Carg03194 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03194
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 2621109 .. 2622174 (+)
RNA-Seq ExpressionCarg03194
SyntenyCarg03194
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGTGCCACGTGGAAGGGTGATATGGATTTTCTCCAAATATTATAGACGTTAGAGGAACGAAACGGTGACGTATTGGGGGTTTAATATTCAGAAGTCGCCGCTCTTTTCTCTATCTCTCTCTGTAACTTTCTATACAGCTTAGATTTCATTTCCTTTACTTAGAAATCACAGGCAGAGAGCTTCAATGGTACGTTTTTTCTTCTCCTCTTTTTGGCATTTCACCTCTTTTTCAGATCACTCGAAGCCGTAAGTGTTAGTTTTCGAATCGATTACATATGGCAGCTTTGCGTTTCTGTGACTTCTTCTTTTGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGAAGGTGGAGGATGATGTTTTGTTCATATTGTTCTTATCTGTGTTGCTTGTGATTTCGTTTGTTTGAGTGGTTTGTGAAATTATTAAATGTGGATTTTGGATATTCTTGTTCCGTTTTGATTTTGTTTTGTTTTGTATGGCTGGGAAGGCGGGGGAAGTGAATGTAACGGAAGGTTCGAATCTCTAGATTTTGATAATTGGAATAGAAGAAATGGAGTTGACTGATAGGCAGCGTTGTACTAGGAATTTTTTCCTTTTTGTGTCTCTTAATGGTGGAAAATTTGGGAGTCAAAACCGCGTTCTATTTATTTATTCTTTGCAATTGTCTGGAAATTGTTAGGGTAGTGATAGATTAATAGACTTGTGGTTTCGTTTGTTTGGGTTTCTACTTTACCACAATGTTTCTCTTGTTCGTTGTGTCTCTGTCGTAAAGCTTGTATCTCGTTGAGGCTGGAAAATAAGAGTAACGGACATTTGTGGTTTTTGATGCAGCGAAATCGAGGAACCAATGTACATACGATGAGTTTTCTCCAGGCTGGTGGATTCAATGCCAGAGGAAATCAATGATGGAACTGTATTTTCAAAATTTTCTTCTCGTTTAGAGATTGAAAAGTGAAAAGGATGACCGTGAAATTCTTCATAAAGATGAGGAGCATGGCAAGAATCAATTCACGGATGCAAGGATCCTGATCTTCAATGGATTGTCCAAACTCTAA

mRNA sequence

ATGACACGTGCCACGTGGAAGGGCAGAGAGCTTCAATGGCTGGTGGATTCAATGCCAGAGGAAATCAATGATGGAACTAGATTGAAAAGTGAAAAGGATGACCGTGAAATTCTTCATAAAGATGAGGAGCATGGCAAGAATCAATTCACGGATGCAAGGATCCTGATCTTCAATGGATTGTCCAAACTCTAA

Coding sequence (CDS)

ATGACACGTGCCACGTGGAAGGGCAGAGAGCTTCAATGGCTGGTGGATTCAATGCCAGAGGAAATCAATGATGGAACTAGATTGAAAAGTGAAAAGGATGACCGTGAAATTCTTCATAAAGATGAGGAGCATGGCAAGAATCAATTCACGGATGCAAGGATCCTGATCTTCAATGGATTGTCCAAACTCTAA

Protein sequence

MTRATWKGRELQWLVDSMPEEINDGTRLKSEKDDREILHKDEEHGKNQFTDARILIFNGLSKL
Homology
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BLAST of Carg03194 vs. NCBI nr
Match: KAG7010672.1 (hypothetical protein SDJN02_27467, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MTRATWKGRELQWLVDSMPEEINDGTRLKSEKDDREILHKDEEHGKNQFTDARILIFNGL 60
          MTRATWKGRELQWLVDSMPEEINDGTRLKSEKDDREILHKDEEHGKNQFTDARILIFNGL
Sbjct: 1  MTRATWKGRELQWLVDSMPEEINDGTRLKSEKDDREILHKDEEHGKNQFTDARILIFNGL 60

Query: 61 SKL 64
          SKL
Sbjct: 61 SKL 63

The following BLAST results are available for this feature:
BLAST of Carg03194 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010672.11.7e-27100.00hypothetical protein SDJN02_27467, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03194 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03194 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03194 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03194-RACarg03194-RAmRNA