Carg02707 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02707
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclin-dependent protein kinase inhibitor SMR13-like
Location	Carg_Chr02: 7265045 .. 7265410 (+)
RNA-Seq Expression	Carg02707
Synteny	Carg02707

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTTCAGGAGGTAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCGCCGCCACAGAACGACGTCGTTCAATTTCCTGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAAAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCAGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

mRNA sequence

ATGGCTCCTTCAGGAGGTAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCGCCGCCACAGAACGACGTCGTTCAATTTCCTGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAAAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCAGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

Coding sequence (CDS)

ATGGCTCCTTCAGGAGGTAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCGCCGCCACAGAACGACGTCGTTCAATTTCCTGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAAAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCAGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

Protein sequence

MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGGGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV

Homology

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BLAST of Carg02707 vs. NCBI nr
Match: KAG7035865.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.0e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG 60
           MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG
Sbjct: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG 60

Query: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 120
           GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS
Sbjct: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of Carg02707 vs. NCBI nr
Match: KAG6605917.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.2 bits (596), Expect = 6.0e-58
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG 60
           MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDD   GG
Sbjct: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDD---GG 60

Query: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 120
           GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS
Sbjct: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 118

Query: 121 V 122
           V
Sbjct: 121 V 118

[Close]

BLAST of Carg02707 vs. NCBI nr
Match: XP_022958378.1 (cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita moschata])

HSP 1 Score: 214.9 bits (546), Expect = 3.8e-52
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG 60
           MAPSG KMATRPRRNIRTSK+NKKIKKTTTKK   PQNQIPPPQNDVVQFPDDD     G
Sbjct: 1   MAPSGAKMATRPRRNIRTSKVNKKIKKTTTKK---PQNQIPPPQNDVVQFPDDD-----G 60

Query: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 120
           GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS
Sbjct: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 113

Query: 121 V 122
           V
Sbjct: 121 V 113

[Close]

BLAST of Carg02707 vs. NCBI nr
Match: XP_023532997.1 (cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 108/114 (94.74%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGGGGGYSTP 67
           MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD      GGGYSTP
Sbjct: 1   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDD------GGGYSTP 60

Query: 68  KAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 122
           KAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV
Sbjct: 61  KAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 108

[Close]

BLAST of Carg02707 vs. NCBI nr
Match: XP_022996084.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGGGGGYSTP 67
           MATRPRRNI  SKLNKK+KKTTTKKPQQPQNQIPPPQNDVVQFPDDD D    GGGYSTP
Sbjct: 1   MATRPRRNIPNSKLNKKMKKTTTKKPQQPQNQIPPPQNDVVQFPDDDFDNDDVGGGYSTP 60

Query: 68  KAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 122
           KAERFRIPEILTCPPGPKKQRP+SDCSFRRSPIAFFAPPELELFFFI+RPDISV
Sbjct: 61  KAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFFFISRPDISV 114

[Close]

BLAST of Carg02707 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-11
Identity = 45/106 (42.45%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGG-GGGGGYST 67
           MA++  R  + ++  KK+ ++  KK     N I    N +   P           GG  T
Sbjct: 1   MASKKAR--KPNRAEKKLTRSCFKKQVPQHNNI--NTNTIYSVPSPSPAAVLTSPGGCCT 60

Query: 68  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 113
           PKA++ RIPE+LTCPP PKKQR   +C  RR  I FFAPPE+ELFF
Sbjct: 61  PKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Carg02707 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 19  SKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGGGGGYSTPK---------- 78
           SK  K +++TTT++ ++   + P P   +                 +TP           
Sbjct: 3   SKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCT 62

Query: 79  AERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIA 116
            E+ RIPE+LTCPP PKKQ+   +C+ RR  IAFFAPP++ELFF  A
Sbjct: 63  PEKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFVFA 109

[Close]

BLAST of Carg02707 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 65  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 113
           +TP A+  RIP ++ CPP PKK++     S+   P  FF+PP+LE  F
Sbjct: 56  TTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREFFSPPDLETVF 101

[Close]

BLAST of Carg02707 vs. ExPASy Swiss-Prot
Match: Q9SAD3 (Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 GN=SMR8 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 65  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 113
           +TP A   RIP +  CP  PKK++P   CS+      +F+PP+LE  F
Sbjct: 57  TTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Carg02707 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-04
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 65  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIA--FFAPP-ELELFFFIAR 117
           +TP A+  +IPE+L CPP P+K+RP   C   RS +   FF PP +LE  F   R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKC---RSNVVREFFTPPSDLETVFLRRR 112

[Close]

BLAST of Carg02707 vs. ExPASy TrEMBL
Match: A0A6J1H2X7 (cyclin-dependent protein kinase inhibitor SMR13-like OS=Cucurbita moschata OX=3662 GN=LOC111459621 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG 60
           MAPSG KMATRPRRNIRTSK+NKKIKKTTTKK   PQNQIPPPQNDVVQFPDDD     G
Sbjct: 1   MAPSGAKMATRPRRNIRTSKVNKKIKKTTTKK---PQNQIPPPQNDVVQFPDDD-----G 60

Query: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 120
           GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS
Sbjct: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 113

Query: 121 V 122
           V
Sbjct: 121 V 113

[Close]

BLAST of Carg02707 vs. ExPASy TrEMBL
Match: A0A6J1K7R4 (cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 GN=LOC111491400 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.9e-51
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGGGGGYSTP 67
           MATRPRRNI  SKLNKK+KKTTTKKPQQPQNQIPPPQNDVVQFPDDD D    GGGYSTP
Sbjct: 1   MATRPRRNIPNSKLNKKMKKTTTKKPQQPQNQIPPPQNDVVQFPDDDFDNDDVGGGYSTP 60

Query: 68  KAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 122
           KAERFRIPEILTCPPGPKKQRP+SDCSFRRSPIAFFAPPELELFFFI+RPDISV
Sbjct: 61  KAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFFFISRPDISV 114

[Close]

BLAST of Carg02707 vs. ExPASy TrEMBL
Match: A0A6J1D3Z6 (cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3673 GN=LOC111017372 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.6e-32
Identity = 83/121 (68.60%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG 60
           MAPSGG+MA R R N ++ KL KK+KK  TKK QQ +   P  +NDVVQ  +DD D    
Sbjct: 1   MAPSGGRMAARTRGNSQSLKL-KKMKK--TKKQQQQKLPAPATENDVVQCSNDDID---- 60

Query: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 120
            GG STP+AERFRIPEI+TCPP PKKQRP+SDCSFRRSPIAFFAPPELELFFF A PDI 
Sbjct: 61  -GGCSTPRAERFRIPEIVTCPPAPKKQRPVSDCSFRRSPIAFFAPPELELFFFFALPDIP 113

Query: 121 V 122
           V
Sbjct: 121 V 113

[Close]

BLAST of Carg02707 vs. ExPASy TrEMBL
Match: A0A6J1JET4 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=LOC111484378 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 86/125 (68.80%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQ--NQIPPP-QNDVVQFPDDDDDG 60
           MAPSGGKMATR R N+   KLNKKIKKT  ++ QQ Q   QIP    ND V F DD  D 
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAVIPNDAVHFTDDCSD- 60

Query: 61  GGGGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF-FIAR 120
               GG STPKAERFRIPEILTCPP PKK RP SDCS RRSPIAFFAPPELELFF  +  
Sbjct: 61  --IDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPV 120

Query: 121 PDISV 122
           PDISV
Sbjct: 121 PDISV 122

[Close]

BLAST of Carg02707 vs. ExPASy TrEMBL
Match: A0A0A0L0Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 83/126 (65.87%), Postives = 93/126 (73.81%), Query Frame = 0


Query: 1   MAPSGGKMATR-PRRNIRTSKLNKKIKKTTTKK--PQQPQNQIPPPQNDVVQFPDDDDDG 60
           MAPSG +MATR  RR +   KL KKIKKTT KK  PQ+ +  +P  QND+V+F D+  D 
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSD- 60

Query: 61  GGGGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIAR- 120
               GG STPKAER RIPEILTCPP PKK R +SDCS RRSPIAFFAPPELELFFF+A  
Sbjct: 61  ----GGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALP 120

Query: 121 -PDISV 122
            PDISV
Sbjct: 121 VPDISV 121

[Close]

BLAST of Carg02707 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-12
Identity = 45/106 (42.45%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGG-GGGGGYST 67
           MA++  R  + ++  KK+ ++  KK     N I    N +   P           GG  T
Sbjct: 1   MASKKAR--KPNRAEKKLTRSCFKKQVPQHNNI--NTNTIYSVPSPSPAAVLTSPGGCCT 60

Query: 68  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 113
           PKA++ RIPE+LTCPP PKKQR   +C  RR  I FFAPPE+ELFF
Sbjct: 61  PKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Carg02707 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 19  SKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGGGGGYSTPK---------- 78
           SK  K +++TTT++ ++   + P P   +                 +TP           
Sbjct: 3   SKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCT 62

Query: 79  AERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIA 116
            E+ RIPE+LTCPP PKKQ+   +C+ RR  IAFFAPP++ELFF  A
Sbjct: 63  PEKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFVFA 109

[Close]

BLAST of Carg02707 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 65  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 113
           +TP A+  RIP ++ CPP PKK++     S+   P  FF+PP+LE  F
Sbjct: 56  TTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREFFSPPDLETVF 101

[Close]

BLAST of Carg02707 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 65  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 113
           +TP A   RIP +  CP  PKK++P   CS+      +F+PP+LE  F
Sbjct: 57  TTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Carg02707 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 65  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIA--FFAPP-ELELFFFIAR 117
           +TP A+  +IPE+L CPP P+K+RP   C   RS +   FF PP +LE  F   R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKC---RSNVVREFFTPPSDLETVFLRRR 112

The following BLAST results are available for this feature:

BLAST of Carg02707 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035865.1	2.0e-61	100.00	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
KAG6605917.1	6.0e-58	97.52	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
XP_022958378.1	3.8e-52	91.74	cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita moschata]	[more]
XP_023532997.1	1.1e-51	94.74	cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita pepo subsp. pepo...	[more]
XP_022996084.1	1.2e-50	91.23	cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita maxima]	[more]

BLAST of Carg02707 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IWB3	3.3e-11	42.45	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q3ECS5	1.4e-09	36.45	Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	1.4e-04	43.75	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SAD3	1.8e-04	41.67	Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q29Q81	3.0e-04	45.45	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg02707 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2X7	1.8e-52	91.74	cyclin-dependent protein kinase inhibitor SMR13-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1K7R4	5.9e-51	91.23	cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1D3Z6	3.6e-32	68.60	cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3...	[more]
A0A6J1JET4	2.0e-30	68.80	cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L0Q1	2.0e-30	65.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1	[more]

BLAST of Carg02707 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20898.1	2.4e-12	42.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51355.1	1.0e-10	36.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60783.1	9.7e-06	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10690.1	1.3e-05	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G40460.1	2.2e-05	45.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..30
None	No IPR available	PANTHER	PTHR33142:SF8	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 12..116
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 12..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02707-RA	Carg02707-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus