Carg03531 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03531
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description(thale cress) hypothetical protein
LocationCarg_Chr14: 2161569 .. 2161841 (-)
RNA-Seq ExpressionCarg03531
SyntenyCarg03531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAATTTGTGGAATTGTTGGATGTAGGAGTGAGAATGGCGGCGAGATTTCACGCTCACTGTCCCCAAACTGCTCGGCTTTACTATCATCCTCCCTCCGATCACGACGGCGACAACCACCACAACTATCTGCATCAGTTTTTTCAGGCCAGCGATGGCTTCCGGCACGGCGGACACTCGACGGACCTGGTGACGGGCTGTGGAGTGGAGACGGTAGCTATGGCTAGGGGTTTTGATGCCGAGATCGTGTTTCATACGGCAGATTTTTGA

mRNA sequence

ATGGCGAAATTTGTGGAATTGTTGGATGTAGGAGTGAGAATGGCGGCGAGATTTCACGCTCACTGTCCCCAAACTGCTCGGCTTTACTATCATCCTCCCTCCGATCACGACGGCGACAACCACCACAACTATCTGCATCAGTTTTTTCAGGCCAGCGATGGCTTCCGGCACGGCGGACACTCGACGGACCTGGTGACGGGCTGTGGAGTGGAGACGGTAGCTATGGCTAGGGGTTTTGATGCCGAGATCGTGTTTCATACGGCAGATTTTTGA

Coding sequence (CDS)

ATGGCGAAATTTGTGGAATTGTTGGATGTAGGAGTGAGAATGGCGGCGAGATTTCACGCTCACTGTCCCCAAACTGCTCGGCTTTACTATCATCCTCCCTCCGATCACGACGGCGACAACCACCACAACTATCTGCATCAGTTTTTTCAGGCCAGCGATGGCTTCCGGCACGGCGGACACTCGACGGACCTGGTGACGGGCTGTGGAGTGGAGACGGTAGCTATGGCTAGGGGTTTTGATGCCGAGATCGTGTTTCATACGGCAGATTTTTGA

Protein sequence

MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGHSTDLVTGCGVETVAMARGFDAEIVFHTADF
Homology
BLAST of Carg03531 vs. NCBI nr
Match: KAG6580839.1 (hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017595.1 hypothetical protein SDJN02_19461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 6.7e-46
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
          MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH
Sbjct: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60

Query: 61 STDLVTGCGVETVAMARGFDAEIVFHTADF 91
          STDLVTGCGVETVAMARGFDAEIVFHTADF
Sbjct: 61 STDLVTGCGVETVAMARGFDAEIVFHTADF 90

BLAST of Carg03531 vs. NCBI nr
Match: XP_008443147.1 (PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo] >KAA0043681.1 uncharacterized protein E6C27_scaffold236G00060 [Cucumis melo var. makuwa] >TYK25450.1 uncharacterized protein E5676_scaffold352G005960 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-31
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 0

Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHH--NYLHQFFQASDGFRHG 60
          M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHD D+HH  +YLHQ FQA DG RHG
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60

Query: 61 GHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
          GHST+LVT  G++T+A    FDAE VFH+ADF
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

BLAST of Carg03531 vs. NCBI nr
Match: KAG7027749.1 (hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 69/86 (80.23%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGD--NHHNYLHQFFQASDGFRHG 60
          M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHDGD  +HHNY H  FQA DG RH 
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 60

Query: 61 GHSTDLVTGCGVETVAMARGFDAEIV 85
          G STDLV  CGV+TVAMARG DAE+V
Sbjct: 61 GPSTDLVEACGVDTVAMARGSDAEVV 86

BLAST of Carg03531 vs. NCBI nr
Match: KAG6596209.1 (hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 69/86 (80.23%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 1   MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGD--NHHNYLHQFFQASDGFRHG 60
           M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHDGD  +HHNY H  FQA DG RH 
Sbjct: 36  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGDHHHHHNYFHHVFQAYDGGRHA 95

Query: 61  GHSTDLVTGCGVETVAMARGFDAEIV 85
           G STDLV  CGV+TVAMARG DAE+V
Sbjct: 96  GPSTDLVEACGVDTVAMARGSDAEVV 121

BLAST of Carg03531 vs. NCBI nr
Match: KGN59359.1 (hypothetical protein Csa_002350 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 5.7e-29
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 1   MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGD---NHHNYLHQFFQASDGFRH 60
           M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHD D   +HH+YLHQ FQA D    
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYD---- 94

Query: 61  GGHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
           GGHST+LVT  G++TVAM   FDAE VFH+ADF
Sbjct: 95  GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 123

BLAST of Carg03531 vs. ExPASy TrEMBL
Match: A0A5A7TQ55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005960 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.7e-32
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 0

Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHH--NYLHQFFQASDGFRHG 60
          M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHD D+HH  +YLHQ FQA DG RHG
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60

Query: 61 GHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
          GHST+LVT  G++T+A    FDAE VFH+ADF
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

BLAST of Carg03531 vs. ExPASy TrEMBL
Match: A0A1S3B7E5 (uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.7e-32
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 0

Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHH--NYLHQFFQASDGFRHG 60
          M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHD D+HH  +YLHQ FQA DG RHG
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDHHHHQHYLHQIFQAYDGGRHG 60

Query: 61 GHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
          GHST+LVT  G++T+A    FDAE VFH+ADF
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

BLAST of Carg03531 vs. ExPASy TrEMBL
Match: A0A0A0LEL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.7e-29
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 1   MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGD---NHHNYLHQFFQASDGFRH 60
           M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHD D   +HH+YLHQ FQA D    
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYD---- 94

Query: 61  GGHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
           GGHST+LVT  G++TVAM   FDAE VFH+ADF
Sbjct: 95  GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 123

BLAST of Carg03531 vs. ExPASy TrEMBL
Match: A0A6J1DN79 (uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021559 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.7e-27
Identity = 71/93 (76.34%), Postives = 73/93 (78.49%), Query Frame = 0

Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
          MAK VELLDVGVRMAARFHAHCPQTARLYYHPPSDHD D HH YLHQ   A DG   GGH
Sbjct: 1  MAKLVELLDVGVRMAARFHAHCPQTARLYYHPPSDHD-DQHH-YLHQILHAYDG---GGH 60

Query: 61 ST-DLVTGCGVETV--AMARGFDAEIVFHTADF 91
          ST   V+GCG+ET   A AR FD EIVFHTADF
Sbjct: 61 STAHQVSGCGIETAARARARSFDTEIVFHTADF 88

BLAST of Carg03531 vs. ExPASy TrEMBL
Match: A0A059DI68 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02353 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFR 57
          M K+VELLD+GVRMAARFH+HCPQTARLYYHPPS+HD  +HH++ H    A DG R
Sbjct: 1  MGKYVELLDLGVRMAARFHSHCPQTARLYYHPPSNHDDLHHHDHHHSSCGAGDGPR 56

BLAST of Carg03531 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
          M K+ E+LDVGVR+AARFH+HCPQTARLYYHPPSD+   +HH  +            G +
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSDN--HHHHGGVKDLIGGGGVLGSGQN 60

Query: 61 STDLVTGCGVET 73
          ST LV G G  T
Sbjct: 61 STGLVGGLGTGT 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6580839.16.7e-46100.00hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008443147.11.6e-3176.09PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo] >KAA0043681.1 unc... [more]
KAG7027749.11.3e-3080.23hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6596209.11.3e-3080.23hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN59359.15.7e-2974.19hypothetical protein Csa_002350 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TQ557.7e-3276.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7E57.7e-3276.09uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=... [more]
A0A0A0LEL32.7e-2974.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1[more]
A0A6J1DN795.7e-2776.34uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A059DI681.2e-1369.64Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02353 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT3G57450.11.4e-1454.17unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33983:SF13SUBFAMILY NOT NAMEDcoord: 1..89
NoneNo IPR availablePANTHERPTHR33983OS07G0185900 PROTEINcoord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03531-RACarg03531-RAmRNA