Carg02860 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02860
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA ligase
Location	Carg_Chr09: 2093598 .. 2093831 (-)
RNA-Seq Expression	Carg02860
Synteny	Carg02860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTTGTTGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTATGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

mRNA sequence

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTTGTTGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTATGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

Coding sequence (CDS)

ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTTGTTGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTATGATCCTTCGAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTATGGCGGCAAAATGA

Protein sequence

MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK

Homology

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: KAG6591551.1 (hypothetical protein SDJN03_13897, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024438.1 hypothetical protein SDJN02_13253, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
          MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA
Sbjct: 1  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60

Query: 61 SRLPPSPPASQRFMAAK 78
          SRLPPSPPASQRFMAAK
Sbjct: 61 SRLPPSPPASQRFMAAK 77

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 5.4e-28
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 47  MAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 106

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S+R   AK
Sbjct: 107 SRLPASPPTSRRLSPAK 123

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: KAG7031776.1 (hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.3 bits (334), Expect = 9.1e-28
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 47  MAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 106

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S R   AK
Sbjct: 107 SRLPASPPTSPRLSPAK 123

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothetical protein SDJN03_01481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.3 bits (334), Expect = 9.1e-28
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 48  MAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 107

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S R   AK
Sbjct: 108 SRLPASPPTSPRLSPAK 124

[Close]

BLAST of Carg02860 vs. NCBI nr
Match: XP_022981208.1 (uncharacterized protein LOC111480417 [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-27
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P++RG+CRNLVARIGR  RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 48  MAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 107

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S+R   AK
Sbjct: 108 SRLPASPPTSRRLSPAK 124

[Close]

BLAST of Carg02860 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.4e-28
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 48  MAAEFPELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 107

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S R   AK
Sbjct: 108 SRLPASPPTSPRLSPAK 124

[Close]

BLAST of Carg02860 vs. ExPASy TrEMBL
Match: A0A6J1J1H3 (uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFA 60
           MA E P++RG+CRNLVARIGR  RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFA
Sbjct: 48  MAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFA 107

Query: 61  SRLPPSPPASQRFMAAK 78
           SRLP SPP S+R   AK
Sbjct: 108 SRLPASPPTSRRLSPAK 124

[Close]

BLAST of Carg02860 vs. ExPASy TrEMBL
Match: A0A6J1CC83 (uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009386 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.6e-23
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 2   APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFAS 61
           A E  +LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDE  R DD++PIRDFAS
Sbjct: 51  ASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFAS 110

Query: 62  RLPPSPPASQRFMAAK 78
           RLP SP +S  F  AK
Sbjct: 111 RLPASPHSSPIFQPAK 126

[Close]

BLAST of Carg02860 vs. ExPASy TrEMBL
Match: A0A5A7VBS3 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHS DFRYDPSSYALNFEDEQVRDD+E+PIRDF
Sbjct: 43  MTSDLPELRGMCRSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDF 102

Query: 61  ASRLPPSPPASQRFM 75
            SRLP SPP     M
Sbjct: 103 TSRLPASPPPPVNLM 117

[Close]

BLAST of Carg02860 vs. ExPASy TrEMBL
Match: A0A1S3BVQ9 (uncharacterized protein LOC103493778 OS=Cucumis melo OX=3656 GN=LOC103493778 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1   MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDF 60
           M  +LP+LRG+CR+LVARI   S RRYHHS DFRYDPSSYALNFEDEQVRDD+E+PIRDF
Sbjct: 43  MTSDLPELRGMCRSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDF 102

Query: 61  ASRLPPSPPASQRFM 75
            SRLP SPP     M
Sbjct: 103 TSRLPASPPPPVNLM 117

[Close]

BLAST of Carg02860 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 7.8e-09
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 5   LPKLRGLCRNLVARI----------GRSCRRYHHSTDFRYDPSSYALNFEDEQVRDD-DE 64
           L K    C++L+ R+          G+  RR  H+ DF YDPSSYALNF+     D+ D 
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRR--HTADFHYDPSSYALNFDKGDEDDNIDR 129

Query: 65  YPIRDFASRLPPSPPASQR 73
           +P+R+F++RLP SPP+S +
Sbjct: 130 FPLRNFSARLPHSPPSSAK 146

[Close]

BLAST of Carg02860 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 8.6e-08
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 7   KLRGLCRNLVARIGRSCR-----------RYHHST----DFRYDPSSYALNFEDEQVRDD 66
           +LR  CR + +RI  +CR            +HHS     DF YDP SYALNFED  VR D
Sbjct: 64  ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFED-NVRAD 123

Query: 67  DEYPIRDFASRLPPSPPASQR 73
           D+    +F +RLP SP    R
Sbjct: 124 DDGSFPNFTARLPQSPVTKTR 143

[Close]

BLAST of Carg02860 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.6e-04
Identity = 27/64 (42.19%), Postives = 33/64 (51.56%), Query Frame = 0


Query: 13  RNLVARIGRSCRR---YHHSTDFRYDPSSYALNFEDEQVRDDDEY---PIRDFASRLPPS 71
           +  + R  R  RR   +  S  FRYDP SY L+FEDE   DDDE     +R F+ R    
Sbjct: 59  KTFIRRFNRDPRRGQDWDDSDKFRYDPVSYTLSFEDEDKDDDDEAGVGGVRSFSMRYASV 118

The following BLAST results are available for this feature:

BLAST of Carg02860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591551.1	2.4e-36	100.00	hypothetical protein SDJN03_13897, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023523424.1	5.4e-28	83.12	uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]	[more]
KAG7031776.1	9.1e-28	83.12	hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940408.1	9.1e-28	83.12	uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothet...	[more]
XP_022981208.1	3.5e-27	80.52	uncharacterized protein LOC111480417 [Cucurbita maxima]	[more]

BLAST of Carg02860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FP70	4.4e-28	83.12	uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]
A0A6J1J1H3	1.7e-27	80.52	uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417...	[more]
A0A6J1CC83	9.6e-23	75.00	uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5A7VBS3	1.1e-21	73.33	DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=...	[more]
A0A1S3BVQ9	1.1e-21	73.33	uncharacterized protein LOC103493778 OS=Cucumis melo OX=3656 GN=LOC103493778 PE=...	[more]

BLAST of Carg02860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35090.1	7.8e-09	41.77	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G11070.1	8.6e-08	43.21	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT3G48020.1	2.6e-04	42.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..77
None	No IPR available	PANTHER	PTHR33168:SF61	SUBFAMILY NOT NAMED	coord: 3..70
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 3..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02860-RA	Carg02860-RA	mRNA