Carg02724 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02724
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 7187894 .. 7189116 (-)
RNA-Seq Expression	Carg02724
Synteny	Carg02724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCCTTCTTGGGTCGTACCCCCAATTCAAAGGCGTCGATAAGAACAGCAAGAAACCCCCCGAAAAGATTGGAGGGTTTTAAAGCAGCTTCCAAATTGAAAGAAAATGGCGAAAGAACGGTAAGAACAGAGACGAATGTCGAAGGGGTATTAGGCGGAGGAGTGAGAGAGGTGAGTGAATGGTAGAATGAGCGAGGAATTTGGCGCCGGAAGCGACGCAATATATATATAGGGATTAAAGGAAGTGGATTGCGCGCGTGGGGGAATCATTATGGCGAAAGGAAGAGATGGTTTGGGAAAGTGGTCCAAGAAAGTTGGGATTTTTGGTATCGGTTTCGGCTTATGAATCCATTATTCCTGTTTATCTTACATACTGGTTTATCCTTAACCTTCCATTCCTTCTATCCCCTATGCTTCCTAAAACTATATTAATTTGCTTCACTTTTCATTCAATCTTTCATTTTTATTCTTCCAACTCAAACCTTTTCTCTTCTTTCCTTCGACATGCGTGTATATATCCACTAATTTAGGGTGTTACACGAACACGAACTCTCCACAATGATATGATATTGTCCATTTTGAATATAAGTTCTCATTGCTTTCCATTGTGCTCCCTAAAATGTCTAGAATATTTCTTGAGTATAAACTCTTTCCGACATCTAACAAAAGAAAAAAAAGAAATTAAAAACCAATAGAAAGAAGGCACGTGGATATGCTCGGCAGTGTGAGAGGGTTCTGTGCTTGATATAATCCATTTTATTAACTACAGCGTTGTAAGCCTACACGGGCAGAGAGAAGAAAACGCTCTCTTTCTCTCTCTTCTCTCTGGCTCTGCTTCTCTTTCCTCACTGATTCTAAAACTGTTCAGGTTAGGTTTTCAAATTCCTTCCTCTATTTGCGCCAATTTGTTTGGATTACATCTTAATTTTTCTGTTTTTAGTGATTACTCCCGAGTAATTCCACTTCGCCTCTGATTTCCTTTTGTCGTTTCTTATATATTTTATATTCGTTAGAAGCCGGGGTTTAATTTCCATGGGATTCTGAGTTCTTCGATCGTGCATAAAGATTCGTCTATCAAAGATATCTATCGTCAGGTTAGGGCTTATGTTCTGTACCTCGTGTTGGTTTCACTGAATACTCCTATTGAACTATGATGTTCAGTTGTTGTATATGAACAGAGTGGAGCTCTGGGTAACTCTTATAGACTTCTTATCTTGTGA

mRNA sequence

ATGGATGCCTTCTTGGGTCGTACCCCCAATTCAAAGGCGTCGATAAGAACAGCAAGAAACCCCCCGAAAAGATTGGAGGGTTTTAAAGCAGCTTCCAAATTGAAAGAAAATGGCGAAAGAACGAAGCCGGGGTTTAATTTCCATGGGATTCTGAGTTCTTCGATCGTGCATAAAGATTCGTCTATCAAAGATATCTATCGTCAGAGTGGAGCTCTGGGTAACTCTTATAGACTTCTTATCTTGTGA

Coding sequence (CDS)

ATGGATGCCTTCTTGGGTCGTACCCCCAATTCAAAGGCGTCGATAAGAACAGCAAGAAACCCCCCGAAAAGATTGGAGGGTTTTAAAGCAGCTTCCAAATTGAAAGAAAATGGCGAAAGAACGAAGCCGGGGTTTAATTTCCATGGGATTCTGAGTTCTTCGATCGTGCATAAAGATTCGTCTATCAAAGATATCTATCGTCAGAGTGGAGCTCTGGGTAACTCTTATAGACTTCTTATCTTGTGA

Protein sequence

MDAFLGRTPNSKASIRTARNPPKRLEGFKAASKLKENGERTKPGFNFHGILSSSIVHKDSSIKDIYRQSGALGNSYRLLIL

Homology

[Close]

BLAST of Carg02724 vs. NCBI nr
Match: KAG7035848.1 (hypothetical protein SDJN02_02647, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MDAFLGRTPNSKASIRTARNPPKRLEGFKAASKLKENGERTKPGFNFHGILSSSIVHKDS 60
          MDAFLGRTPNSKASIRTARNPPKRLEGFKAASKLKENGERTKPGFNFHGILSSSIVHKDS
Sbjct: 1  MDAFLGRTPNSKASIRTARNPPKRLEGFKAASKLKENGERTKPGFNFHGILSSSIVHKDS 60

Query: 61 SIKDIYRQSGALGNSYRLLIL 82
          SIKDIYRQSGALGNSYRLLIL
Sbjct: 61 SIKDIYRQSGALGNSYRLLIL 81

[Close]

BLAST of Carg02724 vs. NCBI nr
Match: KAG6605904.1 (hypothetical protein SDJN03_03221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 42 KPGFNFHGILSSSIVHKDSSIKDIYRQ 69
          KPGFNFHGILSSSIVHKDSSI+DIYRQ
Sbjct: 35 KPGFNFHGILSSSIVHKDSSIRDIYRQ 61

The following BLAST results are available for this feature:

BLAST of Carg02724 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035848.1	1.5e-36	100.00	hypothetical protein SDJN02_02647, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6605904.1	3.9e-05	96.30	hypothetical protein SDJN03_03221, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg02724 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02724 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02724 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02724-RA	Carg02724-RA	mRNA