Carg03394 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03394
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 1575715 .. 1577322 (+)
RNA-Seq ExpressionCarg03394
SyntenyCarg03394
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACAGGACAAAGGAGCAACTTGGTTATGTTGTCCAATGCAGCCCACGGGTAACATACCGCATATATGGTTTCTGTTTCGTCCTGTTCCTTTAATCATCTCGGAAGTACCACGTCCCAGATCTTTTGGAAGAGAGGGGAGGGTAGAAAAACTTTATATATCTTTCGCGCTTGGAAGAATTACTGGTCCAGGTGAGCCCTTTCTGCAATTGCTGTCACTATCATTTATGTGTGCTTTTCATTAGTATGTGGTTATCATCTATATTTTCATCATAGTGAGCATTAACTAGGAACGATGGGCCGTCCATGTCATTCTCACTTGTTTTAATGTAGTTGTGTGTAGATAGGTCAAGGCTGTTCCCGTAGAGTTATCTCCGCTGGTGGAGGGAGTCTCAGCTCGTGTTGACTGATATATTGAGAGTTTCATGTTGTTATCAAAACTAGCTGATCGAGGTCTCAATGGTCTCGGGGAGTTTTTAATTTCGGGAGCCCAAAGGAAGTGTTTTTGTGGTGAAGCCGGGATTTTTGTACTTTATTCTTATGTTGGGGCCATTTGGGCGCTGAGGGATGGTGAGGTAAATAATGTCAATACTTGCGGTGTTGTACATGAGACCCCAAGTCCACCGCGGGCAAGCTATTGTCCTCTGGCTTTGGGCTTTCCCTTTGAGCGCTTCCTCTCAAGGTTTTTTGAGGGAAAGATGCGCCTCGTTCTAAGGAGAGGGTTTCCATATTAGCCCCCTTATAAGAATGCTTTTCCCCTCTCCTAACTACCGTGATGGTAGGGATAATCTTCAGCACATCCATCCGTTCCGCTTTCGATGCCATAGGCGCCCTCGCTGGACTGCACATTCCTCTCTCCAACCTTCGATGTTTGGGAATTCGTCACACTTTCGAGTCATATTAGCTCCTTTTAATAGATTCGCTCATTTCTCTTTAGGCTTTGTCAATGTTTGTTTCTGGCGCTTTGGGGGACAAAAGTGAGGGCTTACTGTGTAGAGAAGTGTATTGTCTATGTGGTAGGGTCCAGTCTTGGTGTTTGGTAATTTTTCTATGGATTATTATTTATTGTTGCATACAGCACCATTAGTAGTAGTTTCATTTACTCTTTTCTCACAAGAAAATGGCAAGTTCAGAGTATTTAGGCATGGCGGTTGCGTTCTTGTCATTTCAACAGCATAATCAACTCCCTAGAGAGACCAGGCGAACTTTGGCGGGCAAACTATACCCTTACTGCGAGAACAACTAATTGCTAAGAGGACTATATTGGTTACTTTTAGCATAACATAATCAAGTATTACAATAACTCTTGAAAGGGATTTGTTGTTTTTACTAGACCCCCAGGGATGTAGGCGATCTCAGAAGGAGGAGAGGTTATGTTGTTTATTTAGTTAGAATTGGGATAAAAGAATCTGTGCACACTTATATCAGCTGCAGAGATTCGGCTGGAGAAGGTTCCTTCACTCTCTTTTGAGTCAGCCAATGGTTGGTTTGTTAGCAAGCAAGGCTCTAGTACAGAGAGAGAGATAAATGTTAGGTCAGAGTCAGAGAGTGGCATAGAGCCTATTGGAGTACCTCAAGGGCTAATAGGCCGCTTTTGGGAATGTTGA

mRNA sequence

ATGGTACAGGACAAAGGAGCAACTTGGTTATGTTGTCCAATGCAGCCCACGGGTAACATACCGCATATATGGTTTCTGTTTCGTCCTGTTCCTTTAATCATCTCGGAAGTACCACGTCCCAGATCTTTTGGAAGAGAGGGGAGGGTAGAAAAACTTTATATATCTTTCGCGCTTGGAAGAATTACTGGTCCAGAGATTCGGCTGGAGAAGGTTCCTTCACTCTCTTTTGAGTCAGCCAATGGTTGGTTTGTTAGCAAGCAAGGCTCTAGTACAGAGAGAGAGATAAATGTTAGGTCAGAGTCAGAGAGTGGCATAGAGCCTATTGGAGTACCTCAAGGGCTAATAGGCCGCTTTTGGGAATGTTGA

Coding sequence (CDS)

ATGGTACAGGACAAAGGAGCAACTTGGTTATGTTGTCCAATGCAGCCCACGGGTAACATACCGCATATATGGTTTCTGTTTCGTCCTGTTCCTTTAATCATCTCGGAAGTACCACGTCCCAGATCTTTTGGAAGAGAGGGGAGGGTAGAAAAACTTTATATATCTTTCGCGCTTGGAAGAATTACTGGTCCAGAGATTCGGCTGGAGAAGGTTCCTTCACTCTCTTTTGAGTCAGCCAATGGTTGGTTTGTTAGCAAGCAAGGCTCTAGTACAGAGAGAGAGATAAATGTTAGGTCAGAGTCAGAGAGTGGCATAGAGCCTATTGGAGTACCTCAAGGGCTAATAGGCCGCTTTTGGGAATGTTGA

Protein sequence

MVQDKGATWLCCPMQPTGNIPHIWFLFRPVPLIISEVPRPRSFGREGRVEKLYISFALGRITGPEIRLEKVPSLSFESANGWFVSKQGSSTEREINVRSESESGIEPIGVPQGLIGRFWEC
Homology
[Close]
BLAST of Carg03394 vs. NCBI nr
Match: KAG7010473.1 (hypothetical protein SDJN02_27267, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.6 bits (662), Expect = 1.3e-65
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MVQDKGATWLCCPMQPTGNIPHIWFLFRPVPLIISEVPRPRSFGREGRVEKLYISFALGR 60
           MVQDKGATWLCCPMQPTGNIPHIWFLFRPVPLIISEVPRPRSFGREGRVEKLYISFALGR
Sbjct: 1   MVQDKGATWLCCPMQPTGNIPHIWFLFRPVPLIISEVPRPRSFGREGRVEKLYISFALGR 60

Query: 61  ITGPEIRLEKVPSLSFESANGWFVSKQGSSTEREINVRSESESGIEPIGVPQGLIGRFWE 120
           ITGPEIRLEKVPSLSFESANGWFVSKQGSSTEREINVRSESESGIEPIGVPQGLIGRFWE
Sbjct: 61  ITGPEIRLEKVPSLSFESANGWFVSKQGSSTEREINVRSESESGIEPIGVPQGLIGRFWE 120

Query: 121 C 122
           C
Sbjct: 121 C 121

The following BLAST results are available for this feature:
BLAST of Carg03394 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010473.11.3e-65100.00hypothetical protein SDJN02_27267, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03394 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03394 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03394 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03394-RACarg03394-RAmRNA