Carg03000 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03000
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 2905898 .. 2906659 (-)
RNA-Seq ExpressionCarg03000
SyntenyCarg03000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCGATCGAGAGAACATTGGAGCGAGAGAGATTACCTGATAGGTGCGACGGTGAGCGATGGAAAGTCGACGAGGCACGTCACCGGCACCGAGGCGGCGTCGTTGAGGCGGCGCAATGGAGTGAGGAGGTCTCGCCAGAGAGCACTGCCAGTAGCGTGGGAAGAGCGTGAGTGAGAGAGGGGCGAGAAAGTAGGAGGAGACTATAGACATATTTTTGGCTAAATTACCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAACTCTGAATTTTTTAATTTTTTTAATTAAATAATTAAATTTTTTGTCACGTGACATTATTTATAACATTAGTCATTTAATTCGAAATTATAACTTATATATAAAAAAATTATTATGTAAATGACATTATTGATATATTTTGAGACAATATATAATGGTAATATCGAGTATACCTTTTATTATAATTATTTTTATAATTTATTTTAACTATTTTTTTTTTGTGTAATATATTTTAATATTAAATTTGAAATTAAAAAATTAAAATACTGATAAAATTTAATGTAACCTAATACTGATAAAATAAAATAATTAAATTTTAATTCCCTCTTCATTAATTATTTGTCACACGAGCTTCTTCTATTTCGCACGCAGAGCTCTCTCTATAAATACTTGGACAGACTTCAGAGACGGTTCCCGGCTTGGGGAGCGCGAAAATTGTAGAATGATCGGAACCTTCACTGCTGCAACTGCAGATTATTGGTCGGAGATTGATCACCGCTAG

mRNA sequence

ATGGAATCGATCGAGAGAACATTGGAGCGAGAGAGATTACCTGATAGGTGCGACGGTGAGCGATGGAAAGTCGACGAGGCACGTCACCGGCACCGAGGCGGCGTCGTTGAGGCGGCGCAATGGAGTGAGGAGGTCTCGCCAGAGAGCACTGCCAGTAGCGTGGGAAGAGCAGCTCTCTCTATAAATACTTGGACAGACTTCAGAGACGGTTCCCGGCTTGGGGAGCGCGAAAATTGTAGAATGATCGGAACCTTCACTGCTGCAACTGCAGATTATTGGTCGGAGATTGATCACCGCTAG

Coding sequence (CDS)

ATGGAATCGATCGAGAGAACATTGGAGCGAGAGAGATTACCTGATAGGTGCGACGGTGAGCGATGGAAAGTCGACGAGGCACGTCACCGGCACCGAGGCGGCGTCGTTGAGGCGGCGCAATGGAGTGAGGAGGTCTCGCCAGAGAGCACTGCCAGTAGCGTGGGAAGAGCAGCTCTCTCTATAAATACTTGGACAGACTTCAGAGACGGTTCCCGGCTTGGGGAGCGCGAAAATTGTAGAATGATCGGAACCTTCACTGCTGCAACTGCAGATTATTGGTCGGAGATTGATCACCGCTAG

Protein sequence

MESIERTLERERLPDRCDGERWKVDEARHRHRGGVVEAAQWSEEVSPESTASSVGRAALSINTWTDFRDGSRLGERENCRMIGTFTAATADYWSEIDHR
Homology
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BLAST of Carg03000 vs. NCBI nr
Match: KAG7024573.1 (hypothetical protein SDJN02_13391, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.1 bits (523), Expect = 1.4e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MESIERTLERERLPDRCDGERWKVDEARHRHRGGVVEAAQWSEEVSPESTASSVGRAALS 60
           MESIERTLERERLPDRCDGERWKVDEARHRHRGGVVEAAQWSEEVSPESTASSVGRAALS
Sbjct: 1   MESIERTLERERLPDRCDGERWKVDEARHRHRGGVVEAAQWSEEVSPESTASSVGRAALS 60

Query: 61  INTWTDFRDGSRLGERENCRMIGTFTAATADYWSEIDHR 100
           INTWTDFRDGSRLGERENCRMIGTFTAATADYWSEIDHR
Sbjct: 61  INTWTDFRDGSRLGERENCRMIGTFTAATADYWSEIDHR 99

The following BLAST results are available for this feature:
BLAST of Carg03000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024573.11.4e-49100.00hypothetical protein SDJN02_13391, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03000-RACarg03000-RAmRNA