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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATGCCTTCTTGGGTCGTACCCCCAATTCAAAGGCGTCGATAAGAACAGCAAGAAACCCCCCGAAAAGATTGGAGGGTTTTAAAGCAGCTTCCAAATTGAAAGAAAATGGCGAAAGAACGGTAAGAACAGAGACGAATGTCGAAGGGGTATTAGGCGGAGGAGTGAGAGAGGTGAGTGAATGGTAGAATGAGCGAGGAATTTGGCGCCGGAAGCGACGCAATATATATATAGGGATTAAAGGAAGTGGATTGCGCGCGTGGGGGAATCATTATGGCGAAAGGAAGAGATGGTTTGGGAAAGTGGTCCAAGAAAGTTGGGATTTTTGGTATCGGTTTCGGCTTATGAATCCATTATTCCTGTTTATCTTACATACTGGTTTATCCTTAACCTTCCATTCCTTCTATCCCCTATGCTTCCTAAAACTATATTAATTTGCTTCACTTTTCATTCAATCTTTCATTTTTATTCTTCCAACTCAAACCTTTTCTCTTCTTTCCTTCGACATGCGTGTATATATCCACTAATTTAGGGTGTTACACGAACACGAACTCTCCACAATGATATGATATTGTCCATTTTGAATATAAGTTCTCATTGCTTTCCATTGTGCTCCCTAAAATGTCTAGAATATTTCTTGAGTATAAACTCTTTCCGACATCTAACAAAAGAAAAAAAAGAAATTAAAAACCAATAGAAAGAAGGCACGTGGATATGCTCGGCAGTGTGAGAGGGTTCTGTGCTTGATATAATCCATTTTATTAACTACAGCGTTGTAAGCCTACACGGGCAGAGAGAAGAAAACGCTCTCTTTCTCTCTCTTCTCTCTGGCTCTGCTTCTCTTTCCTCACTGATTCTAAAACTGTTCAGGTTAGGTTTTCAAATTCCTTCCTCTATTTGCGCCAATTTGTTTGGATTACATCTTAATTTTTCTGTTTTTAGTGATTACTCCCGAGTAATTCCACTTCGCCTCTGATTTCCTTTTGTCGTTTCTTATATATTTTATATTCGTTAGAAGCCGGGGTTTAATTTCCATGGGATTCTGAGTTCTTCGATCGTGCATAAAGATTCGTCTATCAAAGATATCTATCGTCAGGTTAGGGCTTATGTTCTGTACCTCGTGTTGGTTTCACTGAATACTCCTATTGAACTATGATGTTCAGTTGTTGTATATGAACAGAGTGGAGCTCTGGGTAACTCTTATAGACTTCTTATCTTGTGA mRNA sequence ATGGATGCCTTCTTGGGTCGTACCCCCAATTCAAAGGCGTCGATAAGAACAGCAAGAAACCCCCCGAAAAGATTGGAGGGTTTTAAAGCAGCTTCCAAATTGAAAGAAAATGGCGAAAGAACGAAGCCGGGGTTTAATTTCCATGGGATTCTGAGTTCTTCGATCGTGCATAAAGATTCGTCTATCAAAGATATCTATCGTCAGAGTGGAGCTCTGGGTAACTCTTATAGACTTCTTATCTTGTGA Coding sequence (CDS) ATGGATGCCTTCTTGGGTCGTACCCCCAATTCAAAGGCGTCGATAAGAACAGCAAGAAACCCCCCGAAAAGATTGGAGGGTTTTAAAGCAGCTTCCAAATTGAAAGAAAATGGCGAAAGAACGAAGCCGGGGTTTAATTTCCATGGGATTCTGAGTTCTTCGATCGTGCATAAAGATTCGTCTATCAAAGATATCTATCGTCAGAGTGGAGCTCTGGGTAACTCTTATAGACTTCTTATCTTGTGA Protein sequence MDAFLGRTPNSKASIRTARNPPKRLEGFKAASKLKENGERTKPGFNFHGILSSSIVHKDSSIKDIYRQSGALGNSYRLLIL
Homology
BLAST of Carg02724 vs. NCBI nr
Match: KAG7035848.1 (hypothetical protein SDJN02_02647, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MDAFLGRTPNSKASIRTARNPPKRLEGFKAASKLKENGERTKPGFNFHGILSSSIVHKDS 60
MDAFLGRTPNSKASIRTARNPPKRLEGFKAASKLKENGERTKPGFNFHGILSSSIVHKDS
Sbjct: 1 MDAFLGRTPNSKASIRTARNPPKRLEGFKAASKLKENGERTKPGFNFHGILSSSIVHKDS 60
Query: 61 SIKDIYRQSGALGNSYRLLIL 82
SIKDIYRQSGALGNSYRLLIL
Sbjct: 61 SIKDIYRQSGALGNSYRLLIL 81
BLAST of Carg02724 vs. NCBI nr
Match: KAG6605904.1 (hypothetical protein SDJN03_03221, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
Query: 42 KPGFNFHGILSSSIVHKDSSIKDIYRQ 69
KPGFNFHGILSSSIVHKDSSI+DIYRQ
Sbjct: 35 KPGFNFHGILSSSIVHKDSSIRDIYRQ 61
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAG7035848.1 | 1.5e-36 | 100.00 | hypothetical protein SDJN02_02647, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6605904.1 | 3.9e-05 | 96.30 | hypothetical protein SDJN03_03221, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..26 |
Relationships
The following mRNA feature(s) are a part of this gene:
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