Carg03067 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03067
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription initiation factor IIE subunit alpha-like
LocationCarg_Chr09: 3302995 .. 3303723 (+)
RNA-Seq ExpressionCarg03067
SyntenyCarg03067
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAACCCACTCTGTAGTCCTGCCAGAGCGTCTGATTCGAACAAGCTCCGCCGTTATCACCGGCGGAGGAAGTCGGCGGAGAGTCCGGTGGTTTGGGCCAAAGCGAAGACGATGGGGGGGTCTGAGGTGTCGGAACCGTCGTCGCCGAAAGTGACCTGTGCAGGGCAGATTAAGATGAGGCCGAAGAGCAGGAAGAGCTGGGAATCGGTGATGGAGGAGATAGAGAGAATTCATAATAGGAGGGAATTACGGCGGAGGAGGTTCAATTGGGTCGAATCTTTAGGGTTCAAGAAGGATATAATGCAATTCTTAACGTGTTTACGGAGCTTACGGTTTGATTTTGGGTGTTTCGGAGCTTTCCCTGAAGCAGAGTTCACCTCTGAAGACGAGGAAGAAGAGGAAGTGGGTGTCCAGGGGAGCGATGGCTCTAGAACGGCGTTTTCTAAATGGTTCATGGTTTTACAGGGAAGTGGGTTCCGGAGAGACCGCAACGGTCTCTGTACAGTTGATGATGCATCGATTGGGCCGCCGATGGCGCCGCCCAGAAACGCGCTTTTGCTTATGCGCTGCAGGTCTGCTCCGGCGAAGAGTTGGGTGGAGGAAGGATGTTCAGAGGAGGAAGAAGAAACAGAGGTGAAGGTGAAGAAGAGCTTGAAATGGCTAATGGAGGAAGAGAACAGAGAGAGCAGGGATTTGGTTACGAGGAGCCAGAGTTGGAAGGTTTGA

mRNA sequence

ATGCCAAACCCACTCTGTAGTCCTGCCAGAGCGTCTGATTCGAACAAGCTCCGCCGTTATCACCGGCGGAGGAAGTCGGCGGAGAGTCCGGTGGTTTGGGCCAAAGCGAAGACGATGGGGGGGTCTGAGGTGTCGGAACCGTCGTCGCCGAAAGTGACCTGTGCAGGGCAGATTAAGATGAGGCCGAAGAGCAGGAAGAGCTGGGAATCGGTGATGGAGGAGATAGAGAGAATTCATAATAGGAGGGAATTACGGCGGAGGAGGTTCAATTGGGTCGAATCTTTAGGGTTCAAGAAGGATATAATGCAATTCTTAACGTGTTTACGGAGCTTACGGTTTGATTTTGGGTGTTTCGGAGCTTTCCCTGAAGCAGAGTTCACCTCTGAAGACGAGGAAGAAGAGGAAGTGGGTGTCCAGGGGAGCGATGGCTCTAGAACGGCGTTTTCTAAATGGTTCATGGTTTTACAGGGAAGTGGGTTCCGGAGAGACCGCAACGGTCTCTGTACAGTTGATGATGCATCGATTGGGCCGCCGATGGCGCCGCCCAGAAACGCGCTTTTGCTTATGCGCTGCAGGTCTGCTCCGGCGAAGAGTTGGGTGGAGGAAGGATGTTCAGAGGAGGAAGAAGAAACAGAGGTGAAGGTGAAGAAGAGCTTGAAATGGCTAATGGAGGAAGAGAACAGAGAGAGCAGGGATTTGGTTACGAGGAGCCAGAGTTGGAAGGTTTGA

Coding sequence (CDS)

ATGCCAAACCCACTCTGTAGTCCTGCCAGAGCGTCTGATTCGAACAAGCTCCGCCGTTATCACCGGCGGAGGAAGTCGGCGGAGAGTCCGGTGGTTTGGGCCAAAGCGAAGACGATGGGGGGGTCTGAGGTGTCGGAACCGTCGTCGCCGAAAGTGACCTGTGCAGGGCAGATTAAGATGAGGCCGAAGAGCAGGAAGAGCTGGGAATCGGTGATGGAGGAGATAGAGAGAATTCATAATAGGAGGGAATTACGGCGGAGGAGGTTCAATTGGGTCGAATCTTTAGGGTTCAAGAAGGATATAATGCAATTCTTAACGTGTTTACGGAGCTTACGGTTTGATTTTGGGTGTTTCGGAGCTTTCCCTGAAGCAGAGTTCACCTCTGAAGACGAGGAAGAAGAGGAAGTGGGTGTCCAGGGGAGCGATGGCTCTAGAACGGCGTTTTCTAAATGGTTCATGGTTTTACAGGGAAGTGGGTTCCGGAGAGACCGCAACGGTCTCTGTACAGTTGATGATGCATCGATTGGGCCGCCGATGGCGCCGCCCAGAAACGCGCTTTTGCTTATGCGCTGCAGGTCTGCTCCGGCGAAGAGTTGGGTGGAGGAAGGATGTTCAGAGGAGGAAGAAGAAACAGAGGTGAAGGTGAAGAAGAGCTTGAAATGGCTAATGGAGGAAGAGAACAGAGAGAGCAGGGATTTGGTTACGAGGAGCCAGAGTTGGAAGGTTTGA

Protein sequence

MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKMRPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGAFPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSWKV
Homology
BLAST of Carg03067 vs. NCBI nr
Match: KAG7024639.1 (hypothetical protein SDJN02_13457, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 485.0 bits (1247), Expect = 3.9e-133
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60
           MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM
Sbjct: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60

Query: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120
           RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA
Sbjct: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120

Query: 121 FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA 180
           FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA
Sbjct: 121 FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA 180

Query: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240
           PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW
Sbjct: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240

Query: 241 KV 243
           KV
Sbjct: 241 KV 242

BLAST of Carg03067 vs. NCBI nr
Match: KAG6591755.1 (hypothetical protein SDJN03_14101, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 481.1 bits (1237), Expect = 5.6e-132
Identity = 240/242 (99.17%), Postives = 241/242 (99.59%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60
           MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM
Sbjct: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60

Query: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120
           RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA
Sbjct: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120

Query: 121 FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA 180
           FPEAEFTSEDEEEEEVGV+GSDGSRTAFSKWFMVLQGSG RRDRNGLCTVDDASIGPPMA
Sbjct: 121 FPEAEFTSEDEEEEEVGVEGSDGSRTAFSKWFMVLQGSGVRRDRNGLCTVDDASIGPPMA 180

Query: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240
           PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW
Sbjct: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240

Query: 241 KV 243
           KV
Sbjct: 241 KV 242

BLAST of Carg03067 vs. NCBI nr
Match: XP_022935869.1 (uncharacterized protein LOC111442647 [Cucurbita moschata] >XP_022935870.1 uncharacterized protein LOC111442647 [Cucurbita moschata])

HSP 1 Score: 475.7 bits (1223), Expect = 2.4e-130
Identity = 238/242 (98.35%), Postives = 239/242 (98.76%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60
           MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM
Sbjct: 28  MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 87

Query: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120
           RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA
Sbjct: 88  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 147

Query: 121 FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA 180
           FPEAEFTSEDEEEEEVGV+GSDGSRTAFSKWFMVLQGSG RRD NGLCTVDDASIGPPMA
Sbjct: 148 FPEAEFTSEDEEEEEVGVEGSDGSRTAFSKWFMVLQGSGVRRDGNGLCTVDDASIGPPMA 207

Query: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240
           PPRNALLLMRCRSAPAKSWVEEGCSEE EETEVKVKKSLKWLMEEENRESRDLVTRSQSW
Sbjct: 208 PPRNALLLMRCRSAPAKSWVEEGCSEEGEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 267

Query: 241 KV 243
           KV
Sbjct: 268 KV 269

BLAST of Carg03067 vs. NCBI nr
Match: XP_023535965.1 (uncharacterized protein LOC111797241 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023535966.1 uncharacterized protein LOC111797241 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 472.2 bits (1214), Expect = 2.6e-129
Identity = 236/242 (97.52%), Postives = 238/242 (98.35%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60
           MPNPLCSPARASDSNKLRRYHRRR+SAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM
Sbjct: 28  MPNPLCSPARASDSNKLRRYHRRRRSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 87

Query: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120
           RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA
Sbjct: 88  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 147

Query: 121 FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA 180
           FPEAEFTSEDEEEE+V VQGSDGSRTAFSKWFMVLQGSG RRD NGLCTVDDASIGPPMA
Sbjct: 148 FPEAEFTSEDEEEEDVAVQGSDGSRTAFSKWFMVLQGSGVRRDGNGLCTVDDASIGPPMA 207

Query: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240
           PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESR LVTRSQSW
Sbjct: 208 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRGLVTRSQSW 267

Query: 241 KV 243
           KV
Sbjct: 268 KV 269

BLAST of Carg03067 vs. NCBI nr
Match: XP_023535963.1 (uncharacterized protein LOC111797241 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023535964.1 uncharacterized protein LOC111797241 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.1 bits (1211), Expect = 5.8e-129
Identity = 235/242 (97.11%), Postives = 238/242 (98.35%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60
           MPNPLCSPARASDSNKLRRYHRRR+SAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM
Sbjct: 28  MPNPLCSPARASDSNKLRRYHRRRRSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 87

Query: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120
           RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA
Sbjct: 88  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 147

Query: 121 FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA 180
           FPEAEFTSEDEEEE+V V+GSDGSRTAFSKWFMVLQGSG RRD NGLCTVDDASIGPPMA
Sbjct: 148 FPEAEFTSEDEEEEDVAVEGSDGSRTAFSKWFMVLQGSGVRRDGNGLCTVDDASIGPPMA 207

Query: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240
           PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESR LVTRSQSW
Sbjct: 208 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRGLVTRSQSW 267

Query: 241 KV 243
           KV
Sbjct: 268 KV 269

BLAST of Carg03067 vs. ExPASy TrEMBL
Match: A0A6J1FBW7 (uncharacterized protein LOC111442647 OS=Cucurbita moschata OX=3662 GN=LOC111442647 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.1e-130
Identity = 238/242 (98.35%), Postives = 239/242 (98.76%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60
           MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM
Sbjct: 28  MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 87

Query: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120
           RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA
Sbjct: 88  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 147

Query: 121 FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA 180
           FPEAEFTSEDEEEEEVGV+GSDGSRTAFSKWFMVLQGSG RRD NGLCTVDDASIGPPMA
Sbjct: 148 FPEAEFTSEDEEEEEVGVEGSDGSRTAFSKWFMVLQGSGVRRDGNGLCTVDDASIGPPMA 207

Query: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240
           PPRNALLLMRCRSAPAKSWVEEGCSEE EETEVKVKKSLKWLMEEENRESRDLVTRSQSW
Sbjct: 208 PPRNALLLMRCRSAPAKSWVEEGCSEEGEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 267

Query: 241 KV 243
           KV
Sbjct: 268 KV 269

BLAST of Carg03067 vs. ExPASy TrEMBL
Match: A0A6J1IQQ3 (uncharacterized protein LOC111477333 OS=Cucurbita maxima OX=3661 GN=LOC111477333 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.1e-128
Identity = 232/242 (95.87%), Postives = 237/242 (97.93%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQIKM 60
           MPNPLCSP RASDSNKLRRYHRRRKSAESPVVWAKAKT+GGSEVSEPSSPKVTCAGQIKM
Sbjct: 28  MPNPLCSPVRASDSNKLRRYHRRRKSAESPVVWAKAKTIGGSEVSEPSSPKVTCAGQIKM 87

Query: 61  RPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCFGA 120
           R KSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRS+RFDFGCFGA
Sbjct: 88  RRKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSIRFDFGCFGA 147

Query: 121 FPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASIGPPMA 180
           FPEAEFTSEDEEEEEVGV+GSDGSRTAFSKWFMVLQGSG RRD NGLCTVDDASIGPPMA
Sbjct: 148 FPEAEFTSEDEEEEEVGVEGSDGSRTAFSKWFMVLQGSGVRRDGNGLCTVDDASIGPPMA 207

Query: 181 PPRNALLLMRCRSAPAKSWVEEGCSEEEEETEVKVKKSLKWLMEEENRESRDLVTRSQSW 240
           PPRNALLLMRCRSAPAKSWVEE CSEEEE+TEVKVKKSLKWLMEEENRESRDLVTRS+SW
Sbjct: 208 PPRNALLLMRCRSAPAKSWVEEACSEEEEDTEVKVKKSLKWLMEEENRESRDLVTRSRSW 267

Query: 241 KV 243
           KV
Sbjct: 268 KV 269

BLAST of Carg03067 vs. ExPASy TrEMBL
Match: A0A0A0L1Z4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377750 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.9e-91
Identity = 188/283 (66.43%), Postives = 212/283 (74.91%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKL----RRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAG 60
           MPNPLCSPAR SDS+K     RRYHRRRKSAESPVVWAKAKTM GSE+SEPSSPKVTCAG
Sbjct: 29  MPNPLCSPARGSDSSKFRLDYRRYHRRRKSAESPVVWAKAKTM-GSEISEPSSPKVTCAG 88

Query: 61  QIKMRPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFG 120
           QIK+RPK+ KSW+SVMEEIERIHNRR+LRRRRFNW+ES GFKKDIMQFLTCLR++RFDF 
Sbjct: 89  QIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRFNWIESFGFKKDIMQFLTCLRTMRFDFR 148

Query: 121 CFGAFPEAEFTSEDEEEEE-----------VGVQGSDGSRTAFSKWFMVLQGSG---FRR 180
           CF AFPE +FT+E+EEEEE           VG++ ++ SRTAFSKWFMVLQ +G    +R
Sbjct: 149 CFRAFPETDFTTEEEEEEEEEEEEEEEKNQVGIEENESSRTAFSKWFMVLQENGSNELKR 208

Query: 181 DRNGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEGCSEEEEETE-------VKV 240
           D N  C  DD SI   MAPPRNALLLMRC+SAPA+ W+EE   EE++E E       VKV
Sbjct: 209 DSNSRCYEDDESIEATMAPPRNALLLMRCKSAPARRWMEEESEEEDDEKEKEKEKEKVKV 268

Query: 241 KKSLKWLMEEENRE----------------SRDLVTRSQSWKV 243
           KKSLKWLMEEENRE                +    TRSQSWKV
Sbjct: 269 KKSLKWLMEEENRERVVMEMGTDFCRMISDNAKEFTRSQSWKV 310

BLAST of Carg03067 vs. ExPASy TrEMBL
Match: A0A5D3D503 (Transcription initiation factor IIE subunit alpha-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001490 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.8e-89
Identity = 186/275 (67.64%), Postives = 209/275 (76.00%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKL----RRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAG 60
           MPNPLCSPAR SDS+K     RR+HRRRKSAESPVVWAKAKTM GSE+SEPSSPKVTCAG
Sbjct: 36  MPNPLCSPARGSDSSKFRLDHRRFHRRRKSAESPVVWAKAKTM-GSEISEPSSPKVTCAG 95

Query: 61  QIKMRPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFG 120
           QIK+RPK+ KSW+SVMEEIERIHNRR+LRRRRF WVES GFKKDIMQFLTCLR++RFDF 
Sbjct: 96  QIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRFRWVESFGFKKDIMQFLTCLRTIRFDFR 155

Query: 121 CFGAFPEAEFTSEDEEEEE---------VGVQGSDGSRTAFSKWFMVLQGSG---FRRDR 180
           CF AFPE +FT+E+EEEEE         VG++ ++ SRTAFSKWFMVLQ +G    +RD 
Sbjct: 156 CFRAFPETDFTTEEEEEEEEEEEDEKNQVGIEENESSRTAFSKWFMVLQENGSNELKRDS 215

Query: 181 NGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEGCSEEEEETE-VKVKKSLKWLM 240
             LC  DD SI   MAPP NALLLMRCRSAPA+ W+EE   E ++E E VKVKKSLKWLM
Sbjct: 216 KSLCNEDDESIEAIMAPPINALLLMRCRSAPARRWMEEESEEGDDEKEKVKVKKSLKWLM 275

Query: 241 EEENRE----------------SRDLVTRSQSWKV 243
           EEENRE                +    TRSQSWKV
Sbjct: 276 EEENRERLVVEMGTDFCRMTSDNAKEFTRSQSWKV 309

BLAST of Carg03067 vs. ExPASy TrEMBL
Match: A0A1S3B949 (uncharacterized protein LOC103487551 OS=Cucumis melo OX=3656 GN=LOC103487551 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.8e-89
Identity = 186/275 (67.64%), Postives = 209/275 (76.00%), Query Frame = 0

Query: 1   MPNPLCSPARASDSNKL----RRYHRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAG 60
           MPNPLCSPAR SDS+K     RR+HRRRKSAESPVVWAKAKTM GSE+SEPSSPKVTCAG
Sbjct: 36  MPNPLCSPARGSDSSKFRLDHRRFHRRRKSAESPVVWAKAKTM-GSEISEPSSPKVTCAG 95

Query: 61  QIKMRPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFG 120
           QIK+RPK+ KSW+SVMEEIERIHNRR+LRRRRF WVES GFKKDIMQFLTCLR++RFDF 
Sbjct: 96  QIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRFRWVESFGFKKDIMQFLTCLRTIRFDFR 155

Query: 121 CFGAFPEAEFTSEDEEEEE---------VGVQGSDGSRTAFSKWFMVLQGSG---FRRDR 180
           CF AFPE +FT+E+EEEEE         VG++ ++ SRTAFSKWFMVLQ +G    +RD 
Sbjct: 156 CFRAFPETDFTTEEEEEEEEEEEDEKNQVGIEENESSRTAFSKWFMVLQENGSNELKRDS 215

Query: 181 NGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEGCSEEEEETE-VKVKKSLKWLM 240
             LC  DD SI   MAPP NALLLMRCRSAPA+ W+EE   E ++E E VKVKKSLKWLM
Sbjct: 216 KSLCNEDDESIEAIMAPPINALLLMRCRSAPARRWMEEESEEGDDEKEKVKVKKSLKWLM 275

Query: 241 EEENRE----------------SRDLVTRSQSWKV 243
           EEENRE                +    TRSQSWKV
Sbjct: 276 EEENRERLVVEMGTDFCRMTSDNAKEFTRSQSWKV 309

BLAST of Carg03067 vs. TAIR 10
Match: AT1G78110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). )

HSP 1 Score: 199.1 bits (505), Expect = 4.0e-51
Identity = 128/278 (46.04%), Postives = 164/278 (58.99%), Query Frame = 0

Query: 2   PNPLCSPARASDSNKLRRYHRRRKSAE----------SPVVWAK---AKTMGGSEVSEPS 61
           P P+CSP+R SDS+  RR H RR+ ++          SPV+WAK   +K MGG E++EP+
Sbjct: 34  PKPICSPSRPSDSSTNRRPHHRRQLSKLSGGGGGGHGSPVLWAKQASSKNMGGDEIAEPT 93

Query: 62  SPKVTCAGQIKMRPKS----RKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQF 121
           SPKVTCAGQIK+RP       K+W+SVMEEIERIH+ R   +         G KKD+M F
Sbjct: 94  SPKVTCAGQIKVRPSKCGGRGKNWQSVMEEIERIHDNRSQSK-------FFGLKKDVMGF 153

Query: 122 LTCLRSLRFDFGCFGAFPEAEFTSEDEEEEE---------VGVQGSDGSRTAFSKWFMVL 181
           LTCLR+++FDF CFG F  A+ TS+D+EEE+         V  +  + S+T FSKWFMVL
Sbjct: 154 LTCLRNIKFDFRCFGDFRHADVTSDDDEEEDDDDDEEEEVVEGEEEENSKTVFSKWFMVL 213

Query: 182 QGSGFRRD---RNGLC----TVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEGC---- 230
           Q     +D    N  C     ++D    P + PP NALLLMRCRSAPAKSW+EE      
Sbjct: 214 QEEQNNKDDDKNNNKCDEKRDLEDTETEPAVPPP-NALLLMRCRSAPAKSWLEERMKVKT 273

BLAST of Carg03067 vs. TAIR 10
Match: AT1G22230.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78110.1); Has 2358 Blast hits to 1759 proteins in 159 species: Archae - 2; Bacteria - 36; Metazoa - 1046; Fungi - 203; Plants - 157; Viruses - 72; Other Eukaryotes - 842 (source: NCBI BLink). )

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-34
Identity = 104/254 (40.94%), Postives = 133/254 (52.36%), Query Frame = 0

Query: 5   LCSPARASDSNKLRRYHRRRKSAESPVVWAKAKTMGGSE--VSEPSSPKVTCAGQIKMRP 64
           + SP+ + +  +   +HRR  S  S       +  GG    V EP+SPKVTCAGQIK+R 
Sbjct: 33  ISSPSSSFNRRQNAPHHRRSISKLSSSGGGVRQNRGGGREVVEEPTSPKVTCAGQIKVRS 92

Query: 65  KSR----KSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFLTCLRSLRFDFGCF 124
             R    K+W+S+M EIE+IH  R     +F      G K+D+M FLTCLR   FDF CF
Sbjct: 93  SKRDGGGKNWQSLMAEIEKIH--RSKSESKF-----FGIKRDVMGFLTCLRD--FDFRCF 152

Query: 125 GAFPEAEFTSEDEEEEEVGVQ------GSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDD 184
           GAFP  +  S+DEEE+E   +        + S T FSKW MVL      +  N  C    
Sbjct: 153 GAFPPVDIISDDEEEDEEEEEEDEEEDEDESSGTVFSKWLMVLH----EKQNNEECVDGK 212

Query: 185 ASIGPPM---APPRNALLLMRCRSAPAKSWVEE---------------GCSEEEEETEVK 229
            ++   +    PP NALLLMRCRSAP K+W EE               G  EEEE+  V 
Sbjct: 213 ENVFSDVETAVPPPNALLLMRCRSAPVKNWSEEKKEETEEGDNRVKQSGEEEEEEKDRVG 272

BLAST of Carg03067 vs. TAIR 10
Match: AT2G37100.1 (protamine P1 family protein )

HSP 1 Score: 52.0 bits (123), Expect = 7.8e-07
Identity = 55/217 (25.35%), Postives = 87/217 (40.09%), Query Frame = 0

Query: 4   PLCSPARASDSNKLRRY------HRRRKSAESPVVWAKAKTMGGSEVSEPSSPKVTCAGQ 63
           P+ SP R  +   L R+       R R  +  P+ + +      +E  EP+SPKVTC GQ
Sbjct: 8   PVSSPGRTENPPLLMRFLRTKSRSRSRSRSRRPIFFRRKNASAAAETQEPTSPKVTCMGQ 67

Query: 64  IKMRPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGFKKDIMQFL--TCLRSLRFDF 123
           +++    +   E+          RR+   RR  WV++          +  TC   +   +
Sbjct: 68  VRINRSKKPKPETARVSGGATERRRQ--SRRCGWVKNAFPCHSFTGIIKPTCFSPV---W 127

Query: 124 GCFGAFPEAEFTSEDEEEEEVGVQGSDGSRTAFSKWFMVLQGSGFRRDRNGLCTVDDASI 183
             + +F  A F+ + E+        S  S   F +  +  +     R          +  
Sbjct: 128 RKWKSFSHASFSKKSEKR-----SSSSRSEPIFGRSTVEPEEPEETRKEENQEEEASSCK 187

Query: 184 GPPMAPPRNALLLMRCRSAPAKS-WVEEGCSEEEEET 212
                PPRNA LL RCRSAP +S        E++EET
Sbjct: 188 SFTATPPRNAFLLTRCRSAPYRSPSSANSLFEDQEET 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7024639.13.9e-133100.00hypothetical protein SDJN02_13457, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591755.15.6e-13299.17hypothetical protein SDJN03_14101, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022935869.12.4e-13098.35uncharacterized protein LOC111442647 [Cucurbita moschata] >XP_022935870.1 unchar... [more]
XP_023535965.12.6e-12997.52uncharacterized protein LOC111797241 isoform X3 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_023535963.15.8e-12997.11uncharacterized protein LOC111797241 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FBW71.1e-13098.35uncharacterized protein LOC111442647 OS=Cucurbita moschata OX=3662 GN=LOC1114426... [more]
A0A6J1IQQ39.1e-12895.87uncharacterized protein LOC111477333 OS=Cucurbita maxima OX=3661 GN=LOC111477333... [more]
A0A0A0L1Z48.9e-9166.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377750 PE=4 SV=1[more]
A0A5D3D5032.8e-8967.64Transcription initiation factor IIE subunit alpha-like OS=Cucumis melo var. maku... [more]
A0A1S3B9492.8e-8967.64uncharacterized protein LOC103487551 OS=Cucumis melo OX=3656 GN=LOC103487551 PE=... [more]
Match NameE-valueIdentityDescription
AT1G78110.14.0e-5146.04unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G22230.13.4e-3440.94unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT2G37100.17.8e-0725.35protamine P1 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR33448CHLOROPLAST PROTEIN HCF243-RELATEDcoord: 1..228
NoneNo IPR availablePANTHERPTHR33448:SF3OS09G0370000 PROTEINcoord: 1..228

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03067-RACarg03067-RAmRNA