Carg03565 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03565
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 1954953 .. 1957810 (+)
RNA-Seq ExpressionCarg03565
SyntenyCarg03565
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACCAACCCTGAAGGATCGGTTCAGAATAAAACATCGACATTTCCTCTCTCTTTCCCCAATCGCTCTCTCCTTCAATGTTGGTTTAACTTTTCATCGTGATTTCTGTTTAATTAGGAAGATGGGATTACGCACAATTTCAATCTACAACCATGGTTTTTGGATTTGGATCTTCAGGCGTTTTCATGGTCGCTTCATCGGTTATCGCTAATCAGCTGCCGCGATCCATATGAGAGGCATGGCGGCAATATCATCCCGTTAGTCTCTCGTTTTGTGCTCTGTTATTCCACCACGATTAGATGACTCTTCGCGGAAGTCTCCCCTGGAAAATTTCCGCCACTCGCGTTTTTGGTTGGTAGGTTAATTTGCAGGTTTGTTTCCCCATTTTCGTGAATCTTTTGGTACGTGTTTGTATGTCTTGAATATTGATTTTGCCCCTTCAACTGGATTTGAGTGGTCTTTGACTTGATGGTAGCTCGAGATGGTACCTCCTGTTTTTCTATGCCTTATCGTTGTGTTCTCTAGTGTCGGCTCCGATCGGCGGTAATCGTTTGTTGTTTTGGTACTCCAGCTTTTGGATTTGGGTGTGTTCTGTTTGATATGAACTTGATTTCTTTGACTGAGATCATATTCAATCTGTTGAAACTTTATAATCCATGGATCTGATAATAAATTACTGGCTGTAGTCGTAAGTGCTTTTGTTGTAATTACAATTCTTGAAGTACTCTGCGGGATTCTCCAAATCTTCCATATTTTAATGAAGATCTGCCAGATTGGAGTATGATACTTTCTTATCATAGTAATGGGAAACTGAAGAACAAAATGGCAATGGAGGGGTATCAAGGTGTAGGTGGAGGAGGATTGATCTTCCGTTGGTATATTCATAAACAATGTTTTTGGTTTATGAAATACTCGAGTCTCAGTTACATTAGAGTTGGGAAGAACACCCCCTCTTTGATGAAAATAGAGGTATAATTTTCTAAGGATTTGAATTCTTTTATGGTGTTATCTGTTCCTAGGTTCCCCCCTATGCTTTTCAATTGAGTTCTGGTTTCTACGAGTCCGTTGAAGAGTTGTTCGGACGGTGATCTCTCCTCCGTTAGTAGAGACAACTTTTCTCGGAATCTGGATTTACATTTCGAATTGGAATGTAGGACTTTTTGTCTTTGGATTATTGGATTAATGTGACAATTTTCTTGGAATCTAGATTTACATTTCAAATTGGAAACTAGGATTTGTGTTTGGATTGTTGGATTAATGTTCTGTTAGCTATTGTGTTCGATGTTCTCTTGCTACAAGTTAGAAGACTGGTAAAGACAACTATATAAAGCTTGAATTTTGACTGTAATTAAGCAGCTGGTTAGGAGCTGCTTTTTTTATGTCAGTTTTCTATTTCTAAGGACAAAACTAATGAACACATATTTGCTCTTATAGTTCGTATGAATAGTTTTCCTGATATATTGTTATTGTTCACTTGCCCCTTTCATTCTCGTTTATCAGTTCCAATTTTGGAGGAGGGAGGGTATGGCTGACAAATTAGCAAAAGACATTAGATGGAAACCTTAGAAAAGGGGGTGTCATGATCTGAATTCCGAGTAGGTTAGTGTAACAGTTCAAGCTCACCGCTAGTAGATATTGTCCACTTTTGCCTGTTAGGTATCATCATTAGCCTCACAGTTTCAAAACGCGTCTACTAGGGAGAGGTGGACACCCTTTTATAAGGAATGTTTCCCCTTTCCAACCGATGTAGAATCTCACAATTCACCCCTTTAGGGGCCCAGCATCCTCACTAGCACACCGATCGGTGTTTGACTCTAATATCATTTGTAATAATTCAAGCCTATTGTTAGCAGATATGATCCGCTTTGGCCTGTTACGTATTGTTGTCAACCTCACAGTTTTAAAATGCGTCTATTAGAGAGAGCTTTCCACCCTCTTACAAGAAATGCTTCGTTCCATTCTCTAACCGACGTGGGATCTCACATTTAGCGGGTTGTTCTTAATCCTATTAACTTATTCACTTTTCTGCAATTTTGATTCATTAGAAGCGTTTCCTAGAGTTGGAAGATTCAATGTTCTTGTTTGATTTGCTCTAATTATCATATTGAATTTGATCTAGATAGAAAACCCACGATCCCTGATATGTTTCAAGTTGCATATATACAAGGGCAACTCAAATTCTTTGCCTAACCCAATTCATTTCCCCACACTTAAAATTATTTTACTGATTCATTTTACTTTGGCCTGCAGTTTCGATGGATTGACGAACACAAATATTGACACACCAGCAAAAGGAATTGGAAAGAATTCAGAGTAATGTAGCCGGAAATGAAGCCATTAATGCAATTACAAGCTACAGAGTGCTAAATCTTCACTATGTTGTTTACCCTATCCCATCTAGTGCCATAGATATCTACAAGAACAGGCAATCCCTCCCCTTCACTGGAAGAGAAAACATTAAAAAAAAAAAAAAAAACAAAAAAACAAAAGAATTTGATCCACTAACATAGGATAATTTTGGTACAATTCTATACAGATTTGGCACTGGCACTTGGTAGCTCAAGTATCGTTGTTTTTGTCAACTAATTGATCATGCACGTTTGGCTGCTTCCCTTTCTGCTGTGCATTAAAACAAAGACGATTAGATATAAACATCCATCTGGCTGAATTCAACAATCGGTAAACGAATTATCTCCAGTTTCTCTAATTTGGTAGAATCATGAATACAATACAGAGGAAAATATTAAACGAATTTGCTCGAGTCCCTGTCGTGCTGTAATCCGAGTTTCGTTTATCTCTATTTGTTTCTTCCACAAGAACGTTTAACATTCGATGTCAGTATGTGAAAAAAAAGA

mRNA sequence

ATGTCGACCAACCCTGAAGGATCGGAAGATGGGATTACGCACAATTTCAATCTACAACCATGGTTTTTGGATTTGGATCTTCAGGCGTTTTCATGGTCGCTTCATCGGTTATCGCTAATCAGCTGCCGCGATCCATATGAGAGGCATGGCGGCAATATCATCCCTTTCGATGGATTGACGAACACAAATATTGACACACCAGCAAAAGGAATTGGAAAGAATTCAGAGTAATGTAGCCGGAAATGAAGCCATTAATGCAATTACAAGCTACAGAGTGCTAAATCTTCACTATGTTGTTTACCCTATCCCATCTAGTGCCATAGATATCTACAAGAACAGGCAATCCCTCCCCTTCACTGGAAGAGAAAACATTAAAAAAAAAAAAAAAAACAAAAAAACAAAAGAATTTGATCCACTAACATAGGATAATTTTGGTACAATTCTATACAGATTTGGCACTGGCACTTGGTAGCTCAAGTATCGTTGTTTTTGTCAACTAATTGATCATGCACGTTTGGCTGCTTCCCTTTCTGCTGTGCATTAAAACAAAGACGATTAGATATAAACATCCATCTGGCTGAATTCAACAATCGGTAAACGAATTATCTCCAGTTTCTCTAATTTGGTAGAATCATGAATACAATACAGAGGAAAATATTAAACGAATTTGCTCGAGTCCCTGTCGTGCTGTAATCCGAGTTTCGTTTATCTCTATTTGTTTCTTCCACAAGAACGTTTAACATTCGATGTCAGTATGTGAAAAAAAAGA

Coding sequence (CDS)

ATGTCGACCAACCCTGAAGGATCGGAAGATGGGATTACGCACAATTTCAATCTACAACCATGGTTTTTGGATTTGGATCTTCAGGCGTTTTCATGGTCGCTTCATCGGTTATCGCTAATCAGCTGCCGCGATCCATATGAGAGGCATGGCGGCAATATCATCCCTTTCGATGGATTGACGAACACAAATATTGACACACCAGCAAAAGGAATTGGAAAGAATTCAGAGTAA

Protein sequence

MSTNPEGSEDGITHNFNLQPWFLDLDLQAFSWSLHRLSLISCRDPYERHGGNIIPFDGLTNTNIDTPAKGIGKNSE
Homology
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BLAST of Carg03565 vs. NCBI nr
Match: KAG7017561.1 (hypothetical protein SDJN02_19427, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 2.5e-38
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MSTNPEGSEDGITHNFNLQPWFLDLDLQAFSWSLHRLSLISCRDPYERHGGNIIPFDGLT 60
          MSTNPEGSEDGITHNFNLQPWFLDLDLQAFSWSLHRLSLISCRDPYERHGGNIIPFDGLT
Sbjct: 1  MSTNPEGSEDGITHNFNLQPWFLDLDLQAFSWSLHRLSLISCRDPYERHGGNIIPFDGLT 60

Query: 61 NTNIDTPAKGIGKNSE 77
          NTNIDTPAKGIGKNSE
Sbjct: 61 NTNIDTPAKGIGKNSE 76

The following BLAST results are available for this feature:
BLAST of Carg03565 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017561.12.5e-38100.00hypothetical protein SDJN02_19427, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03565 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03565 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03565 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03565-RACarg03565-RAmRNA