Carg03178 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03178
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 2706744 .. 2710690 (+)
RNA-Seq ExpressionCarg03178
SyntenyCarg03178
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCAAATTCAAACTTACAGACCTATAGGACATCTGGTGTATGATTTGCTCCTTTGCTAGATTAAGTTTTTATCAATTAATAAGTGCTTCATATGATAGACCCCAAGTCACCACATTGCATACACATAAGAGAAAAAGGAAGGTAGGGGAACCGAGGGATACAGTAGTTGAGGAATGAGGAATATGATTATGCAATTTGGTGGGCTGCATGTGGTGATTCTGTGGGACCCATTTGATTTGGTTAGTTAGATGTGTTGTTCGAAAGTCGTTAGAGAGGCCCTATAAGGTCATTTATGTCCGAGCAAAGGTTTTCCTTTTGCGTTTGGCTGAATTGTAGCTCTTGTTGAGCATTATGGAGAGGGGCACTGTCAAAATAGTCAGTACGTAATTCGAGCTCTACCACATTACTCCTCATTTCTATACTTATATATCACTTGAACTTATGTTATTCAGTAAGTGGACTGTTGATATGAAATAACAGAGAGTAAATGATGCTGTAGTGATTTTTGTTTACCTTCTGTGCTAATACTACGTAAGTCACTTGGACCAAAAACTTGATTGGTGAAGTTGAAGGAATCCCAGTATGCTTTCAAAAGTTAGAAGCAATGAACTTCTCCACAAGACAGAATATAGCATTTTAGATTATGAAAGGTAGTATACTTGATGTTTGATGAGTCGTTTTGTTTTAGAAAATTCGAGCTTTGATAACCTTGGATAGGCAAGACAAGTCATGAGTTTGAATTTTATTTAGTGTAGTTCGTTGACACGATTAATGTTTTCTTTTTCTTCCTCTATTGAAAACATCCATCCTTAAGTTGAAGTTTATGTAATGGCATAGTAGGTCATGGCTGAGAAGAAAATTATAGCTATTTGTCAATCAGGCGGTGAATTTGAGACTGGTAGAGATGGCATGCTTTTATACCATGGAGGAGATGCCCATGCTATTGATGTGGATGATAAAATGAAGTTTAATGAGTTCAAGGTGGAAGTAGCCGAAATGTTTAATTGTGATATGGACACCATGTCGATCAAATACTTTCTCCCTGGCAACAGGAAGACTCTCATTTCACTCTCCAATGACAAGGATCTAAAGCGCATGTTAAAGTTTCATGGAGATTCTGCCACTGTTGATATTTTTGTAATCATGGAAGAAGTTATGGCTCCCAACATCTCAAATTTGCCTGCCAGTAGGTAGTCTACTTGATGTCTGAGCTTTTTATTTTTAATGTTTGTTTTTTTGTTTGTTTTTCTGTTTGTTTTTCATTTTCTAATGATTGAAAGTGTTGAGACTGTTTCAGCTTCGGGAGTTTGTGCTAAGCATAAAACCATTGTCATTTTGTATTTCCTAGGTCAAGTAGAACGACTTTGTCAGAAACAGTGGTACCGGTTGATGGTACCCCATTGGCTGTCGTTCATGGTATTGGGGATGATAATACCGAGTCTGATATCCCGCTTGATGGTGCACTCGATGTTGTGGATGACACAAACCCTTTAGTTACCCACATTGATATAGCAGGTGACATCACACCAATTCTTCCTCTTCTTGGTTCAAGTGATGACAAGAATGGCAAAGGTGCACAGCAGTGGCAGAATACCATTACTGGGGTGGGTCAACGATTTAGCAGTGTTCATGAGTTTCGGGAATCACTTCGTAAATATGCCATTGCACATCAATTTGCATTCAGGTACAAGAAAAATGATAGTCATCGGGTGACTGTAAAATGCAAGGCTGAAGATTGCCCTTGGCGGATTCATGCATCGAGATTATCAACCACTCCATTAATATGCATTAAGAAGATGAATTCCACACATACTTGTGAAGGAGCAGTTGCGACTACAGGTCACCAGGCTACAAGGAGTTGGGTGGCAAGTATTGTTAGGGAGAAGTTAAAAGTTTTCCCAAATTACAAACCAAAAGATATTGTTCATGACATCAAACAGGAATATGGAATACAATTAAACTACTTTCAGGCCTGGCGTGGGAAAGAAATAGCAAAGGAGCAGCTTCAGGGCTCATATAAAGAAGCATATAATCAGTTACCTTTTTTATGTGAAAAAATAATGGATACGAATCCTGGTAGCCTTGCCACCTGCGACACTAAAGAAGACTCGAGCTTTCACCGTCTCTTTGTCTCGTTCCATGCTTCATTAGGTGGTTTCCAACAGGGTTGCCGTCCTCTTATTTTCCTCGACAGCATTCCTTTGAAGTCAAAATATCAAGGAACATTATTGGCTGCAACAGCTGCAGATGGAGATGATGGTTTTTTTCCTGTTGCTTTTTCCGTAGTAGATACAGAAAGTGATGATAACTGGGGATGGTTTCTTTTACAATTGAAATCAGCGTTGTCAACATCTTGTCCTATAACGTTCGTGGCAGATAGACAGAAAGGTTTAACTGTTTCAATTGCGAGTATATTCAAGGGCTCGTTTCATGGTTATTGCCTAAGGTACTTGACTGAACAACTTATAAGAGACTTGAAAGGACAATTTTCTCATGAGGTGAAGCGGCTCATAGTTGAGGACTTCTATGCTGCTGCTTATGCACCTAAACCGGAAATTTTTCAGAGGTGCGTTGAAAGCATTAAAAGCATATCACTAGAAGCTTACAATTGGATCCTACAAAGTGAACCCCAGAATTGGGCAAATGCATTCTTCGAGGGTGCTAGGTATAACCACATGACATCAAACTTCGGAGAGATGTTCTATAGTTGGGTATCAGAGGCACATGAATTGCCCATCACGCAGATGGTTGATGTGATTAGGGTTAAGATAATGGAATTGATCTATACACGGCGGGCAGATTCTGATCAATGGTTGACGAGGCTAACCCCATCCATGGAGGAAAAGTTGGAAAAGGATGGCCATAAGGCTCATACCCTTCAAGTGCTAATAATATCTGCGGGTAACACATTTGAAGTTCGAGGTGACTCAATTGAAGTTGTTGATGTTGACCACTGGGATTGTACGTGTAAGGGGTGGCAACTTACTGGATTGCCATGTAGTCATGCAATTGCAGTCCTTGAATGTCTTGCTCGTAGCCCTTACGATTTTTGCTCCAGATATTTCACAACTGAAAGCTACAGATTAACATATTCAGAGTCGGTGCATCCTGTTCCTCAAGTCGACTTGCCCATACAGAAAAGATCTCTACAGGCCTCAGTTACTGTAACTCCTCCTCCTACACGTCGTCCACCTGGTCGACCTACATCAAAGCGATATGGATCCCCAGAGGTGATGAAACGTCAACTTCAATGCAGCAGATGCAAGGGGCTCGGGCACAACAAGTCAACCTGCAAAGAACTACTGCAGAGTGTTTGATATTGTAAGAACAACTTTCTTGTGTATACTTCGAACGTCTTTATTTACATAAAATAACGTTCATGATTGTATTTGGATTTAGGCATGAATGCATCAGTCAATAGCAATGTATGATTAGTTGAGGTGCATATAAGCTGAACCAAACACTCATGGATATAATAGCAATAATAGTAATGATAATAACACATAATATGTATGATTTCTACAACTAATAAACTATATACAATGGAGCCAAGACTCCTTTTCACGGTAGAATTGGTTTCTGCAGTCCTGTTTCTTGTATTTTCGTACTGCTGTATGCATCCTGGACTTTACTTTTTCCTGGTCCAACTATGCATCACATTTAGATTCTTCATTTCATATGGACCAACTTCTTGTAATCTGAACGACTTTCATTTTTAGGAGACAATAGACTTGTACCCGGATACGTTTGAGTTAGGGTGGTTATGTCGGTTTTGTAAGTCGGGGCGTCTGTCAACCTGTTTATATGACTAACTGGATACAAGTCTTGTTTGATGTTTTTCTTAAATAGGATTGTGAAAGACAGAAGGACCAAAAGTTCCCATTGTATAAAGGACTACGCCGAACCATATACTTCTACCTCTACTTATTTGCTTCCGTTGACT

mRNA sequence

ATGACCCAAATTCAAACTTACAGACCTATAGGACATCTGGTGATTGTGAAAGACAGAAGGACCAAAAGTTCCCATTGTATAAAGGACTACGCCGAACCATATACTTCTACCTCTACTTATTTGCTTCCGTTGACT

Coding sequence (CDS)

ATGACCCAAATTCAAACTTACAGACCTATAGGACATCTGGTGATTGTGAAAGACAGAAGGACCAAAAGTTCCCATTGTATAAAGGACTACGCCGAACCATATACTTCTACCTCTACTTATTTGCTTCCGTTGACT

Protein sequence

MTQIQTYRPIGHLVIVKDRRTKSSHCIKDYAEPYTSTSTYLLPLT
Homology
[Close]
BLAST of Carg03178 vs. NCBI nr
Match: KAG7010687.1 (hypothetical protein SDJN02_27483, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 9.5e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MTQIQTYRPIGHLVIVKDRRTKSSHCIKDYAEPYTSTSTYLLPLT 46
          MTQIQTYRPIGHLVIVKDRRTKSSHCIKDYAEPYTSTSTYLLPLT
Sbjct: 1  MTQIQTYRPIGHLVIVKDRRTKSSHCIKDYAEPYTSTSTYLLPLT 45

[Close]
BLAST of Carg03178 vs. NCBI nr
Match: KAG6570841.1 (hypothetical protein SDJN03_29756, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 13  LVIVKDRRTKSSHCIKDYAEPYTSTSTYLLPLT 46
           ++IVKDRRTKSSHCIKDYAEPYTSTSTYLLPLT
Sbjct: 784 ILIVKDRRTKSSHCIKDYAEPYTSTSTYLLPLT 816

The following BLAST results are available for this feature:
BLAST of Carg03178 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010687.19.5e-17100.00hypothetical protein SDJN02_27483, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570841.12.1e-0893.94hypothetical protein SDJN03_29756, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg03178 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03178 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03178 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03178-RACarg03178-RAmRNA