Carg02981 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02981
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpre-rRNA-processing protein TSR2 homolog
LocationCarg_Chr09: 2788599 .. 2792990 (-)
RNA-Seq ExpressionCarg02981
SyntenyCarg02981
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAAAATTCAATTTTCCCTTTTCTTCTCCAAGTAAACTGCATAGGGCCGAGCTCATATCTTCTCGGTTGTGAAGCCCTCTGAATCGCAATCGCAGCTCTCTTTCGATCGATCATCGCCCTCAATTTCATTCAGCGCTCTCAGCTGTTTCAAGGTTTGTTCCTAATAATGTGTTTGTTTTTGGCTTGCTTTGCTGAATGAATGTTTGTTCTAGATTTGTTCTACATTTGATCTTGGTTTGTCACTCATGGTTCGAAGTGAGCAATTACGCGATGAATCTCTCTCTTTCGTTTCATATTTCTTTATGAAATTATCTCTTCAATTGTGAACTTGTTATTTTGAGATACCGAAATTCTGTACAACAGTCAAACTATAGCAACTTCGTTGTTTGGCACACGATTAGTCCTAACTTGGTTGGCAATCTTCTCTTCGTTAAAAGTTTTAAAAAGGGGAAGAAAATGTGTTTTGTTCCTTGTTATGTGCTCACATAATGATAAGATAGACAGACAAGAAGATTACGCTTGTTATTCTACTTGCTCTTTGATAATTGGGGTTTTAGGGTTCTACGTTTGGAGGCGGAGAGATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCCGACATTCTCACATGGTTTACTCAGAACAAAGGTAATTTTTGCCCTTTCCACTTGGGTAATCTTTTACCTTCCTTCGTGCATTGTTCCTCTTTCTGCAGTTTCTCAGGTCCAGTAGTGTTGTTTATTGCAAGCAATTAAATATTTATTTGTTGTAACTTCGTGAAGAACCAGTTTGTATAATCATAGAAAAGGGAAATTCATTTAGTGGCTTAATAAGCGTTTTAAAATGTCCACAGAGGCGCATGCCTAGGCATGGCCCCGACGTCTCGCTTCAAAGAAGTAAGGCTCCCCCAATGAAGAATACCCGAGGAAATCTCCCTTAATTACTTTTAAGAAAGAAACTCATGAATATTGTTAAAAAGCATTCTGAAATAAACTTAAAATTTTCATCATCTTATTATTTGTAATGCTTTTTTTTTTCTTTGTACATAAAAAAAATTATATGTATATATCTTTTGTTTGGTAAAAAAAATCCAGAAATATAGTTTCTAGCTTGTATTTTGTCTGATATTCACTTAGGTCGTAGTGGAACTTGATACCATGTAAGCAAGACGTTTATAGTTTCCCATTAGAATACTTCATTTTTTTTTATTTTGATCTGAGAGAGTTATAGTTTTTATCTTGCAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGTATATTTTATACCCTTAATTCTTGTTAGTCTTTGTGGAAAGCCCCTTTCCTCATACTTAAGACCTAGTTAATACAATTTTTTTGCTTGAGTCTAGTTGAAATTCATTTACTTAATCAAATAAATTTATTGTATATTGAGTTTAGTTGTTTACAAATGACTAACTACTGTTGATGGGTGTTTTTTCTACCCAAATTGTCTCCGGATGATTCTCAATGTGACTTGTTAGAATGGAGTTCTTAAGAGAGATTATGAAACATTTGCCTCCACCTCTTAGTCACAATTGCACAATGCTTTTGGTTGGAATCCTTAGAGATATTATTGAACTTGTAGCTATTCATTGTTTTGGTTGTGACTTCTGAAGATATTGATCGGTAGATGGTGGTGATTGTATGATACCTTCGTAGTGAAACCTTATGTAGTTCATTAATTTTTGAATCTAACAACTTGTTACATCTACGTTAAAAGTGAATTTCTTTTCTTTGTAATCATTTTCAATTTTCTGCCAGAGCTAACTGGAAAGATACTTGAGAAGTTCATGATTTCAAATAGATTTGTCTGGTTGCATTATTTACCGGTTCCATGCATTGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGCAAACCTCTCCCTAGTAGACGCATTTTAAAATCCTCAAGGGGAATCCCGAAAGGGAAGGTCCAAAGAGAATAATATCTGCTAGCGGTGGGCTTGGGCTGTTATACTCATTCTCCTTGTTGCCCTCTTCCTCTTTTATTAGAATGCTTGGTTGAAGTAGAAGAATACGATACCGGAAAGAAACATATGGAGAAAAAAACAGGATGGGGTAAAAGTTGAATGAGGTCAATGATGTATTATCTTGTGTTTAAAATCACTTCTGAAAAGTGAAATGTGTTCCTATCTTGTAGCTCCTTCAAGAATTGAGTCGTTACTCTTATTAATGGATTTTTGTTTCTTGTGTTGCTTCCTAATAATGCAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTCTGGATGGTAACTTTAGCTCTATCGAGAAGTTAAGGCAATCCCCTCTTCCTCGAGTTGCTCGTTCTCACGTTAGTCAGGTAACATGAATGTTTGTCCTAAACTGTTTCGTTTTTTCATAGGTTCACTTTTGAAGTTAAAAGAATATGTTAAAAAGGAACTTAATGTCAGTGTTATTCCTTGGTCTACATTGCCGTAACTTATGGCCAAAAAGAGGCAGTCTAGATGGAGAAAATGACGAAGATGGTAAAGAGAGGGCATGGAAGAAAATTGGTGGTAGAAGAATGTAGTGGAGCTAAGAGAGGAAGGTGAATGAGTGTAAGCTTCGTGACCCGAACTTGATTGACTAGATGTGGGTTTTGGGACTTCAGCTTGGACGCGGGACTGTTTAAATGGCAAAGAACCCCTTAGTCGCCGAGTCTAGTTACTATCTTTTTCCAAGTACTTTCGAATGCAAGGTGCCATTTCTGTCTTCTTTGTTAGACTGGAGGCCCTTCATCTAGCATGCTCTCTTTTGTGGGCTTGTTCGTTTTTCTTTCATATATATTCTTTTCAATGAAAGTCAGTCTCTTATCGAAAAATAATAATAACTCATGGAATAAGAACTTGTAGAAGAGATTTTGTGACAGTCCAAGGCCACCACTAGCAAATATTGTCCATTTTCACCCATTATGTATCGCCATCAGCCTTACGATTTTAAAACGCATCTCTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGATTCGTTCCCCTCTCCAACCGATGTGAGATCTCACTGATTAAAACCCCCCACTAACGCAGTTTTCTGCATCAGCTCATTATGGGTCAATCATAATTGCATCTTACTACAAAACAAACAAAACATTTGCTTCTTATATAGAGTATCTTCTAATCTTGACATTGATGAATTTTAAAGGTTATGAGCGATGATGATGAAGAAGAAGATGAAGAAGATGAAGAAGAGGGTGGTGATGTTGTTGTTGAAAATGGAAGGAGGGATATGATGGTGGATGCCATACAACTCACGCCTGTCAATCAGCCCACTCCAGAGGCCACAGCTGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAGTAAGAACCCTACTTTTAATTATCTATCTCAACTTAATTCATTTACCCTTTTTCTTTGCACTGGGCACTAGCCATCAATTTTGTTTCGTCCCAAAATAGACAAAATGTTGGAATTCAGCTTGTGGGAGAGCTCACTGTGGGATGGTATGCCATTGCTTTCTTTAAGTATCATATTTATCCCCCATGCCTTCTGGTTACTCCATTATATACAATAGGTATGGTCGTAAGATGGAGTTTGCCTTTTGAACACCCGTACTAAACATATATATCTCAACTAGTTGAGCTATACTTAATTTGGTTTGTGATAGATATACACGAAGAACACCATATGATTAGAGGATGTTGATCCAAACATGGTTGAATGCCAACGTTTCTTGGTAAGTGAATTGTGGTAATACCTTTTGAACATCGTCTTTAAATATACATATCTTAACCAGTTGAGCTATACTTAATTTAGTCTGTGTGATGGAGAAACACGAAGTACACCTCATGATTAGAGGATGTTGATCCAAACGTGGTTGAATGCCAATGTTTCTTGGTAAGTGAATTGTGGTAATACTTTTTGAACACCTATCTCTAAAGATACGTATCTTAACTAGTTGAGCTATACTTAATTTGGTATGTTGTGATAGATATACACGAAGAACACCATATGATTAGAGGTTGTTGATCCAAACTTGTTGAATGCCAACGTTTCTTGGTAAGTGAATTGTGGTAATACCTTTTGAACACCCGTCTTCAAAGATACATATCTTAACCAGTTGAGCTATATTGAATTTAGTAAGTGATG

mRNA sequence

ATGTTTAAAATTCAATTTTCCCTTTTCTTCTCCAAGTAAACTGCATAGGGCCGAGCTCATATCTTCTCGGTTGTGAAGCCCTCTGAATCGCAATCGCAGCTCTCTTTCGATCGATCATCGCCCTCAATTTCATTCAGCGCTCTCAGCTGTTTCAAGGGTTCTACGTTTGGAGGCGGAGAGATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCCGACATTCTCACATGGTTTACTCAGAACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTCTGGATGGTAACTTTAGCTCTATCGAGAAGTTAAGGCAATCCCCTCTTCCTCGAGTTGCTCGTTCTCACGTTAGTCAGGTTATGAGCGATGATGATGAAGAAGAAGATGAAGAAGATGAAGAAGAGGGTGGTGATGTTGTTGTTGAAAATGGAAGGAGGGATATGATGGTGGATGCCATACAACTCACGCCTGTCAATCAGCCCACTCCAGAGGCCACAGCTGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAGTAAGAACCCTACTTTTAATTATCTATCTCAACTTAATTCATTTACCCTTTTTCTTTGCACTGGGCACTAGCCATCAATTTTGTTTCGTCCCAAAATAGACAAAATGTTGGAATTCAGCTTGTGGGAGAGCTCACTGTGGGATGGTATGCCATTGCTTTCTTTAAGTATCATATTTATCCCCCATGCCTTCTGGTTACTCCATTATATACAATAGGTATGGTCGTAAGATGGAGTTTGCCTTTTGAACACCCGTACTAAACATATATATCTCAACTAGTTGAGCTATACTTAATTTGGTTTGTGATAGATATACACGAAGAACACCATATGATTAGAGGATGTTGATCCAAACATGGTTGAATGCCAACGTTTCTTGGTAAGTGAATTGTGGTAATACCTTTTGAACATCGTCTTTAAATATACATATCTTAACCAGTTGAGCTATACTTAATTTAGTCTGTGTGATGGAGAAACACGAAGTACACCTCATGATTAGAGGATGTTGATCCAAACGTGGTTGAATGCCAATGTTTCTTGGTAAGTGAATTGTGGTAATACTTTTTGAACACCTATCTCTAAAGATACGTATCTTAACTAGTTGAGCTATACTTAATTTGGTATGTTGTGATAGATATACACGAAGAACACCATATGATTAGAGGTTGTTGATCCAAACTTGTTGAATGCCAACGTTTCTTGGTAAGTGAATTGTGGTAATACCTTTTGAACACCCGTCTTCAAAGATACATATCTTAACCAGTTGAGCTATATTGAATTTAGTAAGTGATG

Coding sequence (CDS)

ATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCCGACATTCTCACATGGTTTACTCAGAACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTCTGGATGGTAACTTTAGCTCTATCGAGAAGTTAAGGCAATCCCCTCTTCCTCGAGTTGCTCGTTCTCACGTTAGTCAGGTTATGAGCGATGATGATGAAGAAGAAGATGAAGAAGATGAAGAAGAGGGTGGTGATGTTGTTGTTGAAAATGGAAGGAGGGATATGATGGTGGATGCCATACAACTCACGCCTGTCAATCAGCCCACTCCAGAGGCCACAGCTGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAG

Protein sequence

MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAEDGWVQVTSRRSRGTRN
Homology
[Close]
BLAST of Carg02981 vs. NCBI nr
Match: KAG7024555.1 (Pre-rRNA-processing protein TSR2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387.9 bits (995), Expect = 5.3e-104
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE 180
           LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 199
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 198

[Close]
BLAST of Carg02981 vs. NCBI nr
Match: KAG6591676.1 (Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.9 bits (969), Expect = 5.5e-101
Identity = 193/194 (99.48%), Postives = 194/194 (100.00%), Query Frame = 0 

Query: 5   ENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKE 64
           +NRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKE
Sbjct: 156 KNRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKE 215

Query: 65  PLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPRV 124
           PLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPRV
Sbjct: 216 PLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPRV 275

Query: 125 ARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAEDG 184
           ARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAEDG
Sbjct: 276 ARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAEDG 335

Query: 185 WVQVTSRRSRGTRN 199
           WVQVTSRRSRGTRN
Sbjct: 336 WVQVTSRRSRGTRN 349

[Close]
BLAST of Carg02981 vs. NCBI nr
Match: XP_022936382.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 372.5 bits (955), Expect = 2.3e-99
Identity = 193/198 (97.47%), Postives = 193/198 (97.47%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE 180
           LPRVARSHVSQVMSDDDE   EEDEEEGGDVVV NGRRDMMVDAIQ TPVNQPTPEATAE
Sbjct: 121 LPRVARSHVSQVMSDDDE---EEDEEEGGDVVVGNGRRDMMVDAIQPTPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 199
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 195

[Close]
BLAST of Carg02981 vs. NCBI nr
Match: XP_023534881.1 (pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534882.1 pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucurbita pepo subsp. pepo] >XP_023534883.1 pre-rRNA-processing protein TSR2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97
Identity = 190/198 (95.96%), Postives = 191/198 (96.46%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE 180
           LP+VARSHVSQVMSDDDE   EEDEEEGGDVVV NGRRDMMVDA Q  PVNQPTPEATAE
Sbjct: 121 LPQVARSHVSQVMSDDDE---EEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 199
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 195

[Close]
BLAST of Carg02981 vs. NCBI nr
Match: XP_022975934.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 357.1 bits (915), Expect = 1.0e-94
Identity = 186/198 (93.94%), Postives = 188/198 (94.95%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           MEGGENRLLPA ALP FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE 180
           LP+VARSHVSQVMSDD    +EEDEEEGGDV V NGRRDMMVDAIQ  PVNQPTPEATAE
Sbjct: 121 LPKVARSHVSQVMSDD----EEEDEEEGGDVDVGNGRRDMMVDAIQPRPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 199
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 194

[Close]
BLAST of Carg02981 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 57/179 (31.84%), Postives = 88/179 (49.16%), Query Frame = 0 

Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMIL 75
           LF+E    VL  W  LQ+AVEN +GG  S+ K E +   I  +F+ N +    +  + I+
Sbjct: 11  LFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVEDSIM 70

Query: 76  DEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIE-KLRQSPLPRV-ARSHVSQVM 135
                  +T V+DGS   VA++L V+  +C  G  ++++ K+ Q    +   R+ V +V 
Sbjct: 71  GMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDVRAKVQEVT 130

Query: 136 SDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAEDGWVQVTSRR 193
             DDEEE  +DEEE  D     G       +  L P + P  E   E +DGW  V  ++
Sbjct: 131 PSDDEEESSDDEEEAMDCENTPGSSSAASLSGALGPSSAPKKEEEPE-DDGWTVVRRKK 188

[Close]
BLAST of Carg02981 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-11
Identity = 53/186 (28.49%), Postives = 95/186 (51.08%), Query Frame = 0 

Query: 9   LPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYI 68
           L +    +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +FT N + L  
Sbjct: 4   LSSSTREVFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQP 63

Query: 69  DDLEMILDEALLS-LNTQVDDGSIEEVAERLIVMHEECLDGNFSSI-EKLRQSPLPRVAR 128
           D++E  + E + +  +T VDDGS+ +VA+++  M ++C  G  + + E++ +    + + 
Sbjct: 64  DEVEDFISELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSS 123

Query: 129 SHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAEDGWV 188
                  +   +++D++DEEE  D   E G     V +   T VN    E   E +DGW 
Sbjct: 124 GRAKATPAQTPQDDDDDDEEEAMD--CEGGSAGASVSS---TAVNDLHHE--EEEDDGWT 181

Query: 189 QVTSRR 193
            V  ++
Sbjct: 184 VVRRKK 181

[Close]
BLAST of Carg02981 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 6.0e-10
Identity = 46/150 (30.67%), Postives = 76/150 (50.67%), Query Frame = 0 

Query: 17  FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMILD 76
           F+ G+ +V+ +W AL +AVEN WGG DS  K + +   ++  F   K    + D  +I +
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEK----VVDAALIEE 91

Query: 77  EALLSL----NTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLR---QSPLPRVARSHV 136
             L ++     T V+D S   +A  +I ++ +C + N++ +EKL    Q          V
Sbjct: 92  TLLYAMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRV 151

Query: 137 SQVMSDDDEEE------DEEDEEEGGDVVV 154
             +  DDDE++      D+EDE+E  D VV
Sbjct: 152 VHIEGDDDEDDEDVEDYDDEDEDEEMDEVV 177

[Close]
BLAST of Carg02981 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.7e-09
Identity = 50/185 (27.03%), Postives = 92/185 (49.73%), Query Frame = 0 

Query: 13  ALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLE 72
           A  LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   +  +F +N + L +D++E
Sbjct: 8   ARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEVE 67

Query: 73  MILDEALLS-LNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPRVARSHVSQ 132
             L E L +  +T V+DGS+ +V+++L  M      G+ +++ ++      R  +   + 
Sbjct: 68  DFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTATA 127

Query: 133 VMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTP-VNQPTPEATAE---AEDGWVQ 192
           + +  + +EDE+D +   ++ V         D +   P  + P  +   E    EDGW  
Sbjct: 128 LKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIVEDGWTI 187

[Close]
BLAST of Carg02981 vs. ExPASy Swiss-Prot
Match: Q8C8T8 (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-07
Identity = 49/182 (26.92%), Postives = 87/182 (47.80%), Query Frame = 0 

Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMIL 75
           LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F  N + L ++++E  L
Sbjct: 11  LFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD-LELEEIEDFL 70

Query: 76  DEALLS-LNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPRVARSHVSQVMS 135
            E + +  +T V+DGS+ +V+++L  M      G+ ++++++      +  +   + +M+
Sbjct: 71  GELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKKCKVTATPLMT 130

Query: 136 --DDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE--AEDGWVQVTS 193
             + D  ED+ D  E  +V   N          Q  P +  T     E   EDGW  V  
Sbjct: 131 AKETDVAEDDVDSVEEMEVTATNDGATTDEVCPQPQPSDPDTQTIKEEDIVEDGWTIVRR 190

[Close]
BLAST of Carg02981 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 193/198 (97.47%), Postives = 193/198 (97.47%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE 180
           LPRVARSHVSQVMSDDDE   EEDEEEGGDVVV NGRRDMMVDAIQ TPVNQPTPEATAE
Sbjct: 121 LPRVARSHVSQVMSDDDE---EEDEEEGGDVVVGNGRRDMMVDAIQPTPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 199
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 195

[Close]
BLAST of Carg02981 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.9e-95
Identity = 186/198 (93.94%), Postives = 188/198 (94.95%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           MEGGENRLLPA ALP FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE 180
           LP+VARSHVSQVMSDD    +EEDEEEGGDV V NGRRDMMVDAIQ  PVNQPTPEATAE
Sbjct: 121 LPKVARSHVSQVMSDD----EEEDEEEGGDVDVGNGRRDMMVDAIQPRPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 199
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 194

[Close]
BLAST of Carg02981 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.1e-78
Identity = 165/206 (80.10%), Postives = 178/206 (86.41%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKE LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSI +LRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENG----RRDMMVDAIQLTP--VN-QP 180
           LPR A SHVSQ MSD++EEE+E+D+++ GD  V NG    R DMMVDAIQ  P  VN QP
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGD--VGNGSDGMRNDMMVDAIQQQPRAVNQQP 180

Query: 181 TPEATAEAEDGWVQVTSRR-SRGTRN 199
            PEA+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 RPEASAPAEDGWVQVTSRRSSRGTRN 204

[Close]
BLAST of Carg02981 vs. ExPASy TrEMBL
Match: A0A6J1FPH6 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446075 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 161/204 (78.92%), Postives = 176/204 (86.27%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           M+G  NRLLPA A PLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKE LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSIE+LRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQL----TPVNQP-TP 180
           LPR A SHVSQ MSDD+EEE+E+D+++GG+   +  R DMMVDAIQ       VNQP  P
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGN-GGDGMRNDMMVDAIQQQQQPRAVNQPRRP 180

Query: 181 EATAEAEDGWVQVTSRR-SRGTRN 199
           EA+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 EASAPAEDGWVQVTSRRSSRGTRN 203

[Close]
BLAST of Carg02981 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.3e-75
Identity = 155/202 (76.73%), Postives = 168/202 (83.17%), Query Frame = 0 

Query: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120
           QNKE LYIDDLE ILDEA+LSLNTQVDDGSIEEVAERLI MHEEC+D NFSSIE+LRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAI---QLTPVN-QPTPE 180
            P+VA +HV+Q  SDDD+++D E++           R DMMVDA+   Q  PVN Q  PE
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDV---------NRNDMMVDAVQPAQSRPVNHQLNPE 180

Query: 181 ATAEAEDGWVQVTSRRSRGTRN 199
           ATAEAEDGWVQVTSRR+RGTRN
Sbjct: 181 ATAEAEDGWVQVTSRRNRGTRN 193

[Close]
BLAST of Carg02981 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-30
Identity = 74/195 (37.95%), Postives = 121/195 (62.05%), Query Frame = 0 

Query: 5   ENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKE 64
           +N  L   A  + +EGIGL+L RW+A++ AVEN WGGRDS+ K     + +  +F Q+K+
Sbjct: 3   QNATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKD 62

Query: 65  PLY-IDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPR 124
           P+  I+ L  +LD+ L  LNT  +DGS++EVA  L+ ++E+C +GN+  +E+LR +    
Sbjct: 63  PVKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQT 122

Query: 125 VARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAED 184
            A   V +V + DDEE D+ED+++  D++V+   +       +  PV++P       A+D
Sbjct: 123 SA--SVVKVSNGDDEESDDEDDDQTTDMMVDASNQKQ-----EAMPVDEPV------ADD 182

Query: 185 GWVQVTSRRSRGTRN 199
           GW  V+SR+++G RN
Sbjct: 183 GWTVVSSRKNKGKRN 184

[Close]
BLAST of Carg02981 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-17
Identity = 43/94 (45.74%), Postives = 68/94 (72.34%), Query Frame = 0 

Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMIL 75
           + Q  IG +LSRW  LQ+AV+N+WGG DS +K + L  ++    +Q+   + ++++E +L
Sbjct: 30  VLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVEEIENLL 89

Query: 76  DEA-LLSLNTQVDDGSIEEVAERLIVMHEECLDG 109
            E+ LLS NT+++DGSIEEVAE+L+++HEE L G
Sbjct: 90  HESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

The following BLAST results are available for this feature:
BLAST of Carg02981 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024555.15.3e-104100.00Pre-rRNA-processing protein TSR2-like protein [Cucurbita argyrosperma subsp. arg... [more]
KAG6591676.15.5e-10199.48Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma s... [more]
XP_022936382.12.3e-9997.47pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata][more]
XP_023534881.11.3e-9795.96pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo]... [more]
XP_022975934.11.0e-9493.94pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima][more]
BLAST of Carg02981 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3KPN21.3e-1231.84Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ... [more]
Q3KRG33.2e-1128.49Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=... [more]
Q066726.0e-1030.67Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508... [more]
Q969E86.7e-0927.03Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV... [more]
Q8C8T83.7e-0726.92Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 S... [more]
BLAST of Carg02981 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F8A71.1e-9997.47pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1IM144.9e-9593.94pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1J4001.1e-7880.10pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1FPH62.0e-7778.92pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A5D3E5987.3e-7576.73Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
BLAST of Carg02981 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27990.13.2e-3037.95Pre-rRNA-processing protein TSR2, conserved region [more]
AT3G22510.12.4e-1745.74Pre-rRNA-processing protein TSR2, conserved region [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 17..96
e-value: 1.2E-21
score: 77.0
IPR019398Pre-rRNA-processing protein TSR2PANTHERPTHR21250UNCHARACTERIZEDcoord: 14..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..156
NoneNo IPR availablePANTHERPTHR21250:SF4PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEINcoord: 14..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02981-RACarg02981-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0005634 nucleus