Carg03045 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03045
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein Tat like
LocationCarg_Chr09: 3194110 .. 3195296 (-)
RNA-Seq ExpressionCarg03045
SyntenyCarg03045
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTATAACTTTGATGGTTTATCCTCATGTCATCCAGAAAAGGCTACAATAGCACGCCCCCTCGATCAGCTCAGATGGCCTTCCATTGTCCACCATTATTTTTCAAATTGTTTCTCCTGCGTCGGATTGTTTGGCGTTGTTGGTGAGCGATATGAACGGTGCGCTTACTGCTAGCATTTTTCAAATATATTGACTGAACATTCACTTTATGTAGCTACTGCAAGCTTTTACTCTGTCCAAATGGCAAAGCTTATGGAGGGAAGTACTGTAGTTTCATTCAAATATTGATCTCCTTTTCTTATAAACAACTTTTGTTGATTCCATATTGTACAGAAGGACCCAGCTGCTGAGATTGTAATTGCCAAACCATCCTTGAACTGGCTTTTGTGTTCATTTCTTTTTCATTCCAAAAGTCACCAATTTTGAATCACTTTTTTAGGCGTCAAACTGGATTGCTTTGATCTTGCTACTGTACACACTTACAGATCATTCAATTTGATTTGATGGGTTCTTAGTTTTATGATTTAAATTTCATAATCTTGTTCATGATTGATTGAGGTCTGTGTTTCAGAAATGGGTCCAAACTAGATTCCTTCTCCTCTTACTCTCTTTTGTGGCAAACAAGAACAAGCAAGGATTTGCCTTGCTCAGCAATCAATCCAATGAAATTCTCCACTACAAACTCAGTTCCCTCTTCTTTAGTTCATTTCACCAAGCATAGCATAAAGTGCACCTCACTCCATCCTCATTCCTTTCCCTCAACTTTTAACCATTACCAAACTGGGTTCCAAAAGATTGCAGGAGGAACCAATCCAATGGTTCCCAGTTTGGATCTGATAGCTCTTGCTTGTCTCTATGGCTGCTTCATTGCACTCACTCTCCTTCTCCTCATCTCCTCCCTCTTGGTTGTGTTCTTTCTATCAGCTACCCTCGCTCTGTTTTCAGTATTTGTGGGGGATTTGTACGATGCGTACTCTGTTTTGTGTCCATATTATGAAGAACTCAAAGCTGAAACTGAATTGGGTGTCTGTTTAATGATGTATGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTCTTTTCCGACAGCAAAATCTAAGATTCACTGTAAGGCTTCCACAGATGAAGGGAAAAGAAAAACGGTGGCTTGGGTTTGGGCTTGGCATGCTATGA

mRNA sequence

ATGAGTTATAACTTTGATGGTTTATCCTCATGTCATCCAGAAAAGGCTACAATAGCACGCCCCCTCGATCAGCTCAGATGGCCTTCCATTGTCCACCATTATTTTTCAAATTGTTTCTCCTGCGTCGGATTGTTTGGCGTTGTTGGTGAGCGATATGAACGAAATGGGTCCAAACTAGATTCCTTCTCCTCTTACTCTCTTTTGTGGCAAACAAGAACAAGCAAGGATTTGCCTTGCTCAGCAATCAATCCAATGAAATTCTCCACTACAAACTCAGTTCCCTCTTCTTTAGTTCATTTCACCAAGCATAGCATAAAGTGCACCTCACTCCATCCTCATTCCTTTCCCTCAACTTTTAACCATTACCAAACTGGGTTCCAAAAGATTGCAGGAGGAACCAATCCAATGGTTCCCAGTTTGGATCTGATAGCTCTTGCTTGTCTCTATGGCTGCTTCATTGCACTCACTCTCCTTCTCCTCATCTCCTCCCTCTTGGTTGTGTTCTTTCTATCAGCTACCCTCGCTCTGTTTTCAGTATTTGTGGGGGATTTGTACGATGCGTACTCTGTTTTGTGTCCATATTATGAAGAACTCAAAGCTGAAACTGAATTGGGTGTCTGTTTAATGATGTATGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTCTTTTCCGACAGCAAAATCTAAGATTCACTGTAAGGCTTCCACAGATGAAGGGAAAAGAAAAACGGTGGCTTGGGTTTGGGCTTGGCATGCTATGA

Coding sequence (CDS)

ATGAGTTATAACTTTGATGGTTTATCCTCATGTCATCCAGAAAAGGCTACAATAGCACGCCCCCTCGATCAGCTCAGATGGCCTTCCATTGTCCACCATTATTTTTCAAATTGTTTCTCCTGCGTCGGATTGTTTGGCGTTGTTGGTGAGCGATATGAACGAAATGGGTCCAAACTAGATTCCTTCTCCTCTTACTCTCTTTTGTGGCAAACAAGAACAAGCAAGGATTTGCCTTGCTCAGCAATCAATCCAATGAAATTCTCCACTACAAACTCAGTTCCCTCTTCTTTAGTTCATTTCACCAAGCATAGCATAAAGTGCACCTCACTCCATCCTCATTCCTTTCCCTCAACTTTTAACCATTACCAAACTGGGTTCCAAAAGATTGCAGGAGGAACCAATCCAATGGTTCCCAGTTTGGATCTGATAGCTCTTGCTTGTCTCTATGGCTGCTTCATTGCACTCACTCTCCTTCTCCTCATCTCCTCCCTCTTGGTTGTGTTCTTTCTATCAGCTACCCTCGCTCTGTTTTCAGTATTTGTGGGGGATTTGTACGATGCGTACTCTGTTTTGTGTCCATATTATGAAGAACTCAAAGCTGAAACTGAATTGGGTGTCTGTTTAATGATGTATGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTCTTTTCCGACAGCAAAATCTAAGATTCACTGTAAGGCTTCCACAGATGAAGGGAAAAGAAAAACGGTGGCTTGGGTTTGGGCTTGGCATGCTATGA

Protein sequence

MSYNFDGLSSCHPEKATIARPLDQLRWPSIVHHYFSNCFSCVGLFGVVGERYERNGSKLDSFSSYSLLWQTRTSKDLPCSAINPMKFSTTNSVPSSLVHFTKHSIKCTSLHPHSFPSTFNHYQTGFQKIAGGTNPMVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYYEELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMKGKEKRWLGFGLGML
Homology
BLAST of Carg03045 vs. NCBI nr
Match: KAG7024618.1 (hypothetical protein SDJN02_13436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 518.1 bits (1333), Expect = 4.4e-143
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0

Query: 1   MSYNFDGLSSCHPEKATIARPLDQLRWPSIVHHYFSNCFSCVGLFGVVGERYERNGSKLD 60
           MSYNFDGLSSCHPEKATIARPLDQLRWPSIVHHYFSNCFSCVGLFGVVGERYERNGSKLD
Sbjct: 1   MSYNFDGLSSCHPEKATIARPLDQLRWPSIVHHYFSNCFSCVGLFGVVGERYERNGSKLD 60

Query: 61  SFSSYSLLWQTRTSKDLPCSAINPMKFSTTNSVPSSLVHFTKHSIKCTSLHPHSFPSTFN 120
           SFSSYSLLWQTRTSKDLPCSAINPMKFSTTNSVPSSLVHFTKHSIKCTSLHPHSFPSTFN
Sbjct: 61  SFSSYSLLWQTRTSKDLPCSAINPMKFSTTNSVPSSLVHFTKHSIKCTSLHPHSFPSTFN 120

Query: 121 HYQTGFQKIAGGTNPMVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVF 180
           HYQTGFQKIAGGTNPMVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVF
Sbjct: 121 HYQTGFQKIAGGTNPMVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVF 180

Query: 181 VGDLYDAYSVLCPYYEELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVRLP 240
           VGDLYDAYSVLCPYYEELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVRLP
Sbjct: 181 VGDLYDAYSVLCPYYEELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVRLP 240

Query: 241 QMKGKEKRWLGFGLGML 258
           QMKGKEKRWLGFGLGML
Sbjct: 241 QMKGKEKRWLGFGLGML 257

BLAST of Carg03045 vs. NCBI nr
Match: KAG6591737.1 (putative beta-1,4-xylosyltransferase IRX9H, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400.6 bits (1028), Expect = 1.0e-107
Identity = 208/221 (94.12%), Postives = 210/221 (95.02%), Query Frame = 0

Query: 38  CFSCVGLFGVVGERY-ERNGSKLDSFSSYSLLWQTRTSKDLPCSAINPMKFSTTNSVPSS 97
           C  C  L    G+ Y  +NGSKLDSFSSYSLLWQTRTSKDLPCSAINPMKFSTTNSVPSS
Sbjct: 426 CCYCKLLLCPNGKAYGGKNGSKLDSFSSYSLLWQTRTSKDLPCSAINPMKFSTTNSVPSS 485

Query: 98  LVHFTKHSIKCTSLHPHSFPSTFNHYQTGFQKIAGGTNPMVPSLDLIALACLYGCFIALT 157
           LVHFTKHSIKCTSLHPHSFPSTFNHYQTGFQKIAGGTNPMVPSLDLIALACLYGCFIALT
Sbjct: 486 LVHFTKHSIKCTSLHPHSFPSTFNHYQTGFQKIAGGTNPMVPSLDLIALACLYGCFIALT 545

Query: 158 LLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYYEELKAETELGVCLMMYGVMGF 217
           LLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYYEELKAETELGVCLMMYGVMGF
Sbjct: 546 LLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYYEELKAETELGVCLMMYGVMGF 605

Query: 218 GVDVVLGIKSLFRQQNLRFTVRLPQMKGKEKRWLGFGLGML 258
           GVDVVLGIKSLFRQQNLRFTVRLPQMKGKEKRWLGFGLGML
Sbjct: 606 GVDVVLGIKSLFRQQNLRFTVRLPQMKGKEKRWLGFGLGML 646

BLAST of Carg03045 vs. NCBI nr
Match: KGN60326.1 (hypothetical protein Csa_001171 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-30
Identity = 82/120 (68.33%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 195
           MVP+LDL+ALACLYG FIAL LLL+I  LL+V FLS++LALFSVFV DL+DAYSV+  YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60

Query: 196 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRF-TVRLPQMKGKEKRWLGFGL 255
           E++KAE ELG+ L+++GVMGFGVDVVL  KSL RQQNLR   +R  QMK KE   LGFG+
Sbjct: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120

BLAST of Carg03045 vs. NCBI nr
Match: KAA0038615.1 (hypothetical protein E6C27_scaffold92G001450 [Cucumis melo var. makuwa] >TYK31214.1 hypothetical protein E5676_scaffold455G005000 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-29
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 195
           MVP+LDL+ALACLYG FIAL LLL+I  LL+V FLS++LALFSVFV DLYDAYSV+  YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLVIFFLLIVLFLSSSLALFSVFVSDLYDAYSVMSLYY 60

Query: 196 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRF-TVRLPQMKGKEKRWLGFGL 255
           E++KAE ELG+ L+M+GVMGFGVDVVL  KSL RQQNL    +R  QMK KEK    FG+
Sbjct: 61  EDVKAEIELGLSLIMFGVMGFGVDVVLRTKSLLRQQNLILKNIRQQQMKVKEKWRFEFGM 120

BLAST of Carg03045 vs. NCBI nr
Match: KAF9662227.1 (hypothetical protein SADUNF_Sadunf18G0031300 [Salix dunnii])

HSP 1 Score: 68.9 bits (167), Expect = 7.1e-08
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 0

Query: 131 GGTNP-MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYS 190
           G T P MVP+LDLI LA L+GCFIA  LL++IS++L    L+ +LALFS+ + DL+  +S
Sbjct: 175 GQTLPVMVPNLDLIILASLHGCFIACVLLVVISAILSALVLAFSLALFSISIIDLHGVFS 234

Query: 191 VLCPYYEELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVR 239
            +      LK   +LG+ L++  +M + + V+L  K LF++    F VR
Sbjct: 235 SVSRLILPLKENLKLGLALLVVMIMYYAIGVMLASKPLFKRMVSEFKVR 283

BLAST of Carg03045 vs. ExPASy TrEMBL
Match: A0A0A0LJX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895720 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 82/120 (68.33%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 195
           MVP+LDL+ALACLYG FIAL LLL+I  LL+V FLS++LALFSVFV DL+DAYSV+  YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60

Query: 196 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRF-TVRLPQMKGKEKRWLGFGL 255
           E++KAE ELG+ L+++GVMGFGVDVVL  KSL RQQNLR   +R  QMK KE   LGFG+
Sbjct: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120

BLAST of Carg03045 vs. ExPASy TrEMBL
Match: A0A5A7TB69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005000 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 195
           MVP+LDL+ALACLYG FIAL LLL+I  LL+V FLS++LALFSVFV DLYDAYSV+  YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLVIFFLLIVLFLSSSLALFSVFVSDLYDAYSVMSLYY 60

Query: 196 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRF-TVRLPQMKGKEKRWLGFGL 255
           E++KAE ELG+ L+M+GVMGFGVDVVL  KSL RQQNL    +R  QMK KEK    FG+
Sbjct: 61  EDVKAEIELGLSLIMFGVMGFGVDVVLRTKSLLRQQNLILKNIRQQQMKVKEKWRFEFGM 120

BLAST of Carg03045 vs. ExPASy TrEMBL
Match: A0A6A1UX23 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G014171 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-06
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 195
           M+P+LDL+ LA LYG FIA  LL ++S +L+   L+ ++ LFS+ V DL+  +SV   +Y
Sbjct: 1   MIPNLDLLLLAFLYGSFIACVLLAVLSVILLSLCLAFSVTLFSIVVIDLHYVFSVCSLHY 60

Query: 196 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQ 232
             LKA  +LG  L++Y +M + V +VL  K+   Q+
Sbjct: 61  ITLKANLQLGSVLILYIIMRYSVPMVLASKASLEQK 96

BLAST of Carg03045 vs. ExPASy TrEMBL
Match: A0A5N5J7Y9 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027916 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 195
           MVP+LDLI L  L+GCFIA  L+++IS++L    L+ +LALFS+ + DL+  +S +    
Sbjct: 1   MVPNLDLIILTFLHGCFIACVLVVVISAILSALVLAFSLALFSISIIDLHGVFSSVSRLI 60

Query: 196 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLF 229
             LK   +LG+ L++  +  + + VVL  K LF
Sbjct: 61  LPLKENLKLGLALLVVTITYYAIGVVLASKPLF 93

BLAST of Carg03045 vs. ExPASy TrEMBL
Match: A0A6N2NHX1 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS506179 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYD-AYSVLCPY 195
           MVP+LDLI L  L+GCFIA  LL++IS++ +   L+ +LALFS+ + DL+   +S +   
Sbjct: 1   MVPNLDLIILTFLHGCFIACVLLVVISAISLALVLALSLALFSISIIDLHGVVFSSVSRL 60

Query: 196 YEELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRF 236
              LK   +LG+ L++  +M + + VVL  K LF + +  F
Sbjct: 61  ILPLKENLKLGLALLVVTIMYYAIGVVLASKPLFDRMDSEF 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7024618.14.4e-143100.00hypothetical protein SDJN02_13436, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591737.11.0e-10794.12putative beta-1,4-xylosyltransferase IRX9H, partial [Cucurbita argyrosperma subs... [more]
KGN60326.13.9e-3068.33hypothetical protein Csa_001171 [Cucumis sativus][more]
KAA0038615.12.5e-2968.33hypothetical protein E6C27_scaffold92G001450 [Cucumis melo var. makuwa] >TYK3121... [more]
KAF9662227.17.1e-0842.20hypothetical protein SADUNF_Sadunf18G0031300 [Salix dunnii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJX11.9e-3068.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895720 PE=4 SV=1[more]
A0A5A7TB691.2e-2968.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6A1UX232.5e-0641.67Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G014171 PE=4 SV=1[more]
A0A5N5J7Y92.7e-0540.86Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027916 PE=4 SV=1[more]
A0A6N2NHX12.7e-0539.60Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS506179 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03045-RACarg03045-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane