Carg02732 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02732
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Histone H3.2
Location	Carg_Chr02: 7161784 .. 7162462 (+)
RNA-Seq Expression	Carg02732
Synteny	Carg02732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGATCTTGCGTATTATTGGTCAGTTAGTAGTGCCACGGATCGTGATCCAAGCTTTAACAAATCTCCACCGTTGAATTGCCTCGTTGTTTACGCCCAAATCGAACCTCCAAAAGTTTCAAGAGGCGTGTCTTTTCTTCTCAAGTTCCCGCCATTCGTAATTTGGCCTCTATATAAGAAACTTCAAAACCCTATTTCTCCGCGCTTCAGTTTCAGCATTCTCAAGCCCGAGTCGAACTACGAATTCTCTGGAGATCTTCTTTACTAATGGCTCGCACTAAGCAAACTGCTAGGAAATCCACCGGAGGAAAGGCTCCGAGGAAGCAACTTGCAACCAAGGCTGCTAGGAAATCGGCTCCGGCGACCGGCGGAGTGAAGAAGCCACACAGGTTCAGGCCGGGGACGGTGGCGTTGAGAGAGATCCGCAAGTATCAGAAGAGTACGGAGCTTCTCATTAGGAAGCTTCCGTTTCAAAGATTGGTGAGGGAAATTGCTCAGGATTTCAAGACTGACCTTCGTTTCCAGAGCAGCGCTGTAGCGGCTCTTCAGGAGGCTGCTGAGGCGTATCTCGTTGGGCTCTTCGAAGACACAAATCTTTGTGCCATTCATGCCAAGAGGGTTACCATTATGCCCAAGGATATCCAACTCGCTAGAAGAATCAGAGGCGAGAGGGCTTAA

mRNA sequence

ATGCCGATCTTGCGTATTATTGGTCAGTTAGTAGTGCCACGGATCTTTCAGCATTCTCAAGCCCGAGTCGAACTACGAATTCTCTGGAGATCTTCTTTACTAATGGCTCGCACTAAGCAAACTGCTAGGAAATCCACCGGAGGAAAGGCTCCGAGGAAGCAACTTGCAACCAAGGCTGCTAGGAAATCGGCTCCGGCGACCGGCGGAGTGAAGAAGCCACACAGGTTCAGGCCGGGGACGGTGGCGTTGAGAGAGATCCGCAAGTATCAGAAGAGTACGGAGCTTCTCATTAGGAAGCTTCCGTTTCAAAGATTGGTGAGGGAAATTGCTCAGGATTTCAAGACTGACCTTCGTTTCCAGAGCAGCGCTGTAGCGGCTCTTCAGGAGGCTGCTGAGGCGTATCTCGTTGGGCTCTTCGAAGACACAAATCTTTGTGCCATTCATGCCAAGAGGGTTACCATTATGCCCAAGGATATCCAACTCGCTAGAAGAATCAGAGGCGAGAGGGCTTAA

Coding sequence (CDS)

ATGCCGATCTTGCGTATTATTGGTCAGTTAGTAGTGCCACGGATCTTTCAGCATTCTCAAGCCCGAGTCGAACTACGAATTCTCTGGAGATCTTCTTTACTAATGGCTCGCACTAAGCAAACTGCTAGGAAATCCACCGGAGGAAAGGCTCCGAGGAAGCAACTTGCAACCAAGGCTGCTAGGAAATCGGCTCCGGCGACCGGCGGAGTGAAGAAGCCACACAGGTTCAGGCCGGGGACGGTGGCGTTGAGAGAGATCCGCAAGTATCAGAAGAGTACGGAGCTTCTCATTAGGAAGCTTCCGTTTCAAAGATTGGTGAGGGAAATTGCTCAGGATTTCAAGACTGACCTTCGTTTCCAGAGCAGCGCTGTAGCGGCTCTTCAGGAGGCTGCTGAGGCGTATCTCGTTGGGCTCTTCGAAGACACAAATCTTTGTGCCATTCATGCCAAGAGGGTTACCATTATGCCCAAGGATATCCAACTCGCTAGAAGAATCAGAGGCGAGAGGGCTTAA

Protein sequence

MPILRIIGQLVVPRIFQHSQARVELRILWRSSLLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

[Close]

BLAST of Carg02732 vs. NCBI nr
Match: KAG7035840.1 (histone H3.2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.8 bits (813), Expect = 5.8e-83
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MPILRIIGQLVVPRIFQHSQARVELRILWRSSLLMARTKQTARKSTGGKAPRKQLATKAA 60
           MPILRIIGQLVVPRIFQHSQARVELRILWRSSLLMARTKQTARKSTGGKAPRKQLATKAA
Sbjct: 1   MPILRIIGQLVVPRIFQHSQARVELRILWRSSLLMARTKQTARKSTGGKAPRKQLATKAA 60

Query: 61  RKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 120
           RKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ
Sbjct: 61  RKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ 120

Query: 121 SSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 171
           SSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 121 SSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 170

[Close]

BLAST of Carg02732 vs. NCBI nr
Match: XP_021631864.1 (uncharacterized protein LOC110629262 [Manihot esculenta])

HSP 1 Score: 258.1 bits (658), Expect = 5.4e-65
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 31  SSLLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ 90
           SS+ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ
Sbjct: 414 SSVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ 473

Query: 91  KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 150
           KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct: 474 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 533

Query: 151 RVTIMPKDIQLARRIRGERA 171
           RVTIMPKDIQLARRIRGERA
Sbjct: 534 RVTIMPKDIQLARRIRGERA 553

[Close]

BLAST of Carg02732 vs. NCBI nr
Match: XP_022985893.1 (histone H3.2-like [Cucurbita maxima])

HSP 1 Score: 257.7 bits (657), Expect = 7.1e-65
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 25  LRILWRSSLLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR 84
           LR+L  SS LMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR
Sbjct: 23  LRLLIFSS-LMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR 82

Query: 85  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 144
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL
Sbjct: 83  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 142

Query: 145 CAIHAKRVTIMPKDIQLARRIRGERA 171
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 143 CAIHAKRVTIMPKDIQLARRIRGERA 167

[Close]

BLAST of Carg02732 vs. NCBI nr
Match: TXG59768.1 (hypothetical protein EZV62_014341 [Acer yangbiense])

HSP 1 Score: 257.3 bits (656), Expect = 9.3e-65
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 29  WRSSLLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRK 88
           WRS+ LMARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRK
Sbjct: 8   WRSNTLMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRK 67

Query: 89  YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH 148
           YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIH
Sbjct: 68  YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH 127

Query: 149 AKRVTIMPKDIQLARRIRGERA 171
           AKRVTIMPKDIQLARRIRGERA
Sbjct: 128 AKRVTIMPKDIQLARRIRGERA 149

[Close]

BLAST of Carg02732 vs. NCBI nr
Match: KAB8101322.1 (hypothetical protein EE612_032080, partial [Oryza sativa] >BAS96276.1 Os06g0160100, partial [Oryza sativa Japonica Group])

HSP 1 Score: 257.3 bits (656), Expect = 9.3e-65
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 31  SSLLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ 90
           SS  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ
Sbjct: 85  SSFSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ 144

Query: 91  KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 150
           KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct: 145 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 204

Query: 151 RVTIMPKDIQLARRIRGERA 171
           RVTIMPKDIQLARRIRGERA
Sbjct: 205 RVTIMPKDIQLARRIRGERA 224

[Close]

BLAST of Carg02732 vs. ExPASy Swiss-Prot
Match: P59226 (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.9e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. ExPASy Swiss-Prot
Match: Q6LBE3 (Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3)

HSP 1 Score: 254.6 bits (649), Expect = 7.9e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. ExPASy Swiss-Prot
Match: Q6LCK1 (Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3)

HSP 1 Score: 254.6 bits (649), Expect = 7.9e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. ExPASy Swiss-Prot
Match: Q71T45 (Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3)

HSP 1 Score: 254.6 bits (649), Expect = 7.9e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. ExPASy Swiss-Prot
Match: P69246 (Histone H3.2 OS=Zea mays OX=4577 GN=H3C2 PE=1 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.9e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. ExPASy TrEMBL
Match: A0A6J1JEX8 (Histone H3.2 OS=Cucurbita maxima OX=3661 GN=LOC111483807 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.4e-65
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 25  LRILWRSSLLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR 84
           LR+L  SS LMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR
Sbjct: 23  LRLLIFSS-LMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR 82

Query: 85  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 144
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL
Sbjct: 83  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 142

Query: 145 CAIHAKRVTIMPKDIQLARRIRGERA 171
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 143 CAIHAKRVTIMPKDIQLARRIRGERA 167

[Close]

BLAST of Carg02732 vs. ExPASy TrEMBL
Match: A0A287VNH8 (Histone domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=2)

HSP 1 Score: 257.7 bits (657), Expect = 3.4e-65
Identity = 142/154 (92.21%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 20  QARVELRILWRSSLL---MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRF 79
           Q  + L+ L RSS L   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRF
Sbjct: 8   QRSIHLQTLARSSSLSGPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRF 67

Query: 80  RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLV 139
           RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLV
Sbjct: 68  RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLV 127

Query: 140 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 171
           GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 128 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 161

[Close]

BLAST of Carg02732 vs. ExPASy TrEMBL
Match: A0A5C7HSE5 (Histone H3 OS=Acer yangbiense OX=1000413 GN=EZV62_014341 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.5e-65
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 29  WRSSLLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRK 88
           WRS+ LMARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRK
Sbjct: 8   WRSNTLMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRK 67

Query: 89  YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH 148
           YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIH
Sbjct: 68  YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH 127

Query: 149 AKRVTIMPKDIQLARRIRGERA 171
           AKRVTIMPKDIQLARRIRGERA
Sbjct: 128 AKRVTIMPKDIQLARRIRGERA 149

[Close]

BLAST of Carg02732 vs. ExPASy TrEMBL
Match: A0A2G2XRT1 (Histone H3.2 OS=Capsicum baccatum OX=33114 GN=CQW23_02570 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.5e-65
Identity = 140/148 (94.59%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 26  RILWRSSL---LMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVA 85
           RI W+  L    MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVA
Sbjct: 128 RIYWKQLLYKVAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVA 187

Query: 86  LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDT 145
           LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDT
Sbjct: 188 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDT 247

Query: 146 NLCAIHAKRVTIMPKDIQLARRIRGERA 171
           NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 248 NLCAIHAKRVTIMPKDIQLARRIRGERA 275

[Close]

BLAST of Carg02732 vs. ExPASy TrEMBL
Match: A0A0P0WSK4 (Os06g0160100 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0160100 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.5e-65
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 31  SSLLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ 90
           SS  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ
Sbjct: 85  SSFSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ 144

Query: 91  KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 150
           KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK
Sbjct: 145 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 204

Query: 151 RVTIMPKDIQLARRIRGERA 171
           RVTIMPKDIQLARRIRGERA
Sbjct: 205 RVTIMPKDIQLARRIRGERA 224

[Close]

BLAST of Carg02732 vs. TAIR 10
Match: AT1G09200.1 (Histone superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. TAIR 10
Match: AT3G27360.1 (Histone superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. TAIR 10
Match: AT5G10390.1 (Histone superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. TAIR 10
Match: AT5G10400.1 (Histone superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Carg02732 vs. TAIR 10
Match: AT5G65360.1 (Histone superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 35  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 94
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 95  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 154
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 155 MPKDIQLARRIRGERA 171
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Carg02732 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035840.1	5.8e-83	100.00	histone H3.2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_021631864.1	5.4e-65	98.57	uncharacterized protein LOC110629262 [Manihot esculenta]	[more]
XP_022985893.1	7.1e-65	97.26	histone H3.2-like [Cucurbita maxima]	[more]
TXG59768.1	9.3e-65	95.77	hypothetical protein EZV62_014341 [Acer yangbiense]	[more]
KAB8101322.1	9.3e-65	98.57	hypothetical protein EE612_032080, partial [Oryza sativa] >BAS96276.1 Os06g01601...	[more]

BLAST of Carg02732 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59226	7.9e-67	100.00	Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2	[more]
Q6LBE3	7.9e-67	100.00	Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3	[more]
Q6LCK1	7.9e-67	100.00	Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3	[more]
Q71T45	7.9e-67	100.00	Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3	[more]
P69246	7.9e-67	100.00	Histone H3.2 OS=Zea mays OX=4577 GN=H3C2 PE=1 SV=2	[more]

BLAST of Carg02732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEX8	3.4e-65	97.26	Histone H3.2 OS=Cucurbita maxima OX=3661 GN=LOC111483807 PE=3 SV=1	[more]
A0A287VNH8	3.4e-65	92.21	Histone domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE...	[more]
A0A5C7HSE5	4.5e-65	95.77	Histone H3 OS=Acer yangbiense OX=1000413 GN=EZV62_014341 PE=3 SV=1	[more]
A0A2G2XRT1	4.5e-65	94.59	Histone H3.2 OS=Capsicum baccatum OX=33114 GN=CQW23_02570 PE=3 SV=1	[more]
A0A0P0WSK4	4.5e-65	98.57	Os06g0160100 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]

BLAST of Carg02732 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09200.1	5.6e-68	100.00	Histone superfamily protein	[more]
AT3G27360.1	5.6e-68	100.00	Histone superfamily protein	[more]
AT5G10390.1	5.6e-68	100.00	Histone superfamily protein	[more]
AT5G10400.1	5.6e-68	100.00	Histone superfamily protein	[more]
AT5G65360.1	5.6e-68	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 92..109 score: 97.46 coord: 148..169 score: 94.86 coord: 114..132 score: 85.01 coord: 51..65 score: 92.32 coord: 68..89 score: 89.33 coord: 37..51 score: 97.1 coord: 132..148 score: 96.93
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 68..170 e-value: 8.4E-74 score: 261.2
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 22..170
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 49..55
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 101..109
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 35..166 e-value: 2.3E-53 score: 180.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 36..170 e-value: 3.2E-75 score: 252.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 36..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..74
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 22..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02732-RA	Carg02732-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity