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Carg02709 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGGAGCTTTCTTCCTTGTGGTTACAACACCGGTGGTGGACTCATCGCCGGTTACCAATATGAGTCTCACAACTGGTGGACATTTGGTTCTGCCCACCAAATCTAAGCTTAAGAATCATTTGGCCGTATCATCATCGGTGAGTTCGTTCGTGAATTCCGGCGGCCAGTGGCGGCTCTCCGCCGTTGGTGGCCACCGGAGGAATCTACGGAGGAAACGCAGGCTTGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGGTATGAACAGAACATGATATGAGTGTTCTTGGATGGAAAATTTGTTGATGTTTTGATTTCCACGTGCAGCAAATACAGAATTACTTCACATTCAAAGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAATCCTACCCAATACAGATGGTTTTATGAGTAACTACTGAACCCTTTCACCTCACTTTCCTTAACTTCCTCGAAATCAATATAATCCACAATTTCTCTGTTTCTACCTCAACAGTTTTGTTGTGAATCACAAGCCTGGAGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGTATTATTACGACCTCCTCGGCTCAGATCAAAAGTTTAAAGGTTCGAATCTTTTATGTCTAAACAGAGATGATTATGATTAACAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACGAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAGAAGATTACAATTTCTTTGGTTGGAATCACTTTAAGAACACATATTGACAGTGATTTTCTGATATTGCGTAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTAGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGATGAGTAGAGGTTTTAGAAGATTGGCAGACTAGGAGCTGTGGTTTCTTTTCCTGTGGTTTCATTCT ATGGTGGGAGCTTTCTTCCTTGTGGTTACAACACCGGTGGTGGACTCATCGCCGGTTACCAATATGAGTCTCACAACTGGTGGACATTTGGTTCTGCCCACCAAATCTAAGCTTAAGAATCATTTGGCCGTATCATCATCGGTGAGTTCGTTCGTGAATTCCGGCGGCCAGTGGCGGCTCTCCGCCGTTGGTGGCCACCGGAGGAATCTACGGAGGAAACGCAGGCTTGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTACTTCACATTCAAAGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAATCCTACCCAATACAGATGGTTTTATGATTTTGTTGTGAATCACAAGCCTGGAGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACGAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTAGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGATGAGTAGAGGTTTTAGAAGATTGGCAGACTAGGAGCTGTGGTTTCTTTTCCTGTGGTTTCATTCT ATGGTGGGAGCTTTCTTCCTTGTGGTTACAACACCGGTGGTGGACTCATCGCCGGTTACCAATATGAGTCTCACAACTGGTGGACATTTGGTTCTGCCCACCAAATCTAAGCTTAAGAATCATTTGGCCGTATCATCATCGGTGAGTTCGTTCGTGAATTCCGGCGGCCAGTGGCGGCTCTCCGCCGTTGGTGGCCACCGGAGGAATCTACGGAGGAAACGCAGGCTTGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTACTTCACATTCAAAGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAATCCTACCCAATACAGATGGTTTTATGATTTTGTTGTGAATCACAAGCCTGGAGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACGAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTAGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGATGAGTAG MVGAFFLVVTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRLSAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISDENLELMRERLMETVIWPSDE Homology
BLAST of Carg02709 vs. NCBI nr
Match: KAG7035863.1 (Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 401.4 bits (1030), Expect = 4.7e-108 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of Carg02709 vs. NCBI nr
Match: XP_023534118.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-107 Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0
BLAST of Carg02709 vs. NCBI nr
Match: XP_022958398.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >XP_022995145.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima] >KAG6605915.1 Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 398.7 bits (1023), Expect = 3.0e-107 Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0
BLAST of Carg02709 vs. NCBI nr
Match: XP_023512052.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 322.0 bits (824), Expect = 3.6e-84 Identity = 169/214 (78.97%), Postives = 183/214 (85.51%), Query Frame = 0
BLAST of Carg02709 vs. NCBI nr
Match: XP_022944576.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]) HSP 1 Score: 320.9 bits (821), Expect = 8.0e-84 Identity = 162/192 (84.38%), Postives = 173/192 (90.10%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51 Identity = 111/203 (54.68%), Postives = 143/203 (70.44%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.8e-07 Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07 Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06 Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy TrEMBL
Match: A0A6J1K3B1 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111490774 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 1.5e-107 Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy TrEMBL
Match: A0A6J1H2Z6 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459633 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 1.5e-107 Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy TrEMBL
Match: A0A6J1FUS7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448989 PE=4 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 3.9e-84 Identity = 162/192 (84.38%), Postives = 173/192 (90.10%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy TrEMBL
Match: A0A0A0KX19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 2.5e-83 Identity = 169/214 (78.97%), Postives = 181/214 (84.58%), Query Frame = 0
BLAST of Carg02709 vs. ExPASy TrEMBL
Match: A0A5A7TJ10 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00620 PE=4 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 9.6e-83 Identity = 169/214 (78.97%), Postives = 180/214 (84.11%), Query Frame = 0
BLAST of Carg02709 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein ) HSP 1 Score: 204.1 bits (518), Expect = 1.0e-52 Identity = 111/203 (54.68%), Postives = 143/203 (70.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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