Carg03116 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03116
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal_L30 domain-containing protein
Location	Carg_Chr20: 3042571 .. 3043370 (+)
RNA-Seq Expression	Carg03116
Synteny	Carg03116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGGTGCTTAGCTGAGATTGTTGATATGCTCGCAGAGAAATCTATTTCTTGATCATTTTTTTGTTTTGTAGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTACATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGCGGCTCCGAAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTTGCTTTTTATACTTATTCTCTACTGCGCACATGCACACACTACAGAACAACCTCATGGTGACTGAATGCCATGATCCCTTTTTCGTTGTTTTGCTTAATTTTATTATAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCTTCTCCAAGTTCTGCTTCTGCCTCTTGAAACATGCATTGCTGTTAGATATCAGGTCTACTTCTCATTTATCGGGACGATGTGAGAAGGATTATATTTGAGCAGTGTACTTTTCTGGAATTATTTGATAATCAAGGCTTTTATACTCTATACATCTTGCTGAGTCTAGTTGCTAGCTAAAATAATTTATTGGAATAGATGCCTGTTTGAAAATGATGCCTATCAAAATCATTTGAGGATTCTACTTTCAGTAAGAAGCCTGCTATGAGACATGGATGTTTACATAAATGAGTGCCGGTT

mRNA sequence

TTGAGGTGCTTAGCTGAGATTGTTGATATGCTCGCAGAGAAATCTATTTCTTGATCATTTTTTTGTTTTGTAGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTACATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGCGGCTCCGAAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCTTCTCCAAGTTCTGCTTCTGCCTCTTGAAACATGCATTGCTGTTAGATATCAGGTCTACTTCTCATTTATCGGGACGATGTGAGAAGGATTATATTTGAGCAGTGTACTTTTCTGGAATTATTTGATAATCAAGGCTTTTATACTCTATACATCTTGCTGAGTCTAGTTGCTAGCTAAAATAATTTATTGGAATAGATGCCTGTTTGAAAATGATGCCTATCAAAATCATTTGAGGATTCTACTTTCAGTAAGAAGCCTGCTATGAGACATGGATGTTTACATAAATGAGTGCCGGTT

Coding sequence (CDS)

ATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTACATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGCGGCTCCGAAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCTTCTCCAAGTTCTGCTTCTGCCTCTTGA

Protein sequence

MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS

Homology

[Close]

BLAST of Carg03116 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Carg03116 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.1 bits (536), Expect = 4.8e-51
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLPSPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Carg03116 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-50
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPSSASAS 108

[Close]

BLAST of Carg03116 vs. NCBI nr
Match: XP_022986405.1 (uncharacterized protein LOC111484152 [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 1.0e-48
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHVAL+PPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 108

[Close]

BLAST of Carg03116 vs. NCBI nr
Match: XP_008455933.1 (PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >KAA0062861.1 50S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09532.1 50S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Carg03116 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Sbjct: 3  LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

[Close]

BLAST of Carg03116 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of Carg03116 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Sbjct: 3  LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

[Close]

BLAST of Carg03116 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of Carg03116 vs. ExPASy Swiss-Prot
Match: A8ZV75 (50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpmD PE=3 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 16 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Sbjct: 2  SGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58

[Close]

BLAST of Carg03116 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLPSPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Carg03116 vs. ExPASy TrEMBL
Match: A0A6J1JDZ2 (uncharacterized protein LOC111484152 OS=Cucurbita maxima OX=3661 GN=LOC111484152 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.9e-49
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHVAL+PPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 108

[Close]

BLAST of Carg03116 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Carg03116 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Carg03116 vs. ExPASy TrEMBL
Match: A0A0A0LN29 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416090 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.1e-48
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP+PSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Carg03116 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 138.3 bits (347), Expect = 3.7e-33
Identity = 70/108 (64.81%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 109
           M+ QVKR+VVVETEEMY ARK+    H ALRPPLVV+H  SP++ S++
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSH-SSPATDSSN 107

The following BLAST results are available for this feature:

BLAST of Carg03116 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010749.1	1.7e-51	100.00	rpmD [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022944386.1	4.8e-51	99.07	uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothet...	[more]
XP_023512952.1	1.4e-50	98.15	uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]	[more]
XP_022986405.1	1.0e-48	95.37	uncharacterized protein LOC111484152 [Cucurbita maxima]	[more]
XP_008455933.1	3.8e-48	92.59	PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 5...	[more]

BLAST of Carg03116 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8FS51	1.6e-04	48.15	50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31...	[more]
Q8NSX3	1.6e-04	46.30	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM...	[more]
C3PL27	2.1e-04	42.59	50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D...	[more]
A4QBL5	2.7e-04	46.30	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=...	[more]
A8ZV75	2.7e-04	43.86	50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390...	[more]

BLAST of Carg03116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUA4	2.3e-51	99.07	uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A6J1JDZ2	4.9e-49	95.37	uncharacterized protein LOC111484152 OS=Cucurbita maxima OX=3661 GN=LOC111484152...	[more]
A0A1S3C214	1.9e-48	92.59	50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1	[more]
A0A5A7VAZ6	1.9e-48	92.59	50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LN29	7.1e-48	92.59	Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G4160...	[more]

BLAST of Carg03116 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55140.1	3.7e-33	64.81	ribosomal protein L30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 20..69 e-value: 1.5E-16 score: 60.0
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 17..78 e-value: 8.6E-19 score: 68.7
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 18..72
IPR005996	Ribosomal protein L30, bacterial-type	TIGRFAM	TIGR01308	TIGR01308	coord: 19..72 e-value: 4.5E-19 score: 65.9
IPR005996	Ribosomal protein L30, bacterial-type	PANTHER	PTHR15892	MITOCHONDRIAL RIBOSOMAL PROTEIN L30	coord: 1..106
IPR005996	Ribosomal protein L30, bacterial-type	HAMAP	MF_01371_B	Ribosomal_L30_B	coord: 16..73 score: 15.005798
IPR005996	Ribosomal protein L30, bacterial-type	CDD	cd01658	Ribosomal_L30	coord: 19..72 e-value: 8.52356E-16 score: 63.5942
None	No IPR available	PANTHER	PTHR15892:SF4	RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03116-RA	Carg03116-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome