Carg03134 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03134
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	high mobility group B protein 3-like
Location	Carg_Chr20: 2929859 .. 2930883 (-)
RNA-Seq Expression	Carg03134
Synteny	Carg03134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAGCAGAAAAAATCTGAGATGAAATCCACGAAAATCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATGTAAGTACAGTTTATAATTTAACTCTAGTGCTCTAAAGAGTCTGCTTCACTCTGAAAACCTTCCTTTACATTCTAGCTTACATTATATTGGTCCGTTCTGATTTACATTCTTGTCTTGGCAAATGATAGGGAGGAATTCAGGAAGACGTTCAAGGAGAAGTTTCCTGATGGAAAAGCTGGTCCAGCAGTGAGATCTTATACTGTTACTTTTAATCAGCATTGCTTTCTTTTTATGCCTCAATTTATGTTTAGATATGACTGAGTGGAGGATCAGAAGACTTCTCGAGTTGGCTAGATTTGTTATTTGTGGTTAACTGTGTTTTGTTATTTTGCAGGTTGGCAAAGCTGGCGGTGAGAAATGGAAGTCACTTTCTGATGCTGTAAGATCATGAATCTCCTATTTTCATGCTATTTCCATTGAAAACTAATTCGAGGCTAAATAATTATTAGCAGCCTTAACAATAAATGATTAAGCTATAAGATTTGAGGTTAGTTGTTCTAATTTATATGAAGATCGTTTCATGTTTTGCTCTCTGTATTCACTTCGCTACTAGATCAGAATTATTGACTATACGAGTCTGCTGGCACTTGTGTTTCTTCCTCAGGAAAAAGCTCCTTGCGCTGAAAAAGCTTTGAGAAAGGAAGGCAGAGCATGAGATATCTCTTGAAGCATACACGAAGAATCTCGTAACGCGTTCCCACTCCATCTCTTCTTTCACTCCTTCGGCTTCCATTTGAACACCACCATATGGTTCCATTTATTATCTATTGTCCCTATCTCTCTTCTCACTAAGATCTCCTGGCTTACAGAATTGCTGTTCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGGTCCATGATGACGCAGAGCAGGAAGCTAGCTCCAGCTCTTAG

mRNA sequence

ATGCTGAAGCAGAAAAAATCTGAGATGAAATCCACGAAAATCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATGGAGGAATTCAGGAAGACGTTCAAGGAGAAGTTTCCTGATGGAAAAGCTGGTCCAGCAGTTGGCAAAGCTGGCGGTGAGAAATGGAAGTCACTTTCTGATGCTAATTGCTGTTCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGGTCCATGATGACGCAGAGCAGGAAGCTAGCTCCAGCTCTTAG

Coding sequence (CDS)

ATGCTGAAGCAGAAAAAATCTGAGATGAAATCCACGAAAATCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATGGAGGAATTCAGGAAGACGTTCAAGGAGAAGTTTCCTGATGGAAAAGCTGGTCCAGCAGTTGGCAAAGCTGGCGGTGAGAAATGGAAGTCACTTTCTGATGCTAATTGCTGTTCGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGGTCCATGATGACGCAGAGCAGGAAGCTAGCTCCAGCTCTTAG

Protein sequence

MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSSS

Homology

[Close]

BLAST of Carg03134 vs. NCBI nr
Match: KAG7010731.1 (High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG
Sbjct: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60

Query: 61  GEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSSS 106
           GEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSSS
Sbjct: 61  GEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSSS 105

[Close]

BLAST of Carg03134 vs. NCBI nr
Match: KAG6570882.1 (High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
          MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG
Sbjct: 1  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60

Query: 61 GEKWKSLSDANCCSGAEAEIEMPTESQKSTSE 93
          GEKWKSLSDANCCSGAEAEIEMPTESQKSTSE
Sbjct: 61 GEKWKSLSDANCCSGAEAEIEMPTESQKSTSE 92

[Close]

BLAST of Carg03134 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.2e-35
Identity = 90/132 (68.18%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLKQ+K+EMKSTK  K  KKDQNAPKRPAT FF+FMEEFRKTFKE+FPD KAGP VGKAG
Sbjct: 18  MLKQRKTEMKSTKSKKATKKDQNAPKRPATAFFVFMEEFRKTFKEEFPDAKAGPVVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSEV 106
           GEKWKS+SD                            NCC+ AEAEIEMPTESQKSTSEV
Sbjct: 78  GEKWKSMSDTEKAPYAEKALRRKAEYEIALEAYKKNLNCCADAEAEIEMPTESQKSTSEV 137

[Close]

BLAST of Carg03134 vs. NCBI nr
Match: XP_022140698.1 (high mobility group B protein 3-like [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 6.2e-35
Identity = 92/132 (69.70%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLKQ+K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSEV 106
           GEKWKSLSDA                           NCC  A+AE  MPTESQKSTSEV
Sbjct: 78  GEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCC--ADAEAAMPTESQKSTSEV 137

[Close]

BLAST of Carg03134 vs. NCBI nr
Match: XP_023533147.1 (high mobility group B protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 90/132 (68.18%), Postives = 97/132 (73.48%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSEV 106
           GEKWKS+SDA                           NC + AEAE+EM TESQKSTS+V
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAAEAEVEMSTESQKSTSDV 137

[Close]

BLAST of Carg03134 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.9e-13
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 4   QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGP 63
           + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 64  AVGKAGGEKWKSLSDAN----CCSGAEAEIEM-----------------PTESQKSTSEV 104
           AVGKAGGEKWKSLSD+          + ++E                    ES KS SEV
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSEV 124

[Close]

BLAST of Carg03134 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-12
Identity = 51/119 (42.86%), Postives = 62/119 (52.10%), Query Frame = 0


Query: 6   KSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWK 65
           K +   TK  K   KD N PKRP + FF+FME+FRKT+KEK P+ K+   VGKAGG+KWK
Sbjct: 17  KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWK 76

Query: 66  SLSDAN---CCSGAE------------------AEIEMPTESQKSTSEVHDDAEQEASS 104
            L+ A      S AE                  A      ES KS SEV+DD E +  S
Sbjct: 77  QLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVNDDDEDQDGS 135

[Close]

BLAST of Carg03134 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.6e-12
Identity = 46/107 (42.99%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 20  KDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA--------- 79
           KD N PKRP + FF+FMEEFRK F ++ P+ KA  AVGKA G KWK++SDA         
Sbjct: 39  KDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKS 98

Query: 80  ---------NCCSGAEAEIEMPT-----ESQKSTSEVHDDAEQEASS 104
                    N  +  + + E PT     ES+KS SEV+D+ + E  S
Sbjct: 99  EKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGS 145

[Close]

BLAST of Carg03134 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-10
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 5   KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKW 64
           +K   + T+  K  KKD N PKR  + FF+F+E+FR TFK++ P+ KA  AVGKAGG+KW
Sbjct: 33  EKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKW 92

Query: 65  KSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS 105
           KS+S A      E   +   E +K     + + E+ +  S
Sbjct: 93  KSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDES 132

[Close]

BLAST of Carg03134 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-10
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 2   LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGG 61
           L   K   K     K   KD N PKRPA+ FF+FME+FR+TFK++ P  K+   VGKA G
Sbjct: 15  LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 62  EKWKSLSDAN----CCSGAEAEIEM-----------------PTESQKSTSEVHDDAEQE 104
           +KWKSLSD+          + ++E                    ES KS SEV+D+ + E
Sbjct: 75  DKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEVNDEDDAE 134

[Close]

BLAST of Carg03134 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 92/132 (69.70%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLKQ+K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSEV 106
           GEKWKSLSDA                           NCC  A+AE  MPTESQKSTSEV
Sbjct: 78  GEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCC--ADAEAAMPTESQKSTSEV 137

[Close]

BLAST of Carg03134 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 89/132 (67.42%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSEV 106
           GEKWKS+SDA                           NC + AEAE+EM TESQKSTS+V
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAAEAEVEMSTESQKSTSDV 137

[Close]

BLAST of Carg03134 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.5e-34
Identity = 89/132 (67.42%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
           MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAG
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  GEKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSEV 106
           GEKWKS+SDA                           NC   AEAE+E+ TESQKSTS+V
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAAEAEVELSTESQKSTSDV 137

[Close]

BLAST of Carg03134 vs. ExPASy TrEMBL
Match: A0A6J1FWU6 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111448951 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 60
          MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG
Sbjct: 18 MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAG 77

Query: 61 GEKWKSLSDANCCSGAE 78
          GEKWKSLSDA     AE
Sbjct: 78 GEKWKSLSDAEKAPCAE 94

[Close]

BLAST of Carg03134 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.5e-29
Identity = 82/131 (62.60%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 2   LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGG 61
           LKQ+K+EMKST   K  KKDQNAPKRPAT FF+FMEEFR  FKE+FPD KAGP VGKAGG
Sbjct: 19  LKQRKAEMKST---KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGG 78

Query: 62  EKWKSLSDA---------------------------NCCSGAEAEIEMPTESQKSTSEVH 106
           EKWKS+SDA                           NC + AE E+EMPTESQKSTSEV+
Sbjct: 79  EKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVN 138

[Close]

BLAST of Carg03134 vs. TAIR 10
Match: AT1G20696.2 (high mobility group B3 )

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-15
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 4  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGP 63
          + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  
Sbjct: 5  KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 64 AVGKAGGEKWKSLSDA 71
          AVGKAGGEKWKSLSD+
Sbjct: 65 AVGKAGGEKWKSLSDS 80

[Close]

BLAST of Carg03134 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-14
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 4   QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGP 63
           + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 64  AVGKAGGEKWKSLSDAN----CCSGAEAEIEM-----------------PTESQKSTSEV 104
           AVGKAGGEKWKSLSD+          + ++E                    ES KS SEV
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSEV 124

[Close]

BLAST of Carg03134 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-14
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 4   QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGP 63
           + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVA 64

Query: 64  AVGKAGGEKWKSLSDAN----CCSGAEAEIEM-----------------PTESQKSTSEV 104
           AVGKAGGEKWKSLSD+          + ++E                    ES KS SEV
Sbjct: 65  AVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSEV 124

[Close]

BLAST of Carg03134 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 5   KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKW 64
           +K   + T+  K  KKD N PKR  + FF+F+E+FR TFK++ P+ KA  AVGKAGG+KW
Sbjct: 33  EKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKW 92

Query: 65  KSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS 105
           KS+S A      E   +   E +K     + + E+ +  S
Sbjct: 93  KSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDES 132

[Close]

BLAST of Carg03134 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 5   KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKW 64
           +K   + T+  K  KKD N PKR  + FF+F+E+FR TFK++ P+ KA  AVGKAGG+KW
Sbjct: 33  EKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKW 92

Query: 65  KSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS 105
           KS+S A      E   +   E +K     + + E+ +  S
Sbjct: 93  KSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDES 132

The following BLAST results are available for this feature:

BLAST of Carg03134 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010731.1	1.4e-47	100.00	High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6570882.1	1.5e-41	100.00	High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038902242.1	1.2e-35	68.18	high mobility group B protein 1-like [Benincasa hispida]	[more]
XP_022140698.1	6.2e-35	69.70	high mobility group B protein 3-like [Momordica charantia]	[more]
XP_023533147.1	1.1e-34	68.18	high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg03134 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93047	6.9e-13	40.00	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	5.8e-12	42.86	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	7.6e-12	42.99	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
O49595	2.5e-10	40.00	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
O49596	3.2e-10	38.21	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of Carg03134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIL2	3.0e-35	69.70	high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G5W3	1.5e-34	67.42	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1I4V5	2.5e-34	67.42	high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891...	[more]
A0A6J1FWU6	1.1e-29	93.51	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]
A0A1S3C2L9	5.5e-29	62.60	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg03134 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.2	2.6e-15	53.95	high mobility group B3	[more]
AT1G20696.1	4.9e-14	40.00	high mobility group B3	[more]
AT1G20696.3	4.9e-14	40.00	high mobility group B3	[more]
AT3G51880.1	1.7e-11	40.00	high mobility group B1	[more]
AT3G51880.2	1.7e-11	40.00	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 24..100 e-value: 0.0083 score: 25.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 25..70 e-value: 1.4E-10 score: 41.4
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 25..70 score: 11.41706
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 18..100 e-value: 3.6E-14 score: 55.0
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 10..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..105
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..71
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 25..69 e-value: 5.0365E-9 score: 46.8522
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03134-RA	Carg03134-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin