Carg02975 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02975
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein 38-like
Location	Carg_Chr09: 2750337 .. 2753411 (+)
RNA-Seq Expression	Carg02975
Synteny	Carg02975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTCGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCCAAAGGATACGGCTTTGTAAGTTAGCCTCGTAATTATTTAAGTTTTTGAGTTTCGTGGTGATTTATATCATTATTCAGGTAACGTTTCGAGACGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCCGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGTCGGTATTATAGTTTTATCTCTATCGTTTTTACCACGATGGTTGTTTATTCAAATTTTTGTTTTGGTATTCAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCGCCCCCTGTCGTTTATTCACCATACGGGTCAGTCAAGTTATTATCGAATTAGAAAGTTGGGTAGAAATCATGAAGGTTAAATTGAAATCAACGATTAAACTAAATCAAATATGCCATTATTGAACCCTGAAACAAAAGATTAAACGGGTTTAGAAATTGGGTTTGAACGGAAACATATGGACCCACTGTTTACTTGTCTAAAGTGTCAACCTCCACATATCTGTATAATAATATGATATTGTTCACTTTAAACAAAAACGCTCACTCAATTATGAGTTATGCATCGCTCGATTTTCTACGTGGGTCTAGATTGATCAGCCGTTTCATTTGCAAAGAAAGAAACGGCAGTTACAATGGGTCAAAACCATGTCTGTGAGATCCCACAACGAAACAAATCTGTTACTAGCCGACGTGTTTTAAAAACCTTTTTAAAGGGTATTAAAACATCTGGTAGCGGTGGGTTTAGGCCGTTATAGTGGAGCCAGCGAGCTCCGCCCCACCGACCAATCGACAAACGCAAAACCAATACAACTGTAACACCAATCAATGTGTTTACAACTGTCCCAAAAACAAAACTGAGTCCCATTTGAGCTAAGGTTCTTCATAAAAAGAATAGAAATTGTGGAACAATATTTTCCACTAAGCAATTAATTCAAATCCCAACCCACTTGGTTCTTTTTCTTGGCTTTGCAGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCATCAAAAGTCACCATAAACCCTAACTAACTTATAAAAAGCATTGAATTTTAGCAACCAGTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCACAGTCGCATCAGCCCCGTGTAGCGGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCTGATACGACATCGTTTTGCCTCCACAGGTACGAATTTCTACCTCTTTTTATAATTTTTGGAATTATATATGAACAATAAAAAAGACATCTGACAGGAACAGACAAACAGATAAATAGATTGTTATTATTATTATTATTATTATTATTAATATAAGGTAAAAAAAAATAAAAATAAAAATAAAAATGGGGGCCATGTGGGTAAAGAGCTAAAGCCATGTGAGTGAGCTGTCTGGGCCAATGCAATTGTTGAAAGGAAATTGATGACAGAGTAGCATTTCATTATATAGACAGCTACTGCATTCCCCATGTGTGGTTCAGTTTCCAACCTATTACTATTATCAACCCCTTTCTCCCGGTATCCCCGTTTCGATGTGATTGATAGTTTTGTATTTAGATGATTCTTAGAGGTCACCCGACACGACCCCTCTTAGCCAATGTTCGAATTGGCTGATGATAAACTTACACGAGATCTATGTCATGAATGTAAGCGTAAGATTTCGCTGAAACACTCTCCCTAGTAGATGTATTTTAAAAACCGTGAGACTGACGGTGATATGTAACGAGTCAAAACGGACGATATTTGCTAATGGTAGGCTTGGACTGTTACAAATGGTATTAGGGTCAGACACTGAACGCTGACCCCTAAGAAGGTGGATTGTGAGATCTCCTATCAGTTGACGACTATACATTCAAGCCAAAATGAACAATATTGGCTAACAATGAGATATAGCTATTACAGTAAGGTTCGGTAAAAATAAAAATTTATTATTGATTTCCATTTCGGTAGCTGTGTCCAGTTGTCTTTCAAAATGGACCACTTCCAAATTCAAGTTTCCAACCTTTTTCTTTTTGGGTCTCGTTTAGAGATACACGAGTTGGATTGTAAAAAATTTTAAGAATCTCATTTAGAAGCGTATACGGGTTTATAGTTGGAATTTTTCCGACTAACCCGATATTTGAGATTGGTTGGTCAGCTGGTCTCGACCTGACATAGTTCACAACCCAATAAAAAACACCCAACTTTCTATTTTAGTTGGTCGGGTTGATCTGACCAAAAAAAATTTTGACCCACGAACTAAACCTACAAAAACGTTACCTAACCCTCAATTTTTATAGTTTTAGTTGAGTAGTTCAAGTTGTTCGAGTTTTACCGTTAATAAATTACAATAATTAAATTTTGTTAATATTAATTTGTATTAATGATGGGTTTCAGATTCACAGACATCTCAGCAAACTCCTCCAGAAGCTGAAGCTGAAGCTGTTACCTCGGAAACTTCAACCACCTGAGAGAACGAATTCACAAAAACCAAACCAAACCAAACCGAACCGAACCGAATTATTGGTTCAATTTCTCATGAAAAAAAAAACCCCAAAAAAAAGGTGGAGATAGAAAATTGTATAAAGTTGACTACTTGATCGATTTGACCGTCTTTTTCACCCATTTTTCCACTTTTTT

mRNA sequence

ATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTCGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCCAAAGGATACGGCTTTGTAACGTTTCGAGACGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCCGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCGCCCCCTGTCGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAACAACCAGTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCACAGTCGCATCAGCCCCGTGTAGCGGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCTGATACGACATCGTTTTGCCTCCACAGATTCACAGACATCTCAGCAAACTCCTCCAGAAGCTGAAGCTGAAGCTGTTACCTCGGAAACTTCAACCACCTGAGAGAACGAATTCACAAAAACCAAACCAAACCAAACCGAACCGAACCGAATTATTGGTTCAATTTCTCATGAAAAAAAAAACCCCAAAAAAAAGGTGGAGATAGAAAATTGTATAAAGTTGACTACTTGATCGATTTGACCGTCTTTTTCACCCATTTTTCCACTTTTTT

Coding sequence (CDS)

ATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTCGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCCAAAGGATACGGCTTTGTAACGTTTCGAGACGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCCGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCGCCCCCTGTCGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAACAACCAGTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCACAGTCGCATCAGCCCCGTGTAGCGGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCTGATACGACATCGTTTTGCCTCCACAGATTCACAGACATCTCAGCAAACTCCTCCAGAAGCTGAAGCTGAAGCTGTTACCTCGGAAACTTCAACCACCTGA

Protein sequence

MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSYPPPLIRHRFASTDSQTSQQTPPEAEAEAVTSETSTT

Homology

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BLAST of Carg02975 vs. NCBI nr
Match: KAG7024550.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 522.3 bits (1344), Expect = 2.4e-144
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180
           PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSYPPPLIRHRFASTDSQ 240
           QSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSYPPPLIRHRFASTDSQ
Sbjct: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSYPPPLIRHRFASTDSQ 240

Query: 241 TSQQTPPEAEAEAVTSETSTT 262
           TSQQTPPEAEAEAVTSETSTT
Sbjct: 241 TSQQTPPEAEAEAVTSETSTT 261

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BLAST of Carg02975 vs. NCBI nr
Match: KAG6591668.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 516.5 bits (1329), Expect = 1.3e-142
Identity = 260/261 (99.62%), Postives = 260/261 (99.62%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180
           PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSYPPPLIRHRFASTDSQ 240
           QSPRGAFPSPSQSHQPRVAVPPYVYYPPP AAAAAAAQFEGSFSYPPPLIRHRFASTDSQ
Sbjct: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPP-AAAAAAAQFEGSFSYPPPLIRHRFASTDSQ 240

Query: 241 TSQQTPPEAEAEAVTSETSTT 262
           TSQQTPPEAEAEAVTSETSTT
Sbjct: 241 TSQQTPPEAEAEAVTSETSTT 260

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BLAST of Carg02975 vs. NCBI nr
Match: XP_022936617.1 (RNA-binding protein 38-like [Cucurbita moschata])

HSP 1 Score: 508.8 bits (1309), Expect = 2.7e-140
Identity = 259/262 (98.85%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180
           PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYT DYGYHHQHYQHHQQPVYNPYFYGYSL
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTTDYGYHHQHYQHHQQPVYNPYFYGYSL 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSY-PPPLIRHRFASTDS 240
           QSPRGAFPSPSQSHQPRVAVPPYVYYPPP AAAAAAAQFEGSFSY PPPLIRHRFASTDS
Sbjct: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPP-AAAAAAAQFEGSFSYPPPPLIRHRFASTDS 240

Query: 241 QTSQQTPPEAEAEAVTSETSTT 262
           QTSQQTPPEAEAEAVTSETSTT
Sbjct: 241 QTSQQTPPEAEAEAVTSETSTT 261

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BLAST of Carg02975 vs. NCBI nr
Match: XP_023535016.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 490.0 bits (1260), Expect = 1.3e-134
Identity = 254/265 (95.85%), Postives = 256/265 (96.60%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180
           PSYSGVPPPLNQPPL PP PPVVYSPYGYPTYTPDYGYHHQHYQHHQQP+YNPYFYGYSL
Sbjct: 121 PSYSGVPPPLNQPPL-PPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPLYNPYFYGYSL 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPP--AAAAAAAAQFEGSFSY--PPPLIRHRFAS 240
           QSPRGAFPSPSQSHQPRV VPPYVYYPPP  AAAAAAAAQFEGSFSY  PPPLIRHRFAS
Sbjct: 181 QSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAAAAAAAAAQFEGSFSYPPPPPLIRHRFAS 240

Query: 241 TDSQTSQQTPPEAEAEAVTSETSTT 262
           TDSQTSQQTPP  EAEAVTSETSTT
Sbjct: 241 TDSQTSQQTPP--EAEAVTSETSTT 262

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BLAST of Carg02975 vs. NCBI nr
Match: XP_022975652.1 (RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding protein 38-like [Cucurbita maxima])

HSP 1 Score: 482.6 bits (1241), Expect = 2.1e-132
Identity = 250/264 (94.70%), Postives = 252/264 (95.45%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180
           PSYSGVPPPLNQPPL PPPPPVVYSPYGYPTYTPDYGY HQHYQHHQQPVYNPYFYGYS+
Sbjct: 121 PSYSGVPPPLNQPPL-PPPPPVVYSPYGYPTYTPDYGY-HQHYQHHQQPVYNPYFYGYSV 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSY---PPPLIRHRFAST 240
           QSPRGAFP PSQSHQPRVAVPPYVYYPPP    AAAAQ+EGSFSY   PPPLIRHRFAST
Sbjct: 181 QSPRGAFPIPSQSHQPRVAVPPYVYYPPP----AAAAQYEGSFSYPPPPPPLIRHRFAST 240

Query: 241 DSQTSQQTPPEAEAEAVTSETSTT 262
           DSQTSQQTP EAEAEAVTSETSTT
Sbjct: 241 DSQTSQQTPTEAEAEAVTSETSTT 258

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BLAST of Carg02975 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.8e-25
Identity = 82/190 (43.16%), Postives = 111/190 (58.42%), Query Frame = 0


Query: 10  FGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAES 69
           FGDT  TKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+DA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 70  ARRACANPNPMIDGRRANCNIAAM-GRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPP 129
           A RAC +  P+I+GRRANCN+A++ GR R SP     Q G  P  G+  +A P + G   
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQG--PKNGN--RATPPHVG--- 130

Query: 130 PLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSLQSPRGAFP 189
                          +S + YP+     G+ +Q  QH QQ      FYGY       A+ 
Sbjct: 131 --------------NHSQWYYPS-----GFTNQ--QHQQQNHQAVPFYGYP-----SAYV 167

Query: 190 SPSQSHQPRV 199
           +P+ +   +V
Sbjct: 191 APNMTFNQKV 167

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BLAST of Carg02975 vs. ExPASy Swiss-Prot
Match: Q7T3I7 (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-22
Identity = 85/207 (41.06%), Postives = 110/207 (53.14%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTTFTK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T+KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQ----AAPSYSGVP 131
           RAC +PNP+IDGR+AN N+A +G  +P   +     GV     + +Q      P Y   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYI-YP 126

Query: 132 PPLNQPPLP-PPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSLQSPRGA 191
           P + QP +  P P P + SPY       DY    Q Y H+    Y  Y Y  S  +    
Sbjct: 127 PTIVQPSMVIPTPIPSLQSPY------IDYNAATQAYTHYTTAAYEQYPYAASPATGYMG 186

Query: 192 FPSPSQSHQP---RVAVPP--YVYYPP 209
           +   S   QP       PP  Y+ Y P
Sbjct: 187 YGYTSPVQQPLSTTTGAPPTAYIQYQP 205

[Close]

BLAST of Carg02975 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.1e-22
Identity = 83/209 (39.71%), Postives = 115/209 (55.02%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTTFTK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQ----AAPSYSGVP 131
           RAC +PNP+IDGR+AN N+A +G  +P   +     GV     + +Q      P Y   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYI-YP 126

Query: 132 PPLNQPPLP-PPPPPVVYSPY-GYPTYTPDYGYH----HQHYQHHQQPVYNPYFYGY--S 191
           P + QP +  P P P + SPY  Y   T  + ++    ++ Y +   P      YGY  +
Sbjct: 127 PAIVQPSVVIPTPIPSLQSPYIDYNAATQAFTHYTTAAYEQYPYAASPATGYMGYGYTSA 186

Query: 192 LQSPRGAFPSPSQSHQPRVAVPPYVYYPP 209
           +Q P  A  + + +  P  A   Y+ Y P
Sbjct: 187 VQQPLSATTTTATTGAPPTA---YIQYQP 210

[Close]

BLAST of Carg02975 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-21
Identity = 86/212 (40.57%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTTFTK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 72  RACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQG---GVNPYQGSTMQ----AAPSYS 131
           RAC +PNP+IDGR+AN N+A +G    + PR    G   GV     + +Q      P Y 
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYI 149

Query: 132 GVPPPLNQPP--LPPPPPPVVYSPY-GYPTYTPDYGYH----HQHYQHHQQPVYNPYFYG 191
             PP + QP   +P  P P + SPY  Y   +P Y  +    +  Y +   P     F G
Sbjct: 150 -YPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQYPPATYDQYPYAASPATAASFVG 209

Query: 192 YSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPP 210
           YS  +   A P    +  P  A   +V Y  P
Sbjct: 210 YSYPA---AVPQALSAAAP--AGTTFVQYQAP 231

[Close]

BLAST of Carg02975 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-21
Identity = 78/217 (35.94%), Postives = 101/217 (46.54%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R+YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPPPL 131
           RAC +PNP+IDGR+AN N+A +G +PR   P            G T              
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRVMQP------------GFTF------------- 126

Query: 132 NQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSLQSPRGAFPSP 191
               +P   P  +  PYG PT+                     Y Y  +   P    P  
Sbjct: 127 ---GVPQIHPAFIQRPYGIPTH---------------------YVYPQAFMQPSVVIPHI 174

Query: 192 SQSHQPRVAVPPYVYYP-------PPAAAAAAAAQFE 221
             +     A  PY+ Y          AA AAAAA +E
Sbjct: 187 QPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYE 174

[Close]

BLAST of Carg02975 vs. ExPASy TrEMBL
Match: A0A6J1F8X9 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.3e-140
Identity = 259/262 (98.85%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180
           PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYT DYGYHHQHYQHHQQPVYNPYFYGYSL
Sbjct: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTTDYGYHHQHYQHHQQPVYNPYFYGYSL 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSY-PPPLIRHRFASTDS 240
           QSPRGAFPSPSQSHQPRVAVPPYVYYPPP AAAAAAAQFEGSFSY PPPLIRHRFASTDS
Sbjct: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPP-AAAAAAAQFEGSFSYPPPPLIRHRFASTDS 240

Query: 241 QTSQQTPPEAEAEAVTSETSTT 262
           QTSQQTPPEAEAEAVTSETSTT
Sbjct: 241 QTSQQTPPEAEAEAVTSETSTT 261

[Close]

BLAST of Carg02975 vs. ExPASy TrEMBL
Match: A0A6J1IJV9 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.0e-132
Identity = 250/264 (94.70%), Postives = 252/264 (95.45%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSL 180
           PSYSGVPPPLNQPPL PPPPPVVYSPYGYPTYTPDYGY HQHYQHHQQPVYNPYFYGYS+
Sbjct: 121 PSYSGVPPPLNQPPL-PPPPPVVYSPYGYPTYTPDYGY-HQHYQHHQQPVYNPYFYGYSV 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSY---PPPLIRHRFAST 240
           QSPRGAFP PSQSHQPRVAVPPYVYYPPP    AAAAQ+EGSFSY   PPPLIRHRFAST
Sbjct: 181 QSPRGAFPIPSQSHQPRVAVPPYVYYPPP----AAAAQYEGSFSYPPPPPPLIRHRFAST 240

Query: 241 DSQTSQQTPPEAEAEAVTSETSTT 262
           DSQTSQQTP EAEAEAVTSETSTT
Sbjct: 241 DSQTSQQTPTEAEAEAVTSETSTT 258

[Close]

BLAST of Carg02975 vs. ExPASy TrEMBL
Match: A0A6J1DIJ5 (RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.1e-101
Identity = 212/280 (75.71%), Postives = 231/280 (82.50%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGR QGG+NPYQGSTMQA 
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120

Query: 121 PSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTPDYGYHHQ--HYQHHQQPVY---N 180
           PSYSGVP PLNQPPL   PPPPPPVVYSPYGYP+Y+PDYGYH Q  +    QQP Y   +
Sbjct: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180

Query: 181 PYFYGYSLQSPRGAFP-SPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSY----PP 240
           PY YGYS+QSPR  F  +P QSH  RV  P Y+YY  PAAA +  AQFE S S+    PP
Sbjct: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVP-PSYLYY--PAAAPSPHAQFEPSSSFSNYPPP 240

Query: 241 PLIRHRFASTDSQTSQQTPPEAEAE------AVTSETSTT 262
           PL+RHRF+STDSQTSQQTP EAEAE      AVTSE+ +T
Sbjct: 241 PLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 277

[Close]

BLAST of Carg02975 vs. ExPASy TrEMBL
Match: A0A0A0LGV2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 3.1e-97
Identity = 204/274 (74.45%), Postives = 218/274 (79.56%), Query Frame = 0


Query: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVPPPLNQPPLPPPP---PPVVYSPYGYPTYTPDYGYHHQH-------YQHHQQPV 182
           PSY GVP PLNQPP+PPPP   PPVVYSPYGYP Y+PDYGYHH H        Q  Q   
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 183 YNPYFYGYSLQSPRGAFPSPSQSHQ-PRVAVPP-YVYYPPPAAAAAAAAQFE-GSFSYP- 242
             PY+YGYS  S    FP+PSQSHQ PR+ +PP YVYYPPP        QFE  SF+YP 
Sbjct: 184 QTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPP----PPPPQFEPSSFNYPP 243

Query: 243 ---PPLIRHRFASTDSQTSQQTPPEAEAEAVTSE 258
              P +IRHRF+STDSQTSQQTP EAEA  VTS+
Sbjct: 244 QPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 271

[Close]

BLAST of Carg02975 vs. ExPASy TrEMBL
Match: A0A6P5ZKC3 (RNA-binding protein 24-like OS=Durio zibethinus OX=66656 GN=LOC111301506 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.5e-83
Identity = 185/279 (66.31%), Postives = 205/279 (73.48%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRS FGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEAVII DKNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIICDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRACA+PNP+IDGRRANCNIA++GRPRPSPPRGR QG  +PYQG   Q A
Sbjct: 61  FVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRNQGS-SPYQGVAQQGA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHH-QQPVY-------- 180
           PSYSGV  P+  PP PPP PPV+Y PYGYPTY+P+YGYH   Y    QQP Y        
Sbjct: 121 PSYSGVAAPVPPPPPPPPLPPVIYPPYGYPTYSPEYGYHQALYNPQIQQPQYYQLYGSSS 180

Query: 181 ----NPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFS-YP 240
               +PY+YGYSLQ+PR  F SP Q+   R+  P Y YYP         +Q EGSFS YP
Sbjct: 181 TTMGSPYYYGYSLQAPRATF-SPPQAQ--RIPGPSYFYYP---------SQMEGSFSTYP 240

Query: 241 PP---LIRHRF-ASTDSQTSQQTPPEAEAEAVTSETSTT 262
            P   L RH F +STDSQT QQT  E EA A+TSE+  T
Sbjct: 241 APPFHLTRHPFPSSTDSQTPQQTSTETEAGAITSESPKT 266

[Close]

BLAST of Carg02975 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 218.4 bits (555), Expect = 6.8e-57
Identity = 144/293 (49.15%), Postives = 177/293 (60.41%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT+TKVFVGGLAWETPTDEMRRYFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQ-GGVNPYQGSTMQAAPSY 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ G  + YQ        +Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 125 SGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPD-YGYHH----------QHYQHHQQ---- 184
           +G+  PL     P   P ++Y  YGY TY PD +GYH           Q+YQ  QQ    
Sbjct: 126 TGMAAPLP----PAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGG 185

Query: 185 -----------PVYNPYFYGYSLQSPRGAFP---------SPSQSHQPRVAVPPYVYYPP 244
                       + +PY+YGYSLQ+PR  +          +P Q H  R + P ++ YP 
Sbjct: 186 GATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYP- 245

Query: 245 PAAAAAAAAQFEGSFSYPPPLIRHRFASTDSQTSQQTPPEAEAEAVTSETSTT 262
                        + S+ PPL     +ST+S+   Q  P AE EA T+    T
Sbjct: 246 ------------SNSSFAPPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEIT 277

[Close]

BLAST of Carg02975 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-54
Identity = 130/245 (53.06%), Postives = 159/245 (64.90%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT+TKVFVGGLAWETPTDEMRRYFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQ-GGVNPYQGSTMQAAPSY 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ G  + YQ        +Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 125 SGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPD-YGYHH----------QHYQHHQQ---- 184
           +G+  PL     P   P ++Y  YGY TY PD +GYH           Q+YQ  QQ    
Sbjct: 126 TGMAAPLP----PAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGG 185

Query: 185 -----------PVYNPYFYGYSLQSPRGAFP---------SPSQSHQPRVAVPPYVYYPP 214
                       + +PY+YGYSLQ+PR  +          +P Q H  R + P ++ YP 
Sbjct: 186 GATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYPS 242

[Close]

BLAST of Carg02975 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-49
Identity = 120/209 (57.42%), Postives = 139/209 (66.51%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT TKVFVGGLAWETPTDEMRRYF+QFG+ILEAVIITDK T KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGG-VNPYQGSTMQAAPSY 124
           RD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQGG  + YQG       SY
Sbjct: 66  RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG---GQSSY 125

Query: 125 SGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHY--QHHQQPVYNPYFYGYSLQ 184
           +G+  P+ Q         ++Y  YGY TY  +YGYH   Y  Q  Q   Y    YG    
Sbjct: 126 TGMAAPVQQ----AAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYG---- 185

Query: 185 SPRGAFPSPSQSHQPRVAVPPYVYYPPPA 211
              G   SPS S+   +   PY Y   P+
Sbjct: 186 --GGGATSPSSSN---IMPSPYYYLQAPS 197

[Close]

BLAST of Carg02975 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.6 bits (392), Expect = 5.4e-38
Identity = 102/196 (52.04%), Postives = 123/196 (62.76%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET ++ +R++FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPP-------RGRGQGGVNPYQGST 124
           FRD E+ARRACA+P P+IDGRRANCN+A++GRPRP  P        GR +   +PY G+ 
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLR-PASPYIGNV 131

Query: 125 MQAAPSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFY 184
                S  G  P   Q PLP      V  PYG   Y P+Y Y         Q +Y+PY  
Sbjct: 132 QGPRGSLIGNYP--YQQPLPYNYQQGVVYPYGVTAYGPEYMY------SQSQGLYSPYMG 191

Query: 185 GYSLQ--SPRGAFPSP 191
              LQ     GA  SP
Sbjct: 192 QQYLQVYGVPGAVNSP 198

[Close]

BLAST of Carg02975 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 110/268 (41.04%), Postives = 140/268 (52.24%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DT  TK+FVGGLAWET  D MRRYFEQFG+I+EAV+ITDKNT +SKGYGFVTF++AE+A 
Sbjct: 18  DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77

Query: 72  RACANPNPMIDGRRANCNIAAMGRPRPSPPR------------GRGQGGVNP---YQGST 131
           RAC N NP+IDGRRANCN+A +G  +P PP             G G G V P   ++GS+
Sbjct: 78  RACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVGLVAPSPQFRGSS 137

Query: 132 MQAAPSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFY 191
             +A  +        Q P P       YS YG+  Y+ +  Y   +Y HH         Y
Sbjct: 138 SSSAFVHQQQQQHTAQFPFP-------YSTYGFSGYSQEGMYPMNYYNHH--------LY 197

Query: 192 GYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEG------SFSY----P 248
           G    SP    PS   +       P Y  Y    ++  A AQ +       SF Y     
Sbjct: 198 GGQQFSPYMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAPPA 257

The following BLAST results are available for this feature:

BLAST of Carg02975 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024550.1	2.4e-144	100.00	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591668.1	1.3e-142	99.62	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936617.1	2.7e-140	98.85	RNA-binding protein 38-like [Cucurbita moschata]	[more]
XP_023535016.1	1.3e-134	95.85	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_022975652.1	2.1e-132	94.70	RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding prote...	[more]

BLAST of Carg02975 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	8.8e-25	43.16	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q7T3I7	1.1e-22	41.06	RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2	[more]
Q6DIV4	9.1e-22	39.71	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1	[more]
Q9H0Z9	2.6e-21	40.57	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q76LC6	4.5e-21	35.94	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]

BLAST of Carg02975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8X9	1.3e-140	98.85	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 S...	[more]
A0A6J1IJV9	1.0e-132	94.70	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=...	[more]
A0A6J1DIJ5	2.1e-101	75.71	RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1	[more]
A0A0A0LGV2	3.1e-97	74.45	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV...	[more]
A0A6P5ZKC3	1.5e-83	66.31	RNA-binding protein 24-like OS=Durio zibethinus OX=66656 GN=LOC111301506 PE=4 SV...	[more]

BLAST of Carg02975 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	6.8e-57	49.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	1.1e-54	53.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	1.1e-49	57.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	5.4e-38	52.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46780.1	1.1e-35	41.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 1.6E-24 score: 97.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..76 e-value: 5.6E-17 score: 61.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..93 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..110 e-value: 3.3E-26 score: 93.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..142
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..249
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 9.24324E-45 score: 143.525
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..249
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02975-RA	Carg02975-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding