Carg03412 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03412
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Peroxidase
Location	Carg_Chr20: 1471355 .. 1471573 (-)
RNA-Seq Expression	Carg03412
Synteny	Carg03412

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATACTGTTTATTTCACGAATCTTCAGAAGAAATTAGGGCTTCTTTCGACGGATCAAGCGCTGTTTTCGGATGAGAGAACTTCGTTTTTGGATTTGGTGGCGAATCAACCGAAACATCGCCATCACCAAAACATCGCGACAACCGGTGCAACGGACCTGATTCCGGAGCCGTATAATGGCGGTGACTGCGGCGGGGGCACTGGCGGCGTTTGA

mRNA sequence

ATGTTCGATACTGTTTATTTCACGAATCTTCAGAAGAAATTAGGGCTTCTTTCGACGGATCAAGCGCTGTTTTCGGATGAGAGAACTTCGTTTTTGGATTTGGTGGCGAATCAACCGAAACATCGCCATCACCAAAACATCGCGACAACCGGTGCAACGGACCTGATTCCGGAGCCGTATAATGGCGGTGACTGCGGCGGGGGCACTGGCGGCGTTTGA

Coding sequence (CDS)

ATGTTCGATACTGTTTATTTCACGAATCTTCAGAAGAAATTAGGGCTTCTTTCGACGGATCAAGCGCTGTTTTCGGATGAGAGAACTTCGTTTTTGGATTTGGTGGCGAATCAACCGAAACATCGCCATCACCAAAACATCGCGACAACCGGTGCAACGGACCTGATTCCGGAGCCGTATAATGGCGGTGACTGCGGCGGGGGCACTGGCGGCGTTTGA

Protein sequence

MFDTVYFTNLQKKLGLLSTDQALFSDERTSFLDLVANQPKHRHHQNIATTGATDLIPEPYNGGDCGGGTGGV

Homology

[Close]

BLAST of Carg03412 vs. NCBI nr
Match: KAG6570604.1 (hypothetical protein SDJN03_29519, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010456.1 hypothetical protein SDJN02_27249, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MFDTVYFTNLQKKLGLLSTDQALFSDERTSFLDLVANQPKHRHHQNIATTGATDLIPEPY 60
          MFDTVYFTNLQKKLGLLSTDQALFSDERTSFLDLVANQPKHRHHQNIATTGATDLIPEPY
Sbjct: 1  MFDTVYFTNLQKKLGLLSTDQALFSDERTSFLDLVANQPKHRHHQNIATTGATDLIPEPY 60

Query: 61 NGGDCGGGTGGV 73
          NGGDCGGGTGGV
Sbjct: 61 NGGDCGGGTGGV 72

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BLAST of Carg03412 vs. NCBI nr
Match: XP_038902015.1 (peroxidase 7-like [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-08
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFDT YF NLQKKLGLL+TDQALFSDERT SF+DL+ANQP
Sbjct: 264 MFDTAYFKNLQKKLGLLATDQALFSDERTSSFVDLMANQP 303

[Close]

BLAST of Carg03412 vs. NCBI nr
Match: XP_004140021.2 (peroxidase 7 [Cucumis sativus] >KGN46783.1 hypothetical protein Csa_020672 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFDT YFTNL+KKLGLL TDQAL SDERT SF+DL+ANQP
Sbjct: 265 MFDTAYFTNLEKKLGLLVTDQALVSDERTSSFVDLMANQP 304

[Close]

BLAST of Carg03412 vs. NCBI nr
Match: XP_022149624.1 (peroxidase 7-like [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFD+ YFTNLQ KLGLLSTDQAL SDERT SF+DL+ANQP
Sbjct: 91  MFDSAYFTNLQNKLGLLSTDQALVSDERTSSFVDLMANQP 130

[Close]

BLAST of Carg03412 vs. NCBI nr
Match: XP_023006816.1 (peroxidase 7-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-07
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFDT YF NLQKKLGLL+TDQAL SDERT SF+DL+ANQP
Sbjct: 262 MFDTAYFKNLQKKLGLLTTDQALQSDERTSSFVDLMANQP 301

[Close]

BLAST of Carg03412 vs. ExPASy TrEMBL
Match: A0A0A0KB75 (Peroxidase OS=Cucumis sativus OX=3659 GN=Csa_6G134900 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFDT YFTNL+KKLGLL TDQAL SDERT SF+DL+ANQP
Sbjct: 265 MFDTAYFTNLEKKLGLLVTDQALVSDERTSSFVDLMANQP 304

[Close]

BLAST of Carg03412 vs. ExPASy TrEMBL
Match: A0A6J1D7K8 (peroxidase 7-like OS=Momordica charantia OX=3673 GN=LOC111018010 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFD+ YFTNLQ KLGLLSTDQAL SDERT SF+DL+ANQP
Sbjct: 91  MFDSAYFTNLQNKLGLLSTDQALVSDERTSSFVDLMANQP 130

[Close]

BLAST of Carg03412 vs. ExPASy TrEMBL
Match: A0A6J1KYU1 (Peroxidase OS=Cucurbita maxima OX=3661 GN=LOC111499486 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFDT YF NLQKKLGLL+TDQAL SDERT SF+DL+ANQP
Sbjct: 262 MFDTAYFKNLQKKLGLLTTDQALQSDERTSSFVDLMANQP 301

[Close]

BLAST of Carg03412 vs. ExPASy TrEMBL
Match: A0A5D3B9K4 (Peroxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00310 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFDT YFTNL+KKLGLL TDQAL SDERT SF++L+ANQP
Sbjct: 265 MFDTAYFTNLEKKLGLLMTDQALISDERTSSFVNLMANQP 304

[Close]

BLAST of Carg03412 vs. ExPASy TrEMBL
Match: A0A1S3C2U4 (Peroxidase OS=Cucumis melo OX=3656 GN=LOC103496270 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MFDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVANQP 40
           MFDT YFTNL+KKLGLL TDQAL SDERT SF++L+ANQP
Sbjct: 265 MFDTAYFTNLEKKLGLLMTDQALISDERTSSFVNLMANQP 304

[Close]

BLAST of Carg03412 vs. TAIR 10
Match: AT2G18980.1 (Peroxidase superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 0


Query: 2   FDTVYFTNLQKKLGLLSTDQALFSDERT 30
           FD  YF NLQK +GL ++DQ LFSDER+
Sbjct: 250 FDNAYFKNLQKGMGLFTSDQVLFSDERS 277

[Close]

BLAST of Carg03412 vs. TAIR 10
Match: AT3G28200.1 (Peroxidase superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 5.4e-04
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 2   FDTVYFTNLQKKLGLLSTDQALFSDERTS-FLDLVA 37
           FD +Y+ NL+K LGLL +D  L+SD RT  F+DL A
Sbjct: 243 FDNMYYQNLKKGLGLLESDHGLYSDPRTRYFVDLYA 278

[Close]

BLAST of Carg03412 vs. TAIR 10
Match: AT5G40150.1 (Peroxidase superfamily protein )

HSP 1 Score: 40.0 bits (92), Expect = 9.2e-04
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 2   FDTVYFTNLQKKLGLLSTDQALFSDERT-SFLDLVA 37
           FD +YF N+ K LGLL +D  LFSD RT  F++L A
Sbjct: 255 FDNMYFQNIPKGLGLLESDHGLFSDPRTRPFVELYA 290

The following BLAST results are available for this feature:

BLAST of Carg03412 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570604.1	8.8e-33	100.00	hypothetical protein SDJN03_29519, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038902015.1	3.4e-08	85.00	peroxidase 7-like [Benincasa hispida]	[more]
XP_004140021.2	2.2e-07	82.50	peroxidase 7 [Cucumis sativus] >KGN46783.1 hypothetical protein Csa_020672 [Cucu...	[more]
XP_022149624.1	2.2e-07	82.50	peroxidase 7-like [Momordica charantia]	[more]
XP_023006816.1	3.7e-07	82.50	peroxidase 7-like [Cucurbita maxima]	[more]

BLAST of Carg03412 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg03412 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB75	1.1e-07	82.50	Peroxidase OS=Cucumis sativus OX=3659 GN=Csa_6G134900 PE=3 SV=1	[more]
A0A6J1D7K8	1.1e-07	82.50	peroxidase 7-like OS=Momordica charantia OX=3673 GN=LOC111018010 PE=3 SV=1	[more]
A0A6J1KYU1	1.8e-07	82.50	Peroxidase OS=Cucurbita maxima OX=3661 GN=LOC111499486 PE=3 SV=1	[more]
A0A5D3B9K4	2.4e-07	80.00	Peroxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00310 PE=...	[more]
A0A1S3C2U4	2.4e-07	80.00	Peroxidase OS=Cucumis melo OX=3656 GN=LOC103496270 PE=3 SV=1	[more]

BLAST of Carg03412 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18980.1	1.9e-04	64.29	Peroxidase superfamily protein	[more]
AT3G28200.1	5.4e-04	55.56	Peroxidase superfamily protein	[more]
AT5G40150.1	9.2e-04	55.56	Peroxidase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002016	Haem peroxidase	PFAM	PF00141	peroxidase	coord: 2..30 e-value: 5.0E-5 score: 23.1
None	No IPR available	GENE3D	1.10.420.10	Peroxidase, domain 2	coord: 1..47 e-value: 8.9E-7 score: 31.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..72
IPR010255	Haem peroxidase superfamily	SUPERFAMILY	48113	Heme-dependent peroxidases	coord: 2..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03412-RA	Carg03412-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0009505	plant-type cell wall
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004601	peroxidase activity