterized protein LOC111481793 OS=Cucurbita maxima OX=3661 GN=LOC111481793... | [more] |
| A0A6J1F4R1 | 6.5e-70 | 99.29 | uncharacterized protein LOC111442101 OS=Cucurbita moschata OX=3662 GN=LOC1114421... | [more] |
| A0A5A7TJU8 | 5.4e-56 | 85.82 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3B7W3 | 5.4e-56 | 85.82 | uncharacterized protein LOC103486764 OS=Cucumis melo OX=3656 GN=LOC103486764 PE=... | [more] |
| A0A0A0LGY2 | 6.5e-54 | 83.92 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G807310 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G42110.1 | 2.0e-18 | 40.60 | unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bac... | [more] |
