Carg03066 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03066
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionERF71
LocationCarg_Chr09: 3296832 .. 3299288 (-)
RNA-Seq ExpressionCarg03066
SyntenyCarg03066
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATGATTGTCGTTTACATCATTCAGTCCTGTATTGCATTTCTCCCTTGTTATCGATTCTGTATCTTCTTCGTGCAGATTGAGAGGCAGATTCGAGCAGAATGAGGCGTATTCCCGCTCCTGCTACGGCGCAGTAAGTGTACTTTTTTTTCTGGAGTTTTGTATCGGAACAATGTTTGATTGCATTTTCAAGTTCTTCGGGAGAAATCCGGGGACATCGGTAGCTTACTCGTTCTTGATCGGACTAGCCTGCCAATTCGGAATTTGATAACATAGCCAAATAAGACTAACCTCGCGATACCTGTAATTCTTATCAAGATGTGTGTGAAGCTTATCCTAGGAAAGGTTGGGCCCTGTCTCATCCAAATCGATTATCGTGCTTCCAGAGACATAATCCATTAGCATCGTTTCAGTGGAATACTTTTAATGTAAGCAACTAGTTTGAAATGAGAAATTTGCTACATGATTATTAGCAGATTAACTTTTGGAGTTGATTTTCCAGGTGTTGTAAACCCTAAGTACGGGCAGGCTTCTTTTTGTTTGTTTGAAGTTGGTAAATCATCCTTACTCGGTGGAATGTTCCACTATTTTATCTTATATTTTGAATGTATTTTTTGCCTAAATCCAAGACTCACTAGTGTGGATGAGGGAGAGAAAAAAGAACTGAAGTTACTCATTTGCCAATTTTTATTAACTTTTCCATTGAGGATATGCTGTCCTTTGGATGGATCTATGTGTGGGAAATACTTTCAATGAACATCGTATGCATATTTCCTGGCCCCTTGATTCTCTATCTGTCTAAAGTTATACTTCGATGCTATGCTGTTCTATGTAACTCAACACTGAGGGGCATAGAAGGAGAAAGCTTCCCAGCTCTTTTCATGGAGTTGTTTTCTTCTATAACCTGTCTCCCATGAAGTTGGGATCTTCTACTTTTATTCTAAAGTTTCCTGATTCCAATTTTTATGCAATGCTTTGATTCATGCTCCTAAATGGCTTTTGCGGCCTTGTGATATGTCTCAGAATTTTTCGGGTGTCTTAACTTCCAATCATATTGCATTTTTCAGGTGACACTCACAGAGGAGCAGATCTCTCTTTCACTTCTTAACAAATGTATGCGCCATAGTTGGAGGTAATTTACAAGAGTTATTTGAACCTTAATCAGTTGATAAATTTTACCTAAACTTGTAGCAGTAATTTAAACCCCCAAAAAACATGCACATACAAAAAACATGCACATAAAGAACTATGATCATTTTTCTTCCTGGCCAGTTCCTTCGCTCTTTCTTCATATAATCTGTTAAAAGGATACATGTTAGAAATCACGATCTCAACAATGAGACAATATTGTCCATTGAACTCTTTGATTTTCCCAAAAATAGATGCTTCTCATAATTATTAACCATTTATTTAGCCATCCTGAACTCTTTGAAGTACTCTCCTACCAATTTGAAGTACTCTCCTACCAATTCTCAAAGATACTAGTACTCTCCTACCTATCCTCAACAATAATTTGTCCAAAGAGGGGAGTATACAATTCTCAACTAAGTACTCTCCTACCTATCCTCAACAATAATTTGTCCAAAGAGGGGAGTATACAGGTTAATTATAGTATATCTTTGGTCCATATTACGAAGTTGAACTAATCATTTGTTTTACTGCAAATATTAGACAACAGTAACAGACCAATCAAAAAATGGTTACAGTTACTACAACTATAGAAAGAAAAAAGAACACCAAAATTAAACCATATCATGGTCTACCAAGAAAAAAACCAGCTGACCACGAACATTTTTACATGATATTGACACAATGCCCATTTAAAAGAATTTGAGCCTTGAGTCTCTGCCTGCAACCTCAAAAAAAATCCGCTGCAGGTGCTGTTGAAGATTTCGATCGAATTATTGAGGTAAGATTGATGCCCAATCTATCTCAGAAGGATATTTCTCTAGCATTGAGGTCTCCCAAGCTAGATTCTGATCCCATGGCAGCTCTGTGAAGTCAGGAAATGAAAGATCTGATAAAGGTGAAGACGCTGCAGACCCGTCGCTCTCTGTCACAGCCCGCGACGAGGAGTTCTCCACCTTCACAGCTGCTGTGTCTGCAAGGGAGCAGGATTGGGACCTTGACTTCTTAGCTGCAGTAACAGGCTTCTTTGAGTTGCCTTGTTTCTGTGGCTTGGCCAAGTTATCACAAATTGCTTGGAGCTTTGCATCAACTGAGGAATGTAGAGGGTTATACTCGCCGAATTCGCCTTCAACGCAGGAGCCTTGGTGCTTGAGGTGGGGGAAATTAAGTCTGGCAGAGTCACCTCGAAGCTTGAAGGCTGCCTTATCATATGCCAAGGCAGCTTCTTCAGCAGTGTCAAAGGTACCGAGCCAGAGCCGAGTTCTGTTCCTTGGGAGTCGGATTTCGGCCACCCATTTTCCCCAATGCCGTTGCCTGACCCCTCTGTAA

mRNA sequence

TAAATGATTGTCGTTTACATCATTCAGTCCTGTATTGCATTTCTCCCTTGTTATCGATTCTGTATCTTCTTCGTGCAGATTGAGAGGCAGATTCGAGCAGAATGAGGCGTATTCCCGCTCCTGCTACGGCGCAGTGACACTCACAGAGGAGCAGATCTCTCTTTCACTTCTTAACAAATGTATGCGCCATAGTTGGAGCTCTGTGAAGTCAGGAAATGAAAGATCTGATAAAGGTGAAGACGCTGCAGACCCGTCGCTCTCTGTCACAGCCCGCGACGAGGAGTTCTCCACCTTCACAGCTGCTGTGTCTGCAAGGGAGCAGGATTGGGACCTTGACTTCTTAGCTGCAGTAACAGGCTTCTTTGAGTTGCCTTGTTTCTGTGGCTTGGCCAAGTTATCACAAATTGCTTGGAGCTTTGCATCAACTGAGGAATGTAGAGGGTTATACTCGCCGAATTCGCCTTCAACGCAGGAGCCTTGGTGCTTGAGGTGGGGGAAATTAAGTCTGGCAGAGTCACCTCGAAGCTTGAAGGCTGCCTTATCATATGCCAAGGCAGCTTCTTCAGCAGTGTCAAAGGTACCGAGCCAGAGCCGAGTTCTGTTCCTTGGGAGTCGGATTTCGGCCACCCATTTTCCCCAATGCCGTTGCCTGACCCCTCTGTAA

Coding sequence (CDS)

ATGCGCCATAGTTGGAGCTCTGTGAAGTCAGGAAATGAAAGATCTGATAAAGGTGAAGACGCTGCAGACCCGTCGCTCTCTGTCACAGCCCGCGACGAGGAGTTCTCCACCTTCACAGCTGCTGTGTCTGCAAGGGAGCAGGATTGGGACCTTGACTTCTTAGCTGCAGTAACAGGCTTCTTTGAGTTGCCTTGTTTCTGTGGCTTGGCCAAGTTATCACAAATTGCTTGGAGCTTTGCATCAACTGAGGAATGTAGAGGGTTATACTCGCCGAATTCGCCTTCAACGCAGGAGCCTTGGTGCTTGAGGTGGGGGAAATTAAGTCTGGCAGAGTCACCTCGAAGCTTGAAGGCTGCCTTATCATATGCCAAGGCAGCTTCTTCAGCAGTGTCAAAGGTACCGAGCCAGAGCCGAGTTCTGTTCCTTGGGAGTCGGATTTCGGCCACCCATTTTCCCCAATGCCGTTGCCTGACCCCTCTGTAA

Protein sequence

MRHSWSSVKSGNERSDKGEDAADPSLSVTARDEEFSTFTAAVSAREQDWDLDFLAAVTGFFELPCFCGLAKLSQIAWSFASTEECRGLYSPNSPSTQEPWCLRWGKLSLAESPRSLKAALSYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTPL
Homology
[Close]
BLAST of Carg03066 vs. NCBI nr
Match: KAG7024638.1 (hypothetical protein SDJN02_13456 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MRHSWSSVKSGNERSDKGEDAADPSLSVTARDEEFSTFTAAVSAREQDWDLDFLAAVTGF 60
           MRHSWSSVKSGNERSDKGEDAADPSLSVTARDEEFSTFTAAVSAREQDWDLDFLAAVTGF
Sbjct: 1   MRHSWSSVKSGNERSDKGEDAADPSLSVTARDEEFSTFTAAVSAREQDWDLDFLAAVTGF 60

Query: 61  FELPCFCGLAKLSQIAWSFASTEECRGLYSPNSPSTQEPWCLRWGKLSLAESPRSLKAAL 120
           FELPCFCGLAKLSQIAWSFASTEECRGLYSPNSPSTQEPWCLRWGKLSLAESPRSLKAAL
Sbjct: 61  FELPCFCGLAKLSQIAWSFASTEECRGLYSPNSPSTQEPWCLRWGKLSLAESPRSLKAAL 120

Query: 121 SYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTPL 161
           SYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTPL
Sbjct: 121 SYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTPL 160

[Close]
BLAST of Carg03066 vs. NCBI nr
Match: KAB8090589.1 (hypothetical protein EE612_015812 [Oryza sativa] >BAS82724.1 Os03g0191850 [Oryza sativa Japonica Group])

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 53/87 (60.92%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 75  IAWSFASTEECRG--LYSPNSPSTQEPWCLRWGKLSLAESPRSLKAALSYAKAASSAVSK 134
           +AWS AST    G   ++P   S+        GKLSLA+SPR   AALSYA AASSAVSK
Sbjct: 1   MAWSLASTAAWSGGPRWAPPRRSS--------GKLSLADSPRRRNAALSYASAASSAVSK 60

Query: 135 VPSQSRVLFLGSRISATHFPQCRCLTP 160
           VPSQ RV   G RISATH PQCRCLTP
Sbjct: 61  VPSQRRVRLRGRRISATHLPQCRCLTP 79

[Close]
BLAST of Carg03066 vs. NCBI nr
Match: KYP60722.1 (hypothetical protein KK1_023134, partial [Cajanus cajan])

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-09
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 113 PRSLKAALSYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTPL 161
           P S+ AA+SYA AASSAVSKVPSQ+ VLFLG+ ISATHFPQC CLTPL
Sbjct: 1   PLSMYAAVSYAMAASSAVSKVPSQTLVLFLGNLISATHFPQCLCLTPL 48

[Close]
BLAST of Carg03066 vs. NCBI nr
Match: RDX66545.1 (hypothetical protein CR513_54676, partial [Mucuna pruriens])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 105 GKLSLAESPRSLKAALSYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTPL 161
           GK +LA  PR L A++SYA AASSAV KVPSQ+R  FLGSRISA HFP  RC  PL
Sbjct: 81  GKFTLALLPRILLASVSYALAASSAVLKVPSQTRTPFLGSRISAAHFPHGRCRIPL 136

[Close]
BLAST of Carg03066 vs. NCBI nr
Match: RYR54827.1 (hypothetical protein Ahy_A06g030094 [Arachis hypogaea])

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-07
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 105 GKLSLAESPRSLKAALSYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTP 160
           GKL  A  PR+L AALSY+ AASSAVSKVPSQ+R+   GSRISA H P   CLTP
Sbjct: 13  GKLVRAFGPRNLIAALSYSLAASSAVSKVPSQTRMCRFGSRISAAHLPHGLCLTP 67

[Close]
BLAST of Carg03066 vs. ExPASy TrEMBL
Match: A0A0P0VU21 (Os03g0191850 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0191850 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.9e-14
Identity = 53/87 (60.92%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 75  IAWSFASTEECRG--LYSPNSPSTQEPWCLRWGKLSLAESPRSLKAALSYAKAASSAVSK 134
           +AWS AST    G   ++P   S+        GKLSLA+SPR   AALSYA AASSAVSK
Sbjct: 1   MAWSLASTAAWSGGPRWAPPRRSS--------GKLSLADSPRRRNAALSYASAASSAVSK 60

Query: 135 VPSQSRVLFLGSRISATHFPQCRCLTP 160
           VPSQ RV   G RISATH PQCRCLTP
Sbjct: 61  VPSQRRVRLRGRRISATHLPQCRCLTP 79

[Close]
BLAST of Carg03066 vs. ExPASy TrEMBL
Match: A0A151T0Y3 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_023134 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 113 PRSLKAALSYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTPL 161
           P S+ AA+SYA AASSAVSKVPSQ+ VLFLG+ ISATHFPQC CLTPL
Sbjct: 1   PLSMYAAVSYAMAASSAVSKVPSQTLVLFLGNLISATHFPQCLCLTPL 48

[Close]
BLAST of Carg03066 vs. ExPASy TrEMBL
Match: A0A371EKF3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_54676 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.2e-08
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 105 GKLSLAESPRSLKAALSYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTPL 161
           GK +LA  PR L A++SYA AASSAV KVPSQ+R  FLGSRISA HFP  RC  PL
Sbjct: 81  GKFTLALLPRILLASVSYALAASSAVLKVPSQTRTPFLGSRISAAHFPHGRCRIPL 136

[Close]
BLAST of Carg03066 vs. ExPASy TrEMBL
Match: A0A445CV74 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g030094 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-07
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 105 GKLSLAESPRSLKAALSYAKAASSAVSKVPSQSRVLFLGSRISATHFPQCRCLTP 160
           GKL  A  PR+L AALSY+ AASSAVSKVPSQ+R+   GSRISA H P   CLTP
Sbjct: 13  GKLVRAFGPRNLIAALSYSLAASSAVSKVPSQTRMCRFGSRISAAHLPHGLCLTP 67

[Close]
BLAST of Carg03066 vs. ExPASy TrEMBL
Match: A0A427APA2 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00027698 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 41/69 (59.42%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 91  PNSPSTQEPWCLRWGKLSLAESPRSLKAALSYAKAASSAVSKVPSQSRVLFLGSRISATH 150
           P SP  Q        KL LA  PR L+AA SYA+AASSAVSKVPS  RV F GSRISA +
Sbjct: 136 PRSPGRQ--------KLVLALGPRRLRAASSYARAASSAVSKVPSHLRVFFQGSRISAAN 195

Query: 151 FPQCRCLTP 160
            P  R LTP
Sbjct: 196 RPHGRFLTP 196

The following BLAST results are available for this feature:
BLAST of Carg03066 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024638.12.4e-83100.00hypothetical protein SDJN02_13456 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAB8090589.12.0e-1360.92hypothetical protein EE612_015812 [Oryza sativa] >BAS82724.1 Os03g0191850 [Oryza... [more]
KYP60722.13.0e-0979.17hypothetical protein KK1_023134, partial [Cajanus cajan][more]
RDX66545.11.3e-0767.86hypothetical protein CR513_54676, partial [Mucuna pruriens][more]
RYR54827.18.3e-0767.27hypothetical protein Ahy_A06g030094 [Arachis hypogaea][more]
BLAST of Carg03066 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03066 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0P0VU219.9e-1460.92Os03g0191850 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0191850 PE... [more]
A0A151T0Y31.5e-0979.17Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_023134 PE=4 S... [more]
A0A371EKF36.2e-0867.86Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_54676 P... [more]
A0A445CV744.0e-0767.27Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g030094 PE=4 SV=1[more]
A0A427APA21.2e-0659.42Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00027698 PE=4 SV=1[more]
BLAST of Carg03066 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03066-RACarg03066-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane