Carg03198 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03198
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	(thale cress) hypothetical protein
Location	Carg_Chr20: 2601736 .. 2603015 (-)
RNA-Seq Expression	Carg03198
Synteny	Carg03198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGGAAGCTGAAGTTTCTCAGTTTAAGAGATTAGCTGCAAAAGTGTTATGATTTGCTCGTACTTGTGGATTTTTGTCACTTTCATAATTACAGAAGTTTTCATTTCACATTTCGAGTTATGTAGATAACTATGGAACTGGTCATTGTGATATTGTCCTTGTTTTCAATATTATCATAATGTTCTCAAAGTCAGAGTATCTGATATATTTGTTTCCATCAAATATATTGTCGGCAAAAAGTTTGGAAGATGTTCTTATCAATTGAGCATTGTTCATTGTATATAGAGTTGGTGTCTCTGAGATCCCACATCGGTTAGGGAGGAGAACGAAATATTCTTTATAAGGGTGTAGAAACCTCTCCTAGCTGATGCGTTTTAAAATCTTTGAGAGGAAACCTGAAAGCAAAGGTTAAAAAATGACAATATCTGCTAGTGGTAGGTTTTGGCCGTTACGGTGTTGGTAGAGGTACTCTTGTTGTCAATATATAATGTGTCAAGTATGGTATATCTAGCATTCTGTTGAGCCTTGATTTGATTTTATTCCTGTTGAGCATTTCCTTTCATTCGTCAATTCAAGGTGGTTGGTGCTTTCTTGTAAGACAACTTTGTAGCTTAAGTTTACAGAATATCAATTGCTGTCGGCCTCACAGTTCTGTCTCTAAAATGTTCCTCTTCTTTTCCTTGCTGTCTTGGTTCTTGTGTTTTGTTCTCTCCTTTTCCTTTTTCCCTGATGATGTGCACGTAAAGCCTTCTTGTTGCGCTTTTTAGAACCAAAAGATCCATCTTTTATACTAAAACTAAAAAAAAGGGAGCAATCTGTCGCATTTGCCAACTAGTTTCTGCCCTGCTTACTTCCAAACGGCAGACACATATTCCTATTAGAATTACTTGAAATTTTACCATATTGGATTTCTTTCTGGTATAATTTTCACTCATTTTGTAGGTGTTTGTATTCAGATCACTTGCCGAAAACCCGATGACACGACGGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTAAGTACATGAACTCATGGCTGGTACTGACAATTTTATGCATTTGAACGAATGAATTTGCACGAGTTAATGTGAATAGGATTGATCATCCAGGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAAGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

mRNA sequence

ATGGAGATGGAAGCTGAAGTTTCTCAGTTTAAGAGATTAGCTGCAAAAGTGTTTGTATTCAGATCACTTGCCGAAAACCCGATGACACGACGGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAAGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

Coding sequence (CDS)

ATGGAGATGGAAGCTGAAGTTTCTCAGTTTAAGAGATTAGCTGCAAAAGTGTTTGTATTCAGATCACTTGCCGAAAACCCGATGACACGACGGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAAGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

Protein sequence

MEMEAEVSQFKRLAAKVFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK

Homology

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: KAG7010668.1 (hypothetical protein SDJN02_27463, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MEMEAEVSQFKRLAAKVFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPV 60
          MEMEAEVSQFKRLAAKVFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPV
Sbjct: 1  MEMEAEVSQFKRLAAKVFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPV 60

Query: 61 IDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK 96
          IDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK
Sbjct: 61 IDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK 95

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: KAG6570826.1 (hypothetical protein SDJN03_29741, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.4 bits (407), Expect = 3.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 17  VFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGP 76
           VFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGP
Sbjct: 123 VFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGP 182

Query: 77  YINTGSRDVGPDHQTYTKK 96
           YINTGSRDVGPDHQTYTKK
Sbjct: 183 YINTGSRDVGPDHQTYTKK 201

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: XP_022944261.1 (uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944262.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944263.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944264.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944266.1 uncharacterized protein LOC111448766 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 9.2e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 28 MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 87
          MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1  MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 88 DHQTYTKK 96
          DHQTYTKK
Sbjct: 61 DHQTYTKK 68

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: XP_023513377.1 (uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo] >XP_023513378.1 uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 28 MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 87
          MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPA+PLPPQATFRGPYINTGSRDVGP
Sbjct: 1  MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPARPLPPQATFRGPYINTGSRDVGP 60

Query: 88 DHQTYTKK 96
          DHQTYTKK
Sbjct: 61 DHQTYTKK 68

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: XP_022986414.1 (uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986415.1 uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986416.1 uncharacterized protein LOC111484157 [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 28 MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 87
          MTR+NIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1  MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 88 DHQTYTKK 96
          DHQTYTKK
Sbjct: 61 DHQTYTKK 68

[Close]

BLAST of Carg03198 vs. ExPASy TrEMBL
Match: A0A6J1FTX8 (uncharacterized protein LOC111448766 OS=Cucurbita moschata OX=3662 GN=LOC111448766 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.5e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 28 MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 87
          MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1  MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 88 DHQTYTKK 96
          DHQTYTKK
Sbjct: 61 DHQTYTKK 68

[Close]

BLAST of Carg03198 vs. ExPASy TrEMBL
Match: A0A6J1JB19 (uncharacterized protein LOC111484157 OS=Cucurbita maxima OX=3661 GN=LOC111484157 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 28 MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 87
          MTR+NIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1  MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 88 DHQTYTKK 96
          DHQTYTKK
Sbjct: 61 DHQTYTKK 68

[Close]

BLAST of Carg03198 vs. ExPASy TrEMBL
Match: A0A6J1CHR8 (uncharacterized protein LOC111011024 OS=Momordica charantia OX=3673 GN=LOC111011024 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.5e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 30 RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 89
          RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4  RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 90 QTYTKK 96
          QTY+KK
Sbjct: 64 QTYSKK 69

[Close]

BLAST of Carg03198 vs. ExPASy TrEMBL
Match: A0A1S3CQB9 (uncharacterized protein LOC103503042 OS=Cucumis melo OX=3656 GN=LOC103503042 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 30 RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 89
          RRN+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4  RRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 90 QTYTKK 96
          QTYTKK
Sbjct: 64 QTYTKK 69

[Close]

BLAST of Carg03198 vs. ExPASy TrEMBL
Match: A0A3P6EPH8 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC9T58252H PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.9e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 31 RNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 90
          RNIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5  RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 91 TYTKK 96
          TY KK
Sbjct: 65 TYPKK 69

[Close]

BLAST of Carg03198 vs. TAIR 10
Match: AT5G22875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 31 RNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 90
          RNI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5  RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 91 TYTKK 96
          TY KK
Sbjct: 65 TYPKK 69

[Close]

BLAST of Carg03198 vs. TAIR 10
Match: AT5G22875.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 31 RNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 90
          RNI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5  RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 91 TYTKK 96
          TY KK
Sbjct: 65 TYPKK 69

The following BLAST results are available for this feature:

BLAST of Carg03198 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010668.1	1.7e-44	100.00	hypothetical protein SDJN02_27463, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570826.1	3.9e-36	100.00	hypothetical protein SDJN03_29741, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944261.1	9.2e-30	100.00	uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944262.1 unchar...	[more]
XP_023513377.1	2.1e-29	98.53	uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo] >XP_023513378....	[more]
XP_022986414.1	2.7e-29	98.53	uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986415.1 uncharac...	[more]

BLAST of Carg03198 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg03198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTX8	4.5e-30	100.00	uncharacterized protein LOC111448766 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A6J1JB19	1.3e-29	98.53	uncharacterized protein LOC111484157 OS=Cucurbita maxima OX=3661 GN=LOC111484157...	[more]
A0A6J1CHR8	5.5e-28	96.97	uncharacterized protein LOC111011024 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3CQB9	1.2e-27	95.45	uncharacterized protein LOC103503042 OS=Cucumis melo OX=3656 GN=LOC103503042 PE=...	[more]
A0A3P6EPH8	3.9e-26	92.31	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC9T58252H PE=4 SV=1	[more]

BLAST of Carg03198 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22875.1	3.7e-29	89.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G22875.2	3.7e-29	89.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	PANTHER	PTHR36070	OSJNBA0019G23.7 PROTEIN	coord: 14..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03198-RA	Carg03198-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane