Carg03110 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03110
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 3060594 .. 3061311 (-)
RNA-Seq ExpressionCarg03110
SyntenyCarg03110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACATATTGGAGTCTTGCCTGCTGCTGTATTTTTGTGGCAGGGTTACAGTTAGTTTCAGTTTAATGTGTCTGCTTTATGTTAATATATACTCTTGGGTATGTTGTCTGGTGATCTGGGGCATATTTGACCCTCCCCCCCCTACAGAAGGAGGAGATTCTGAATGCTTGTTTATTCTATAGGGATTCTTTGGATTTTGAATCCAATATGCAGGGAAATACCTGTTTCCACGTTGTTTGTGTTTGTGAATAATAGTGTGAGAAAGCTATGCTCAACTTCGATATAATACGATCTGGCTTTTTCCGAGAAATCTCTGCCCAAGTCGAGCTTTAGAACACCAGAAAGGATTATGAAAGTTAAGAGGGTCGAATGGTTAGAGAGTCGGTAAATAAGAAGCGAATAATGTGAGCTCCTAAGGATAAGAGCTGTAAGGTTAGAAGGAATGACAGGGCAGGCCTCATTCATGTGTTCTAATCCCAACCCTTGAAATGGTTTGTTTGGCTTCTTAGCTGCTGCTATGTCCTCATCGAGTGCCTTGCTCACCTGCAATGAAGTACCCAACCTCCTAAATCCCTCGGGTAAAAGAAGCAACTTGAATAAATCTTGATGATTTATATGCAATTTTTTATAATATGACCAAATCTTCAGGCCTCCACATGCTTCACGACATTCCTTGTACAGAAGTTATCAATTCTATATTTCCTCGAGATGCGTGA

mRNA sequence

ATGGCACATATTGGAGTCTTGCCTGCTGCTGTATTTTTGTGGCAGGGTTACACTGCTGCTATGTCCTCATCGAGTGCCTTGCTCACCTGCAATGAAGTACCCAACCTCCTAAATCCCTCGGGCCTCCACATGCTTCACGACATTCCTTGTACAGAAGTTATCAATTCTATATTTCCTCGAGATGCGTGA

Coding sequence (CDS)

ATGGCACATATTGGAGTCTTGCCTGCTGCTGTATTTTTGTGGCAGGGTTACACTGCTGCTATGTCCTCATCGAGTGCCTTGCTCACCTGCAATGAAGTACCCAACCTCCTAAATCCCTCGGGCCTCCACATGCTTCACGACATTCCTTGTACAGAAGTTATCAATTCTATATTTCCTCGAGATGCGTGA

Protein sequence

MAHIGVLPAAVFLWQGYTAAMSSSSALLTCNEVPNLLNPSGLHMLHDIPCTEVINSIFPRDA
Homology
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BLAST of Carg03110 vs. NCBI nr
Match: KAG7010755.1 (hypothetical protein SDJN02_27551, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 6.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MAHIGVLPAAVFLWQGYTAAMSSSSALLTCNEVPNLLNPSGLHMLHDIPCTEVINSIFPR 60
          MAHIGVLPAAVFLWQGYTAAMSSSSALLTCNEVPNLLNPSGLHMLHDIPCTEVINSIFPR
Sbjct: 1  MAHIGVLPAAVFLWQGYTAAMSSSSALLTCNEVPNLLNPSGLHMLHDIPCTEVINSIFPR 60

Query: 61 DA 63
          DA
Sbjct: 61 DA 62

The following BLAST results are available for this feature:
BLAST of Carg03110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010755.16.2e-27100.00hypothetical protein SDJN02_27551, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03110-RACarg03110-RAmRNA