Carg02727 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02727
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	AP2-like ethylene-responsive transcription factor
Location	Carg_Chr02: 7182309 .. 7183818 (-)
RNA-Seq Expression	Carg02727
Synteny	Carg02727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCCCCACAAGAACTTCGGACACTCTTGGGCACAGAACTTCAATCTATCGCGGTGTCACCAGGTTTACCCTTTTCTAATATAATCTTGAATTCTCAATTTAGGATTTGTGAGTTATTATATTGTATATTGTTGTAGGCATCGATGGACGGGAAGATATGAAGCACATTTGTGGGATAATAGTTGTAGGAGGGAAGGGCAGTCAAGGAAGGGTCGTCAAGGTATTTTATATTTATATATATATATATATTAAAGTTTCAAAGCCTAACTTTTTTTTTTTTTTTTTTTGACTTTCTTCGATGCTCGTCTTTGTCTCTCCCATCATCTCTCGACCAGTCTATTTGGGTGAGTATTACTTAGAATATTTTCTTTTACTTTTAGAATTTAATTGGTAGTTTATACCTATTTAAACATATAGAACATTAGATTTTCAATCCATTATTAATATTATATATATATATAACAAGATTTTAAGGTTTTGTTTGTTTGTAAATGATGATGGCTCAGGAGGGTACGATAATGAAGACAGAGCTGCTAGGGCTTATGATCTTGTTGCGTTGAAGTACTGGGGAACATCCACCACTACAAACTTTCCTGTACTTAACCATTTTAATTTGTGCAACGACTCATATCCATCACTAATAGATATTGTTCTCTTTGTACTTTTTCTTTCGTACTTTTTCTCTAGGTTTTAAAATGCGCGTCTAATCGGAGAAGGTTTCCATACCCTTATAAATGATGGTGGAGAAGGTTTCCATACCCTTATAAATGATGGTGGAGAAGGTTTCCATACCCTTATAAATGATGGTTTGTTCTCCTCCCTAATCAATGTGGAACCACAATCCACTCTCTTTCCCACATTGGTTAGGGAGCAGAACAAACCACTATTTATAAGAATGTGGAAACCTTCCTCTAATAAACGTGTTTTAAAACTTTGAGGGGAAGCTCGAAAGGAAAAGCACAAAAAAGATAATATATACTAGAGGTGTGTCTAGGTACATTTTCAGGGGAGGAAAGGAAGCACGTGACAAGACAAGAATTTGTGGCTTCTAATCAATTTGTGGCTGCCATTAGAAGGTTCTTCTATCAACACTATTGCTAATCAATCAATCAATTGTGTTTTTCTTTTTAATCACATTCTAAATAATAAATATAAATATTGCTGATTTCAGGAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTATCGTGGTGTTACAAGGTTCAAAATTTCCCATTTTTTTGGAATCTTTTTATTTGTTCATAATAATTAATTATTATAAGAATGTGATGTGTTGTGGGGTTAATTAAAATAGGCACCACCAGCATGGAAGATGGCAGGCCAGGATTGGACGAGTGGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGTAAGCTCTCAACATTATATCCTATCTATTATTTGTTTAAAGACATAGCCGCCATCAAATTCAGAGGGCTTAACGCAGTCAGTCACAAACTTCCACGAGTCGTTATGACGTGA

mRNA sequence

ATGTCACCCCCACAAGAACTTCGGACACTCTTGGGCACAGAACTTCAATCTATCGCGGTGTCACCAGGCATCGATGGACGGGAAGATATGAAGCACATTTGTGGGATAATAGTTGTAGGAGGGAAGGGCAGTCAAGGAAGGGTCGTCAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTATCGTGGTGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCCAGGATTGGACGAGTGGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGTAAGCTCTCAACATTATATCCTATCTATTATTTGTTTAAAGACATAGCCGCCATCAAATTCAGAGGGCTTAACGCAGTCAGTCACAAACTTCCACGAGTCGTTATGACGTGA

Coding sequence (CDS)

ATGTCACCCCCACAAGAACTTCGGACACTCTTGGGCACAGAACTTCAATCTATCGCGGTGTCACCAGGCATCGATGGACGGGAAGATATGAAGCACATTTGTGGGATAATAGTTGTAGGAGGGAAGGGCAGTCAAGGAAGGGTCGTCAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTATCGTGGTGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCCAGGATTGGACGAGTGGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGTAAGCTCTCAACATTATATCCTATCTATTATTTGTTTAAAGACATAGCCGCCATCAAATTCAGAGGGCTTAACGCAGTCAGTCACAAACTTCCACGAGTCGTTATGACGTGA

Protein sequence

MSPPQELRTLLGTELQSIAVSPGIDGREDMKHICGIIVVGGKGSQGRVVKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAIKFRGLNAVSHKLPRVVMT

Homology

[Close]

BLAST of Carg02727 vs. NCBI nr
Match: KAG7035845.1 (AP2-like ethylene-responsive transcription factor PLT1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.5 bits (659), Expect = 3.1e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSPPQELRTLLGTELQSIAVSPGIDGREDMKHICGIIVVGGKGSQGRVVKSSGFSRGASM 60
           MSPPQELRTLLGTELQSIAVSPGIDGREDMKHICGIIVVGGKGSQGRVVKSSGFSRGASM
Sbjct: 1   MSPPQELRTLLGTELQSIAVSPGIDGREDMKHICGIIVVGGKGSQGRVVKSSGFSRGASM 60

Query: 61  YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAIKFRGLNAVSH 120
           YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAIKFRGLNAVSH
Sbjct: 61  YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAIKFRGLNAVSH 120

Query: 121 KLPRVVMT 129
           KLPRVVMT
Sbjct: 121 KLPRVVMT 128

[Close]

BLAST of Carg02727 vs. NCBI nr
Match: PQM40714.1 (AP2-like ethylene-responsive transcription factor AIL1 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-27
Identity = 79/142 (55.63%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 5   QELRTLLGTELQSIAVSPGIDGREDMKHICGIIVVGGKGSQGRV---------------- 64
           + L TLL +EL S  VSPGI G  DM+ ICGIIV   KG QG+                 
Sbjct: 132 ENLLTLLVSELLSSVVSPGIGGLGDMRPICGIIVAEKKGKQGKEDKLSTYEKELEEMKNM 191

Query: 65  ----------VKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLY 121
                      KSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS      
Sbjct: 192 TRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAA 251

[Close]

BLAST of Carg02727 vs. NCBI nr
Match: EEE61288.1 (hypothetical protein OsJ_15374 [Oryza sativa Japonica Group])

HSP 1 Score: 124.4 bits (311), Expect = 7.1e-25
Identity = 72/130 (55.38%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 17  SIAVSPGIDGREDMKHICGIIVVGGKGSQGRVVK-------------------------- 76
           S++   GIDG+EDMK ICGII VG K    R  +                          
Sbjct: 226 SMSTGSGIDGQEDMKLICGIIAVGEKAKVARGDRMSNYEKELEEMKHMTRQEYIAHLRRN 285

Query: 77  SSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAI 121
           SSGFSRGAS YRGVTRHHQHGRWQARIGRVAGNKD+YLGTFS        Y    DIAAI
Sbjct: 286 SSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDIYLGTFSTEEEAAEAY----DIAAI 345

[Close]

BLAST of Carg02727 vs. NCBI nr
Match: CAE02944.3 (OSJNBa0014K14.16 [Oryza sativa Japonica Group])

HSP 1 Score: 124.4 bits (311), Expect = 7.1e-25
Identity = 74/139 (53.24%), Postives = 82/139 (58.99%), Query Frame = 0


Query: 8   RTLLGTELQSIAVSPGIDGREDMKHICGIIVVGGKGSQGRVVK----------------- 67
           R  + T  Q  ++  GIDG+EDMK ICGII VG K    R  +                 
Sbjct: 267 RKSIDTFGQRTSIYRGIDGQEDMKLICGIIAVGEKAKVARGDRMSNYEKELEEMKHMTRQ 326

Query: 68  ---------SSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIY 121
                    SSGFSRGAS YRGVTRHHQHGRWQARIGRVAGNKD+YLGTFS        Y
Sbjct: 327 EYIAHLRRNSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDIYLGTFSTEEEAAEAY 386

[Close]

BLAST of Carg02727 vs. NCBI nr
Match: GFP95788.1 (ap2-like ethylene-responsive transcription factor plt2 [Phtheirospermum japonicum])

HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24
Identity = 72/131 (54.96%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 16  QSIAVSPGIDGREDMKHICGIIVVGGK---GSQGRVV----------------------- 75
           Q  ++  GIDG  DM+HI GIIV   K   G +G++                        
Sbjct: 101 QRTSIYRGIDGLADMRHIYGIIVAEEKDKPGKEGKMSNYEKEIEEMKHMTRQEYVASLRR 160

Query: 76  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 121
           KSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAA
Sbjct: 161 KSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAY----DIAA 220

[Close]

BLAST of Carg02727 vs. ExPASy Swiss-Prot
Match: Q6PQQ3 (AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana OX=3702 GN=AIL5 PE=2 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 6.2e-24
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 50  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 109
           KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAA
Sbjct: 295 KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAY----DIAA 354

Query: 110 IKFRGLNAVSH 121
           IKFRGLNAV++
Sbjct: 355 IKFRGLNAVTN 361

[Close]

BLAST of Carg02727 vs. ExPASy Swiss-Prot
Match: Q5YGP8 (AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana OX=3702 GN=PLT1 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-24
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 50  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 109
           KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAA
Sbjct: 273 KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAY----DIAA 332

Query: 110 IKFRGLNAVSH 121
           IKFRGLNAV++
Sbjct: 333 IKFRGLNAVTN 339

[Close]

BLAST of Carg02727 vs. ExPASy Swiss-Prot
Match: Q5YGP7 (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-24
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 50  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 109
           KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAA
Sbjct: 282 KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAY----DIAA 341

Query: 110 IKFRGLNAVSH 121
           IKFRGLNAV++
Sbjct: 342 IKFRGLNAVTN 348

[Close]

BLAST of Carg02727 vs. ExPASy Swiss-Prot
Match: Q84Z02 (AP2-like ethylene-responsive transcription factor CRL5 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL5 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-23
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 50  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 109
           KSSGFSRGASMYRGVTRHHQHGRWQARIGRV+GNKDLYLGTFS        Y    D+AA
Sbjct: 377 KSSGFSRGASMYRGVTRHHQHGRWQARIGRVSGNKDLYLGTFSTQEEAAEAY----DVAA 436

Query: 110 IKFRGLNAVSH 121
           IKFRGLNAV++
Sbjct: 437 IKFRGLNAVTN 443

[Close]

BLAST of Carg02727 vs. ExPASy Swiss-Prot
Match: Q1PFE1 (AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana OX=3702 GN=AIL1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.9e-23
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 51  SSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAI 110
           SSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAAI
Sbjct: 316 SSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAY----DIAAI 375

Query: 111 KFRGLNAVSH 121
           KFRGLNAV++
Sbjct: 376 KFRGLNAVTN 381

[Close]

BLAST of Carg02727 vs. ExPASy TrEMBL
Match: A0A314UW05 (AP2-like ethylene-responsive transcription factor AIL1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_17087 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.4e-28
Identity = 79/142 (55.63%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 5   QELRTLLGTELQSIAVSPGIDGREDMKHICGIIVVGGKGSQGRV---------------- 64
           + L TLL +EL S  VSPGI G  DM+ ICGIIV   KG QG+                 
Sbjct: 132 ENLLTLLVSELLSSVVSPGIGGLGDMRPICGIIVAEKKGKQGKEDKLSTYEKELEEMKNM 191

Query: 65  ----------VKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLY 121
                      KSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS      
Sbjct: 192 TRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAA 251

[Close]

BLAST of Carg02727 vs. ExPASy TrEMBL
Match: Q7X6D4 (OSJNBa0014K14.16 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0014K14.16 PE=4 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 74/139 (53.24%), Postives = 82/139 (58.99%), Query Frame = 0


Query: 8   RTLLGTELQSIAVSPGIDGREDMKHICGIIVVGGKGSQGRVVK----------------- 67
           R  + T  Q  ++  GIDG+EDMK ICGII VG K    R  +                 
Sbjct: 267 RKSIDTFGQRTSIYRGIDGQEDMKLICGIIAVGEKAKVARGDRMSNYEKELEEMKHMTRQ 326

Query: 68  ---------SSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIY 121
                    SSGFSRGAS YRGVTRHHQHGRWQARIGRVAGNKD+YLGTFS        Y
Sbjct: 327 EYIAHLRRNSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDIYLGTFSTEEEAAEAY 386

[Close]

BLAST of Carg02727 vs. ExPASy TrEMBL
Match: B9FG04 (AP2/ERF domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_15374 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 72/130 (55.38%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 17  SIAVSPGIDGREDMKHICGIIVVGGKGSQGRVVK-------------------------- 76
           S++   GIDG+EDMK ICGII VG K    R  +                          
Sbjct: 226 SMSTGSGIDGQEDMKLICGIIAVGEKAKVARGDRMSNYEKELEEMKHMTRQEYIAHLRRN 285

Query: 77  SSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAI 121
           SSGFSRGAS YRGVTRHHQHGRWQARIGRVAGNKD+YLGTFS        Y    DIAAI
Sbjct: 286 SSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDIYLGTFSTEEEAAEAY----DIAAI 345

[Close]

BLAST of Carg02727 vs. ExPASy TrEMBL
Match: A0A0D3FXN9 (AP2/ERF domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 71/124 (57.26%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 23  GIDGREDMKHICGIIVVGGKGSQGRVVK--------------------------SSGFSR 82
           GIDG+EDMK ICGII VG K    R  +                          SSGFSR
Sbjct: 111 GIDGQEDMKLICGIIAVGEKAKVARGDRMSNYEKELEEMKHMTRQEYIAHLRRNSSGFSR 170

Query: 83  GASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAIKFRGLN 121
           GAS YRGVTRHHQHGRWQARIGRVAGNKD+YLGTFS        Y    DIAAIKFRGLN
Sbjct: 171 GASKYRGVTRHHQHGRWQARIGRVAGNKDIYLGTFSTEEEAAEAY----DIAAIKFRGLN 230

[Close]

BLAST of Carg02727 vs. ExPASy TrEMBL
Match: A0A0E0H2W1 (AP2/ERF domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 71/124 (57.26%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 23  GIDGREDMKHICGIIVVGGKGSQGRVVK--------------------------SSGFSR 82
           GIDG+EDMK ICGII VG K    R  +                          SSGFSR
Sbjct: 457 GIDGQEDMKLICGIIAVGEKAKVARGDRMSNYEKELEEMKHMTRQEYIAHLRRNSSGFSR 516

Query: 83  GASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAIKFRGLN 121
           GAS YRGVTRHHQHGRWQARIGRVAGNKD+YLGTFS        Y    DIAAIKFRGLN
Sbjct: 517 GASKYRGVTRHHQHGRWQARIGRVAGNKDIYLGTFSTEEEAAEAY----DIAAIKFRGLN 576

[Close]

BLAST of Carg02727 vs. TAIR 10
Match: AT5G57390.1 (AINTEGUMENTA-like 5 )

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-25
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 50  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 109
           KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAA
Sbjct: 295 KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAY----DIAA 354

Query: 110 IKFRGLNAVSH 121
           IKFRGLNAV++
Sbjct: 355 IKFRGLNAVTN 361

[Close]

BLAST of Carg02727 vs. TAIR 10
Match: AT1G51190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-25
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 50  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 109
           KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAA
Sbjct: 282 KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAY----DIAA 341

Query: 110 IKFRGLNAVSH 121
           IKFRGLNAV++
Sbjct: 342 IKFRGLNAVTN 348

[Close]

BLAST of Carg02727 vs. TAIR 10
Match: AT3G20840.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-25
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 50  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 109
           KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAA
Sbjct: 273 KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAY----DIAA 332

Query: 110 IKFRGLNAVSH 121
           IKFRGLNAV++
Sbjct: 333 IKFRGLNAVTN 339

[Close]

BLAST of Carg02727 vs. TAIR 10
Match: AT1G72570.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.9e-24
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 51  SSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAAI 110
           SSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS        Y    DIAAI
Sbjct: 316 SSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAY----DIAAI 375

Query: 111 KFRGLNAVSH 121
           KFRGLNAV++
Sbjct: 376 KFRGLNAVTN 381

[Close]

BLAST of Carg02727 vs. TAIR 10
Match: AT5G17430.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-23
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 50  KSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKLSTLYPIYYLFKDIAA 109
           KSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTF         Y    DIAA
Sbjct: 302 KSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAY----DIAA 361

Query: 110 IKFRGLNAVSH 121
           IKFRGL+AV++
Sbjct: 362 IKFRGLSAVTN 368

The following BLAST results are available for this feature:

BLAST of Carg02727 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035845.1	3.1e-65	100.00	AP2-like ethylene-responsive transcription factor PLT1, partial [Cucurbita argyr...	[more]
PQM40714.1	1.5e-27	55.63	AP2-like ethylene-responsive transcription factor AIL1 [Prunus yedoensis var. nu...	[more]
EEE61288.1	7.1e-25	55.38	hypothetical protein OsJ_15374 [Oryza sativa Japonica Group]	[more]
CAE02944.3	7.1e-25	53.24	OSJNBa0014K14.16 [Oryza sativa Japonica Group]	[more]
GFP95788.1	4.6e-24	54.96	ap2-like ethylene-responsive transcription factor plt2 [Phtheirospermum japonicu...	[more]

BLAST of Carg02727 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PQQ3	6.2e-24	80.28	AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana O...	[more]
Q5YGP8	8.1e-24	80.28	AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana O...	[more]
Q5YGP7	8.1e-24	80.28	AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana O...	[more]
Q84Z02	1.8e-23	77.46	AP2-like ethylene-responsive transcription factor CRL5 OS=Oryza sativa subsp. ja...	[more]
Q1PFE1	6.9e-23	78.57	AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana O...	[more]

BLAST of Carg02727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A314UW05	7.4e-28	55.63	AP2-like ethylene-responsive transcription factor AIL1 OS=Prunus yedoensis var. ...	[more]
Q7X6D4	3.4e-25	53.24	OSJNBa0014K14.16 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0014K...	[more]
B9FG04	3.4e-25	55.38	AP2/ERF domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
A0A0D3FXN9	1.7e-24	57.26	AP2/ERF domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1	[more]
A0A0E0H2W1	1.7e-24	57.26	AP2/ERF domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1	[more]

BLAST of Carg02727 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57390.1	4.4e-25	80.28	AINTEGUMENTA-like 5	[more]
AT1G51190.1	5.8e-25	80.28	Integrase-type DNA-binding superfamily protein	[more]
AT3G20840.1	5.8e-25	80.28	Integrase-type DNA-binding superfamily protein	[more]
AT1G72570.1	4.9e-24	78.57	Integrase-type DNA-binding superfamily protein	[more]
AT5G17430.1	1.4e-23	76.06	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 60..125 e-value: 2.1E-5 score: 33.9
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 60..123 score: 9.808971
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 60..120 e-value: 4.1E-8 score: 35.2
None	No IPR available	PANTHER	PTHR32467	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	coord: 50..118
None	No IPR available	PANTHER	PTHR32467:SF72	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM	coord: 50..118
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 59..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02727-RA	Carg02727-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity