Carg03117 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03117
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Glycine-rich RNA-binding protein 3
Location	Carg_Chr20: 3038588 .. 3040098 (-)
RNA-Seq Expression	Carg03117
Synteny	Carg03117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAACGCGAACACCTTGATGCAGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTCCTCCTCAGCTCCCTCGTCTTCTCCTTCTGCACCAAACAACAAGCTCTTTGTTGCAGGTTCGTTTCTCTTTCGCAATCCCGTCCCACAGATGCTGCCCCAACATGATTCAAATGGTTTATGCATTGAATTTGATCTTGTTTTTTTCCTGCCGCTTCCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGGTAATCGTGAATGTTGAGTTTAAGCCTTTGATGTATGAGTTGTAGTCTACATGTTCGACGAAATGTCTAGTCGACTTCAGACCTCAGTTCATGATGTTTGCTTCTGGGTCGAAGCTTTTTGCTTCAATTCCATTCATAATTCCAATGATTTTTTAGGAAAAAAGTTGTTTCATTGAAGTTTCCTGTTTTACTATGCTTCTATGATTTTCTTGGGATATTGAGACAGCAAGACAATGAGAAATTTAGAGATTGAAAATTCTGCATGAAGAACTGTGAAGTACAACGAATTTGAGAGGTGGGAAATTAAAATTTATGTTTGAGCTGAAAGAAATTTGATGGCCATTGGTGATCACTCTGGAACTTCTCCAGCAAAATAGCTTATGGACATGGAGTTCATTTGATTTAGTTTAGATGAAATTGAATGGTCGCTGTGAAAAATCAATGGTGATCATTGTAGAAACCTTGATGCCCATTGGCTATCACTCTGAAACTTCTCCAGAAATTAGCCTATGGAATGCACTTGATATAGTTAGGATGAAATTCAATGGCCACTGAGAAACTTCAGTAATCGTCACTAAAGGAACTTTGATATCCATTGTTGATCACTCTGAAACTGCATCAGCAAATTGCTTATTAGTTGAGTTCAAGCATGTTGGATAGTGATTTGAAATGCTTAAATTCATTGTTCTAGAGTTTGCTTTTAATCATTCAAAATCAATTTTGATAGCATAAAACTTATGTTGAATGATAAAAAACGTGTTTATGGGTGATTTTGAACATGAAAAATTATAGTTTAACCATTTCAAGATCACTCTTTAACACGCCCTTTTTCTGTTAAGATTTGAATGCTTATATACACTCTCTTGACAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCAAGTCACTATTTAATAAGAAGTTGTTTGACAATGTTTAATCTAACATCCTAAATTAGTCAAAATGATAGTCATCCCATCACTTTCAGGCACTATTAGGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACGTGTTTGGCCGAAGATCTTGA

mRNA sequence

ATGAGCAACGCGAACACCTTGATGCAGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTCCTCCTCAGCTCCCTCGTCTTCTCCTTCTGCACCAAACAACAAGCTCTTTGTTGCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCAAGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACGTGTTTGGCCGAAGATCTTGA

Coding sequence (CDS)

ATGAGCAACGCGAACACCTTGATGCAGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTCCTCCTCAGCTCCCTCGTCTTCTCCTTCTGCACCAAACAACAAGCTCTTTGTTGCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCAAGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACGTGTTTGGCCGAAGATCTTGA

Protein sequence

MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKARRPLRISFALDKVRGGPVVIPRLSNINVFGRRS

Homology

[Close]

BLAST of Carg03117 vs. NCBI nr
Match: KAG7010748.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL
Sbjct: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKARRPLRI 120
           DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKARRPLRI
Sbjct: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKARRPLRI 120

Query: 121 SFALDKVRGGPVVIPRLSNINVFGRRS 148
           SFALDKVRGGPVVIPRLSNINVFGRRS
Sbjct: 121 SFALDKVRGGPVVIPRLSNINVFGRRS 147

[Close]

BLAST of Carg03117 vs. NCBI nr
Match: KAG6570903.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL
Sbjct: 2   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120
           DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA   RPL
Sbjct: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 121 RISFALDKVRGGPVVIPRLSNINVFGRRS 148
           RISFALDKVRGGPVVIPRLSNINVFGRRS
Sbjct: 122 RISFALDKVRGGPVVIPRLSNINVFGRRS 150

[Close]

BLAST of Carg03117 vs. NCBI nr
Match: XP_022944150.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 7.8e-68
Identity = 142/149 (95.30%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSNAN LM LARRALTNIQTPVLSFRCFCSQSSSS SSAPSSSPSAPNNKLFVAGLSWSL
Sbjct: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120
           DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA   RPL
Sbjct: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 121 RISFALDKVRGGPVVIPRLSNINVFGRRS 148
           RISFALDKVRGGPVVIPRLSNIN+FGRRS
Sbjct: 122 RISFALDKVRGGPVVIPRLSNINMFGRRS 150

[Close]

BLAST of Carg03117 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66
Identity = 141/150 (94.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSN NTLM L RRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL
Sbjct: 2   MSNTNTLMPLFRRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120
           DERSLKDAFSS+GEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA   RPL
Sbjct: 62  DERSLKDAFSSYGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 121 RISFALDKVRGGPVVIPRLSNI-NVFGRRS 148
           RISFALDKVRGGPVV+PRLSNI NVFGRRS
Sbjct: 122 RISFALDKVRGGPVVVPRLSNINNVFGRRS 151

[Close]

BLAST of Carg03117 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 261.2 bits (666), Expect = 5.6e-66
Identity = 141/150 (94.00%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSNAN LM LARRALTNIQTPVLSFRCFCSQSSSS SSAPSSSPSAPNNKLFVAGLSWSL
Sbjct: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120
           DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA   RPL
Sbjct: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 121 RISFALDKVRGGPVVIPRLSNI-NVFGRRS 148
           RISFALDKVRGGPVV+PRLSNI NV GRRS
Sbjct: 122 RISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of Carg03117 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-16
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 30  SQSSSSSSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRS 89
           SQSS+   ++   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 90  RGFGFVNFTNEDDAQTAKDAMDGKA--RRPLRISFALDK 127
           RGFGFV+F+ ED A  A   MDGK    R +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of Carg03117 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-15
Identity = 42/103 (40.78%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 30  SQSSSSSSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRS 89
           +Q S SS S   +     ++KLF+ G+++S+DE SL++AF+ +GEV + R++ D+++GRS
Sbjct: 21  AQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRS 80

Query: 90  RGFGFVNFTNEDDAQTAKDAMDGK--ARRPLRISFALDKVRGG 131
           RGFGFV FT+ + A +A  A+DG+    R +++++A D+  GG
Sbjct: 81  RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of Carg03117 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-15
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 48  NNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAK 107
           + KL++ GLS   DE SLKDAFSSF  VTE R+M +K +GRSRG+GFVNF +ED A +A 
Sbjct: 30  STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89

Query: 108 DAMDGKARRPLRISFALDK 127
            AM+G+      IS  + K
Sbjct: 90  SAMNGQELNGFNISVNVAK 108

[Close]

BLAST of Carg03117 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-14
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 31  QSSSSSSSAPSSSPSAP----NNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDS 90
           Q+ SS+ + P +S        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++
Sbjct: 13  QNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET 72

Query: 91  GRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPLRISFALDK 127
           GRSRGFGFVNF +E  A  A   MDGK    R +R++ A D+
Sbjct: 73  GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of Carg03117 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-14
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 45  SAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQ 104
           S+   KLFV GL+++ DER+L+D FSSFG ++EV ++ D+++ RSRGFGF+ FTN + A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 105 TAKDAMDGKA--RRPLRISFALDKVRG 130
            A  AM+G++   R +R+  A    RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of Carg03117 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.8e-68
Identity = 142/149 (95.30%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSNAN LM LARRALTNIQTPVLSFRCFCSQSSSS SSAPSSSPSAPNNKLFVAGLSWSL
Sbjct: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120
           DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA   RPL
Sbjct: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 121 RISFALDKVRGGPVVIPRLSNINVFGRRS 148
           RISFALDKVRGGPVVIPRLSNIN+FGRRS
Sbjct: 122 RISFALDKVRGGPVVIPRLSNINMFGRRS 150

[Close]

BLAST of Carg03117 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.7e-66
Identity = 141/150 (94.00%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSNAN LM LARRALTNIQTPVLSFRCFCSQSSSS SSAPSSSPSAPNNKLFVAGLSWSL
Sbjct: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120
           DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA   RPL
Sbjct: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 121 RISFALDKVRGGPVVIPRLSNI-NVFGRRS 148
           RISFALDKVRGGPVV+PRLSNI NV GRRS
Sbjct: 122 RISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of Carg03117 vs. ExPASy TrEMBL
Match: A0A5D3CH06 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00050 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.7e-58
Identity = 122/148 (82.43%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSN NTL+ LAR+ALTNIQTP+L+FRCFCSQ    S+SA SSSPSAP+NKLFVAGLSWS+
Sbjct: 2   MSNTNTLLLLARKALTNIQTPILTFRCFCSQ----STSALSSSPSAPSNKLFVAGLSWSM 61

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKARRPLRI 120
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NE+DAQ AKDAMDGKARRPL+I
Sbjct: 62  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKARRPLKI 121

Query: 121 SFALDKVRGGPVVIPRLSNI-NVFGRRS 148
           SFAL+KVRGGPV +PRLSNI N+ GRRS
Sbjct: 122 SFALEKVRGGPVAVPRLSNINNLVGRRS 145

[Close]

BLAST of Carg03117 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.6e-56
Identity = 121/150 (80.67%), Postives = 135/150 (90.00%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSN NTL+ LAR+ALTNIQTP+L+FRCFCSQ    S+SA SSSPSAP+NKLFVAGLSWS+
Sbjct: 19  MSNTNTLLLLARKALTNIQTPILTFRCFCSQ----STSALSSSPSAPSNKLFVAGLSWSM 78

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NE+DAQ AKDAMDGKA   RPL
Sbjct: 79  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPL 138

Query: 121 RISFALDKVRGGPVVIPRLSNI-NVFGRRS 148
           +ISFAL+KVRGGPV +PRLSNI N+ GRRS
Sbjct: 139 KISFALEKVRGGPVAVPRLSNINNLVGRRS 164

[Close]

BLAST of Carg03117 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 119/149 (79.87%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60
           MSN NT + LAR+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSM 60

Query: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N +DAQ AKDAMDGKA   RPL
Sbjct: 61  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 120

Query: 121 RISFALDKVRGGPVVIPRLSNI-NVFGRR 147
           RISFALDKVRG PVV+PRLSNI N+ GRR
Sbjct: 121 RISFALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of Carg03117 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.1 bits (362), Expect = 9.2e-35
Identity = 84/135 (62.22%), Postives = 97/135 (71.85%), Query Frame = 0


Query: 5   NTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSLDERS 64
           N +  L RR     Q  + S   F  Q  +SSS++PSS       KLF+ GLSWS+DE+S
Sbjct: 4   NGIELLVRRVSAIPQHSISSSFHFLPQFCTSSSASPSS-------KLFIGGLSWSVDEQS 63

Query: 65  LKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPLRISF 124
           LKDAFSSFGEV EVRI YDK SGRSRGFGFV+F  E DA +AKDAMDGK    RPLRISF
Sbjct: 64  LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISF 123

Query: 125 ALDKVRGGPVVIPRL 138
           AL++VRGGPVV+PRL
Sbjct: 124 ALERVRGGPVVVPRL 131

[Close]

BLAST of Carg03117 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 30  SQSSSSSSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRS 89
           SQSS+   ++   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 90  RGFGFVNFTNEDDAQTAKDAMDGKA--RRPLRISFALDK 127
           RGFGFV+F+ ED A  A   MDGK    R +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of Carg03117 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 30  SQSSSSSSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRS 89
           SQSS+   ++   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 90  RGFGFVNFTNEDDAQTAKDAMDGKA--RRPLRISFALDK 127
           RGFGFV+F+ ED A  A   MDGK    R +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of Carg03117 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-16
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 31  QSSSSSSSAPSSSPSAP----NNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDS 90
           Q+ SS+ + P +S        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++
Sbjct: 13  QNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET 72

Query: 91  GRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPLRISFALDKVRGG 131
           GRSRGFGFVNF +E  A  A   MDGK    R +R++ A D+  GG
Sbjct: 73  GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSGG 118

[Close]

BLAST of Carg03117 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 42/103 (40.78%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 30  SQSSSSSSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRS 89
           +Q S SS S   +     ++KLF+ G+++S+DE SL++AF+ +GEV + R++ D+++GRS
Sbjct: 21  AQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRS 80

Query: 90  RGFGFVNFTNEDDAQTAKDAMDGK--ARRPLRISFALDKVRGG 131
           RGFGFV FT+ + A +A  A+DG+    R +++++A D+  GG
Sbjct: 81  RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123

The following BLAST results are available for this feature:

BLAST of Carg03117 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010748.1	1.4e-72	100.00	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]
KAG6570903.1	2.8e-70	97.99	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022944150.1	7.8e-68	95.30	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]	[more]
XP_023512965.1	1.5e-66	94.00	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
XP_022986397.1	5.6e-66	94.00	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of Carg03117 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIS2	2.5e-16	48.48	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FNR1	4.6e-15	40.78	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
P39697	6.1e-15	53.16	40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
Q9SVM8	3.9e-14	43.14	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
W8E7I1	3.9e-14	45.98	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]

BLAST of Carg03117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYH8	3.8e-68	95.30	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1J7F1	2.7e-66	94.00	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A5D3CH06	2.7e-58	82.43	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C2R4	5.6e-56	80.67	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LQB7	1.2e-53	79.87	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV...	[more]

BLAST of Carg03117 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	9.2e-35	62.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	1.7e-17	48.48	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	1.7e-17	48.48	glycine-rich RNA-binding protein 4	[more]
AT4G13850.4	2.5e-16	43.40	glycine-rich RNA-binding protein 2	[more]
AT5G61030.1	3.3e-16	40.78	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 50..121 e-value: 1.1E-25 score: 101.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 51..113 e-value: 7.3E-21 score: 73.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 49..125 score: 20.013544
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 29..128 e-value: 3.4E-30 score: 107.1
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 6..140
None	No IPR available	PANTHER	PTHR15241:SF334	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL	coord: 6..140
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03117-RA	Carg03117-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding