Carg03026 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03026
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionamino acid permease 6-like
LocationCarg_Chr09: 3096069 .. 3096610 (+)
RNA-Seq ExpressionCarg03026
SyntenyCarg03026
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCATACTTCTTCCCCTTCACTTCCCATTCCACCCCTCGATGGCTGCACATCGATTGCCTAAGAATTCCCCCAAAGCTGCTCTCGGTTTCGACAAGAACTTTGACCACGATGGCCAATGTCTGCATTGCTTGTCCATCTATAATTGGTGCTTACCAGGTGAAATCCGCCGACATGAATGCCATTTAACTCCTTAGTACTCCCATCACTTTATGTTCTAAGTTCTGTAAATGAACGCTATAACCTGCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGATAAATGGTGCAGCACAAAGTGGGCAGGAAAGTAAATTCATGACAAAGGAGCACAGTATTAACTTACCTTTTAATGGAGAGTATCAGCTCAACTACTTCCCCATAGAGGTGTACTTAGCAAGAACTAAATTGCCCAGATTCTCTTTCACCTGCATCTGGCCTGAAGATATTGAGCTCGAGCTGGATCCATTCAAGGCTTGGCCCAAGATGTCAAGACATACAAACCCTTCAAAACTTGAACTGATTAGTACAAAATCCTAG

mRNA sequence

TATCATACTTCTTCCCCTTCACTTCCCATTCCACCCCTCGATGGCTGCACATCGATTGCCTAAGAATTCCCCCAAAGCTGCTCTCGGTTTCGACAAGAACTTTGACCACGATGGCCAATGTCTGCATTGCTTGTCCATCTATAATTGGTGCTTACCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGATAAATGGTGCAGCACAAAGTGGGCAGGAAAGTAAATTCATGACAAAGGAGCACAGTATTAACTTACCTTTTAATGGAGAGTATCAGCTCAACTACTTCCCCATAGAGGTGTACTTAGCAAGAACTAAATTGCCCAGATTCTCTTTCACCTGCATCTGGCCTGAAGATATTGAGCTCGAGCTGGATCCATTCAAGGCTTGGCCCAAGATGTCAAGACATACAAACCCTTCAAAACTTGAACTGATTAGTACAAAATCCTAG

Coding sequence (CDS)

ATGGCTGCACATCGATTGCCTAAGAATTCCCCCAAAGCTGCTCTCGGTTTCGACAAGAACTTTGACCACGATGGCCAATGTCTGCATTGCTTGTCCATCTATAATTGGTGCTTACCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGATAAATGGTGCAGCACAAAGTGGGCAGGAAAGTAAATTCATGACAAAGGAGCACAGTATTAACTTACCTTTTAATGGAGAGTATCAGCTCAACTACTTCCCCATAGAGGTGTACTTAGCAAGAACTAAATTGCCCAGATTCTCTTTCACCTGCATCTGGCCTGAAGATATTGAGCTCGAGCTGGATCCATTCAAGGCTTGGCCCAAGATGTCAAGACATACAAACCCTTCAAAACTTGAACTGATTAGTACAAAATCCTAG

Protein sequence

MAAHRLPKNSPKAALGFDKNFDHDGQCLHCLSIYNWCLPGLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLNYFPIEVYLARTKLPRFSFTCIWPEDIELELDPFKAWPKMSRHTNPSKLELISTKS
Homology
BLAST of Carg03026 vs. NCBI nr
Match: KAG6591718.1 (hypothetical protein SDJN03_14064, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024599.1 hypothetical protein SDJN02_13417 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.9 bits (764), Expect = 2.2e-77
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MAAHRLPKNSPKAALGFDKNFDHDGQCLHCLSIYNWCLPGLLPTCCMALWINGAAQSGQE 60
           MAAHRLPKNSPKAALGFDKNFDHDGQCLHCLSIYNWCLPGLLPTCCMALWINGAAQSGQE
Sbjct: 1   MAAHRLPKNSPKAALGFDKNFDHDGQCLHCLSIYNWCLPGLLPTCCMALWINGAAQSGQE 60

Query: 61  SKFMTKEHSINLPFNGEYQLNYFPIEVYLARTKLPRFSFTCIWPEDIELELDPFKAWPKM 120
           SKFMTKEHSINLPFNGEYQLNYFPIEVYLARTKLPRFSFTCIWPEDIELELDPFKAWPKM
Sbjct: 61  SKFMTKEHSINLPFNGEYQLNYFPIEVYLARTKLPRFSFTCIWPEDIELELDPFKAWPKM 120

Query: 121 SRHTNPSKLELISTKS 137
           SRHTNPSKLELISTKS
Sbjct: 121 SRHTNPSKLELISTKS 136

BLAST of Carg03026 vs. NCBI nr
Match: XP_038896751.1 (amino acid permease 6-like [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 43/120 (35.83%), Postives = 51/120 (42.50%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ESKF+T EH INLPFNGEYQLN   
Sbjct: 332 VHLIGAYQVFCQPFYGFVEKWCNKKW--------PESKFITTEHIINLPFNGEYQLNYFR 391

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 392 LIWRTVYVIMTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 443

BLAST of Carg03026 vs. NCBI nr
Match: XP_004136237.1 (amino acid permease 6 [Cucumis sativus] >KAE8651407.1 hypothetical protein Csa_001691 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-06
Identity = 42/120 (35.00%), Postives = 51/120 (42.50%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH+INLPFNGEYQLN   
Sbjct: 331 VHLIGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHTINLPFNGEYQLNYFR 390

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 391 LIWRTIYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 442

BLAST of Carg03026 vs. NCBI nr
Match: XP_022159715.1 (amino acid permease 6-like [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-06
Identity = 42/120 (35.00%), Postives = 51/120 (42.50%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ESKF+T EH INLPF+GEYQL+   
Sbjct: 339 VHLVGAYQVFCQPVYGFVEKWCSTKW--------PESKFITTEHLINLPFHGEYQLSYFR 398

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFPIE+Y+ARTKLPRFSFT  W
Sbjct: 399 LIWRTAYVIVTAVIAMIFPFFNDFLGLLGAASFWPLTVYFPIEMYIARTKLPRFSFTWTW 450

BLAST of Carg03026 vs. NCBI nr
Match: XP_008466098.1 (PREDICTED: amino acid permease 6 [Cucumis melo] >KAA0038637.1 amino acid permease 6 [Cucumis melo var. makuwa] >TYK31237.1 amino acid permease 6 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 7.8e-06
Identity = 42/120 (35.00%), Postives = 50/120 (41.67%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH INLPFNGEYQLN   
Sbjct: 164 VHLVGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHVINLPFNGEYQLNYFR 223

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 224 LIWRTVYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 275

BLAST of Carg03026 vs. ExPASy TrEMBL
Match: A0A0A0LE46 (Aa_trans domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G894480 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 42/120 (35.00%), Postives = 51/120 (42.50%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH+INLPFNGEYQLN   
Sbjct: 76  VHLIGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHTINLPFNGEYQLNYFR 135

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 136 LIWRTIYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 187

BLAST of Carg03026 vs. ExPASy TrEMBL
Match: A0A6J1DZJ0 (amino acid permease 6-like OS=Momordica charantia OX=3673 GN=LOC111026053 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 42/120 (35.00%), Postives = 51/120 (42.50%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ESKF+T EH INLPF+GEYQL+   
Sbjct: 339 VHLVGAYQVFCQPVYGFVEKWCSTKW--------PESKFITTEHLINLPFHGEYQLSYFR 398

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFPIE+Y+ARTKLPRFSFT  W
Sbjct: 399 LIWRTAYVIVTAVIAMIFPFFNDFLGLLGAASFWPLTVYFPIEMYIARTKLPRFSFTWTW 450

BLAST of Carg03026 vs. ExPASy TrEMBL
Match: A0A5A7TAP3 (Amino acid permease 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005250 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 42/120 (35.00%), Postives = 50/120 (41.67%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH INLPFNGEYQLN   
Sbjct: 164 VHLVGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHVINLPFNGEYQLNYFR 223

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 224 LIWRTVYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 275

BLAST of Carg03026 vs. ExPASy TrEMBL
Match: A0A1S3CQR5 (amino acid permease 6 OS=Cucumis melo OX=3656 GN=LOC103503623 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 42/120 (35.00%), Postives = 50/120 (41.67%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ES F+T EH INLPFNGEYQLN   
Sbjct: 164 VHLVGAYQVFCQPFYGFVEKWCNKKW--------PESTFITTEHVINLPFNGEYQLNYFR 223

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFS T IW
Sbjct: 224 LIWRTVYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIW 275

BLAST of Carg03026 vs. ExPASy TrEMBL
Match: A0A6J1FRQ3 (amino acid permease 6-like OS=Cucurbita moschata OX=3662 GN=LOC111446640 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.9e-06
Identity = 41/120 (34.17%), Postives = 50/120 (41.67%), Query Frame = 0

Query: 28  LHCLSIYN-WCLP--GLLPTCCMALWINGAAQSGQESKFMTKEHSINLPFNGEYQLN--- 87
           +H +  Y  +C P  G +   C   W         ESKF+T EH I LPFNGEY L+   
Sbjct: 331 VHLVGAYQVFCQPVYGFVEKWCSTRW--------PESKFITTEHIIKLPFNGEYPLSYFR 390

Query: 88  --------------------------------------YFPIEVYLARTKLPRFSFTCIW 104
                                                 YFP+E+Y+ARTKLPRFSFT IW
Sbjct: 391 LIWRTAYVIVTTVIAMIFPFFNAFLALLGATSFWPLTVYFPVEMYIARTKLPRFSFTWIW 442

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6591718.12.2e-77100.00hypothetical protein SDJN03_14064, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038896751.11.2e-0635.83amino acid permease 6-like [Benincasa hispida][more]
XP_004136237.12.7e-0635.00amino acid permease 6 [Cucumis sativus] >KAE8651407.1 hypothetical protein Csa_0... [more]
XP_022159715.14.6e-0635.00amino acid permease 6-like [Momordica charantia][more]
XP_008466098.17.8e-0635.00PREDICTED: amino acid permease 6 [Cucumis melo] >KAA0038637.1 amino acid permeas... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LE461.3e-0635.00Aa_trans domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G894480 PE... [more]
A0A6J1DZJ02.2e-0635.00amino acid permease 6-like OS=Momordica charantia OX=3673 GN=LOC111026053 PE=3 S... [more]
A0A5A7TAP33.8e-0635.00Amino acid permease 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45... [more]
A0A1S3CQR53.8e-0635.00amino acid permease 6 OS=Cucumis melo OX=3656 GN=LOC103503623 PE=3 SV=1[more]
A0A6J1FRQ34.9e-0634.17amino acid permease 6-like OS=Cucurbita moschata OX=3662 GN=LOC111446640 PE=3 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03026-RACarg03026-RAmRNA