Carg02881 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02881
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 2214212 .. 2217005 (+)
RNA-Seq ExpressionCarg02881
SyntenyCarg02881
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGTGGCTCTACGCTGCCATTCCGGCGTCTTTTTCGCTTCATTATTTTTCACTCACTGAACCACTGTTTTCAGCTTGCTTTTAAACTCCAGCGATTGAAGAATGTTGTTTTTGCTTATTCGAGGCCGTTAACGACCGATCGGATTCTTATCGTGCAGGTAAGTTTGAAAGCTTAGGGTGTTTTTTGTTTCTCCTTATAAACTGTTCTCAGTTTTTTTTTCTTAATATGCGATTGCTTAGTGCTAGTTTGTAGCCAATGATTCATGGATTCGAACGAGAACAATGATATATGATGATTTTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTGTTCGTTGAATCTTAAGCTTGGGAGGTACTATATCGTGATTGAAGTAGTGAGTTTGAGAGAGCTGTATCGACATAGAACAGTAGACTAGTAGGAGGATTTTGACATATAGAATAGTAGGATGATTTTGATGCGTTGTGCCCTCTAGTGAAGGAGAGTTTTCAGTTGTATTCGGATATTTATGAAGTCTTGGCTCTTTTGCATGATAAGTTCTTTGGTATGGAGCATCCTGACTGTGTCAAGGCATTTGATGCGTATGATATTGCAGGGAAGCCGATTGATGAGCTCTCTGTGTTTTATAATTGGTGTAAAGATGTAGGTGTTGTAAGGTCTTCTGAGTATCTAGAGGTTCGGAGAATTGACTGCAAGGTATCGGAGACATTGGATACGTTTTTTAGGGACTGAGCAACAAGACCGACGAATCGAGAGAAGGAGCCACGTTTACCTTGTTGAGGATTATTGAGAGGAGTACTCCCCTTGGTTAATTAAGAGGAAGATCATGAGTTTATGACTAAGGAACACTATCTCCATTGGTATCCGGTCTTTTGAGGAAACCAAAACAAACCAAAAACAAAGCCATGAGAGCTTGCTTATGAAGTAAACAATACCGTATAATTGTGGAGGTTCCTGATTCTTAATATGGTATCGGAACTATGCCCTTAACTTAGTCATGCCAATAAAATCCTCAAGTGTCGAACGAAAAAGTTGTGAGCCTCAAAGGGGTACTTTATTCAAGGGCTCTAGAGAAAGAGTTGAGTCTCGATTAAGAGGAGGCTATTCGATAGTAGCTCTGAAGAAGGAGGTTTCAAGGGAGGCTCTATGGTGTACTTTTTTCGAGTAAAAGATTGTTGAGGATTAATGAGAGAAGTAGACCTCAAGGAATATGATGAACTAATAAGAGGTTTGTGATTCCTGCTTTACCTCTAGGAAGAGCCAGTGCCCGATATGAATGAAATAAAAGCTCTACCTCTCCACCTGAAAATTATACTTGAACCTCCTCCTGTGCCCAAACCTGAACAACAATTCGTAGAAGACTGATGCTGTTAGTTCAGATGATCAAGGTCATAGTCGTCTGGCACTGGCTTTGTTTGCTGGCTTAGCAGCTAATGGCACAAATGAATCCTGGGAAGCTTTCCCTTCTTCCAATCGACAGCCAGAAGTAACCCATGGCACGGCAGACGCCTGCTGCTGAACATGGGAAAGCGGATTGGGAATTGGCCTTGATATAGACGGCAAGCAATTTAACGTGGGAGAGAGCAGCACTTGGTGGTGGATTTGATCCATTATTGTTAAATGGCATGTATGATCAAAGAATAGTTAGACTGCATACCAGCACTGCCCAATTAAGTGGTAGAAGTGCTAGCAGTCTACAAAACTCCTGATTTGGCTCTTCCAGCCCCAGATGGAACCATTCAAACGGTTAATCAGGATCCTTTCGCTGCATCCTAAAGCATCCTGCCTCTGTCATATGTGCAAATGGTCGATATGGAGAAGAAATTACAATTTCTAGTTGAGCAACAACAAATATGGTAGCGGTATACAAGAGATGAACCTCCACAATGAAATGATATTGTCTATTTTAAACATAAGTTATCGTAACTTTACTTTTTGTTTAACCAAAAGGCTTGATAAAAGATGCTGGGCAAGACTAGTTTGACCAAAATCAGTAACCACTCGAGATACTTCACTGCGGGACCAGTGATTCGAGTGCCCTATGGAATGCCTTGGGTTAGGAGTGAGTGGGTATTACTACACTCAGTGATGCCTACCTTTGCCTTGCATCTTTACTTTACTCTCTTTGGTGTGGTTATAGCTCTATTAAATTTCTAAACTTTCATTAGACGTCTCGTTAGGAATCAATTGTTCTCTTGATAATAAATTCAAATTTTATGTCTATTATAATTTTAAGCTTTTAAATTAAATTTATAATTTTAAAAAGTTTACACGGGTATGTATTATGTATAGAATCATTCAACTAATCCATAATTATTTGCTTCATAAAGTTTTTTTCAAGAACCAGGCATTGATGGGTATTATTGGAGCTTCTTAGCTGTGGATTGTTGGACTTGGCAGCCCTGCGGAATACTGCTGAAATTCGCATGTGGTTTACAGGTACGCATCTGCTTCATAGTAATAAAATATTTACATCCAGAAATTATTGAAATTGTTTATTATCTGTTGCCTGATGGATTTGGTATTTAAAATTATTATTTTTAATTCTTATTTTTGTTGGCTTGGACAAGAGTTAAGGGGGCAACAACGTTGAGAATATCAGCCTTGTCCTAATTTGAAAGCCAAGGGTTGGGAGAAAAAGGTTAAATTATTAGTGATAATAAAAACTTTAAATTAGAAAAGAGTGAATATATTTTTTCGAAATTTATATGAAAAATATTAATACATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGAAAAATCAATTGAAAGTTATATAA

mRNA sequence

ATGTACGGTGGCTCTACGCTGCCATTCCGGCGTCTTTTTCGCTTCATTATTTTTCACTCACTGAACCACTGTTTTCAGCTTGCTTTTAAACTCCAGCGATTGAAGAATGTTGTTTTTGCTTATTCGAGGCCGTTAACGACCGATCGGATTCTTATCGTGCAGAAAAATCAATTGAAAGTTATATAA

Coding sequence (CDS)

ATGTACGGTGGCTCTACGCTGCCATTCCGGCGTCTTTTTCGCTTCATTATTTTTCACTCACTGAACCACTGTTTTCAGCTTGCTTTTAAACTCCAGCGATTGAAGAATGTTGTTTTTGCTTATTCGAGGCCGTTAACGACCGATCGGATTCTTATCGTGCAGAAAAATCAATTGAAAGTTATATAA

Protein sequence

MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPLTTDRILIVQKNQLKVI
Homology
[Close]
BLAST of Carg02881 vs. NCBI nr
Match: KAG7024458.1 (hypothetical protein SDJN02_13273, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 7.5e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPLTTDRILIVQKNQLKV 60
          MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPLTTDRILIVQKNQLKV
Sbjct: 1  MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPLTTDRILIVQKNQLKV 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]
BLAST of Carg02881 vs. NCBI nr
Match: XP_022976220.1 (uncharacterized protein LOC111476675 [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPLTTDRILIVQKNQL 59
          MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKN+VFAYSRPLTTDRILIVQ ++L
Sbjct: 1  MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNIVFAYSRPLTTDRILIVQGSRL 58

[Close]
BLAST of Carg02881 vs. NCBI nr
Match: KAG6591569.1 (putative clathrin assembly protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG6591606.1 putative clathrin assembly protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPLTTDRILIVQKN 57
          MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPL TDRILIVQ++
Sbjct: 1  MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPL-TDRILIVQES 55

[Close]
BLAST of Carg02881 vs. ExPASy TrEMBL
Match: A0A6J1IIW0 (uncharacterized protein LOC111476675 OS=Cucurbita maxima OX=3661 GN=LOC111476675 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.4e-22
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNVVFAYSRPLTTDRILIVQKNQL 59
          MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKN+VFAYSRPLTTDRILIVQ ++L
Sbjct: 1  MYGGSTLPFRRLFRFIIFHSLNHCFQLAFKLQRLKNIVFAYSRPLTTDRILIVQGSRL 58

The following BLAST results are available for this feature:
BLAST of Carg02881 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024458.17.5e-25100.00hypothetical protein SDJN02_13273, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022976220.11.7e-2193.10uncharacterized protein LOC111476675 [Cucurbita maxima][more]
KAG6591569.12.1e-1994.64putative clathrin assembly protein, partial [Cucurbita argyrosperma subsp. soror... [more]
BLAST of Carg02881 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02881 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IIW08.4e-2293.10uncharacterized protein LOC111476675 OS=Cucurbita maxima OX=3661 GN=LOC111476675... [more]
BLAST of Carg02881 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02881-RACarg02881-RAmRNA