Carg02818 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02818
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 1873620 .. 1874303 (+)
RNA-Seq ExpressionCarg02818
SyntenyCarg02818
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTTGCTTCTTCTTCACCTGCTCAGTTCATCATTGCTCAAGTTTCATTTCTCACTAGCTTTACTTTCTAGTCCGACCTAACAAATCGAAGTGTTGGCAAGCCAGGGGTATCGTAGTCGCGATCGATTTCTATCTGCAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTCGCTTGGTACTTCAATTTCAACTCCAGCCTTCGCGTTTTCATTCTATAACACAGCCGCTTCAAGTGCGAAATTCATCATTTGATCTCGAAGTTTTGTCTCAGGTCTACTGGATTTACAGATTAGCGACGGACAGCAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGCAGACAAGAAGGTTAGTGGAACCCTAATTTCTTGATTCTTTACGAAGCTCATAGCTGCAATGCTAACAGAAAAACGTGTTTGATACCATTTCTATTACTGGTTACTGTACCTAACAGTTGAGAATGATACACAGCAGATCTTTTCTTCAATGTCGGTAGAAATAGGTTGTCTCCTCTGTTTCTTTGATCTAATCGATCGGTCTAGTTATAGCTGGTTCTGTAGCTTTCCGCCATGCTTCGTAGAGATACACTAAACGTTAATTTCCAGTAG

mRNA sequence

ACTTTGCTTCTTCTTCACCTGCTCAGTTCATCATTGCTCAAGTTTCATTTCTCACTAGCTTTACTTTCTAGTCCGACCTAACAAATCGAAGTGTTGGCAAGCCAGGGGTATCGTAGTCGCGATCGATTTCTATCTGCAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTCGCTTGTTTTGTCTCAGGTCTACTGGATTTACAGATTAGCGACGGACAGCAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGCAGACAAGAAGCTTTCCGCCATGCTTCGTAGAGATACACTAAACGTTAATTTCCAGTAG

Coding sequence (CDS)

ATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTCGCTTGTTTTGTCTCAGGTCTACTGGATTTACAGATTAGCGACGGACAGCAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGCAGACAAGAAGCTTTCCGCCATGCTTCGTAGAGATACACTAAACGTTAATTTCCAGTAG

Protein sequence

MANQQQVDSRPWILDVVPFIVVILIAAHVLACFVSGLLDLQISDGQQASKAESTLKNSLIYLAADKKLSAMLRRDTLNVNFQ
Homology
BLAST of Carg02818 vs. NCBI nr
Match: KAG7024397.1 (hypothetical protein SDJN02_13211 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLACFVSGLLDLQISDGQQASKAESTLKNSLI 60
          MANQQQVDSRPWILDVVPFIVVILIAAHVLACFVSGLLDLQISDGQQASKAESTLKNSLI
Sbjct: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLACFVSGLLDLQISDGQQASKAESTLKNSLI 60

Query: 61 YLAADKKLSAMLRRDTLNVNFQ 83
          YLAADKKLSAMLRRDTLNVNFQ
Sbjct: 61 YLAADKKLSAMLRRDTLNVNFQ 82

BLAST of Carg02818 vs. NCBI nr
Match: KAE8649931.1 (hypothetical protein Csa_012813 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 5.4e-10
Identity = 44/67 (65.67%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLACFVSGLLDLQISDGQQASKAESTLKNSLI 60
          MAN+  VDSRPWILDVVPFIVVILI AHVLA                ASK ESTLKNSLI
Sbjct: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLAL---------------ASKEESTLKNSLI 52

Query: 61 YLAADKK 68
          YL  DKK
Sbjct: 61 YLTEDKK 52

BLAST of Carg02818 vs. NCBI nr
Match: XP_022935881.1 (uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935882.1 uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935883.1 uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935884.1 uncharacterized protein LOC111442654 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-06
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MANQQQVDSRPWILDVVPFIVVILIAAHVLA
Sbjct: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 31

BLAST of Carg02818 vs. NCBI nr
Match: KAG7037665.1 (hypothetical protein SDJN02_01295, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-06
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0

Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MANQQQVDSRPWILD+VPFIVVILIAAHVLA
Sbjct: 63 MANQQQVDSRPWILDLVPFIVVILIAAHVLA 93

BLAST of Carg02818 vs. NCBI nr
Match: XP_023535177.1 (uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535179.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0

Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MANQQQVDSRPWILD VPFIVVILIAAHVLA
Sbjct: 1  MANQQQVDSRPWILDAVPFIVVILIAAHVLA 31

BLAST of Carg02818 vs. ExPASy TrEMBL
Match: A0A6J1F6U7 (uncharacterized protein LOC111442654 OS=Cucurbita moschata OX=3662 GN=LOC111442654 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MANQQQVDSRPWILDVVPFIVVILIAAHVLA
Sbjct: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 31

BLAST of Carg02818 vs. ExPASy TrEMBL
Match: A0A6J1IQM9 (uncharacterized protein LOC111477303 OS=Cucurbita maxima OX=3661 GN=LOC111477303 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0

Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MANQQQVDSRPWILDVVPFIV ILIAAHVLA
Sbjct: 1  MANQQQVDSRPWILDVVPFIVAILIAAHVLA 31

BLAST of Carg02818 vs. ExPASy TrEMBL
Match: A0A1S3BWH4 (uncharacterized protein LOC103493902 OS=Cucumis melo OX=3656 GN=LOC103493902 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 1   MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
           MANQQ VDSRPWILDVVPFIVVILI AHVLA
Sbjct: 94  MANQQNVDSRPWILDVVPFIVVILITAHVLA 124

BLAST of Carg02818 vs. ExPASy TrEMBL
Match: A0A0A0L5I3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651730 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MAN+  VDSRPWILDVVPFIVVILI AHVLA
Sbjct: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLA 31

BLAST of Carg02818 vs. ExPASy TrEMBL
Match: A0A7N2KTP9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 36/83 (43.37%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 1  MANQQQVDS-RPWILDVVPFIVVILIAAHVLACF------------------------VS 59
          M N+Q   S RPW+LD VPF+VV+LIAAHVLA                          +S
Sbjct: 1  MTNEQHSSSPRPWLLDAVPFVVVLLIAAHVLALVHSQKTTSFSLSNSNQISDFFSLHTLS 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7024397.11.1e-34100.00hypothetical protein SDJN02_13211 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAE8649931.15.4e-1065.67hypothetical protein Csa_012813 [Cucumis sativus][more]
XP_022935881.12.1e-06100.00uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935882.1 unchar... [more]
KAG7037665.14.7e-0696.77hypothetical protein SDJN02_01295, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023535177.16.1e-0696.77uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178.... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F6U71.0e-06100.00uncharacterized protein LOC111442654 OS=Cucurbita moschata OX=3662 GN=LOC1114426... [more]
A0A6J1IQM93.0e-0696.77uncharacterized protein LOC111477303 OS=Cucurbita maxima OX=3661 GN=LOC111477303... [more]
A0A1S3BWH41.1e-0593.55uncharacterized protein LOC103493902 OS=Cucumis melo OX=3656 GN=LOC103493902 PE=... [more]
A0A0A0L5I31.3e-0487.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651730 PE=4 SV=1[more]
A0A7N2KTP92.8e-0443.37Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35755PROTEIN, PUTATIVE-RELATEDcoord: 1..31
NoneNo IPR availablePANTHERPTHR35755:SF3EXPRESSED PROTEINcoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02818-RACarg02818-RAmRNA