Carg02706 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02706
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit
Location	Carg_Chr02: 7268882 .. 7272599 (+)
RNA-Seq Expression	Carg02706
Synteny	Carg02706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCGCTCTAATTAACAGTGCTTTAATAAACTATGAGAATCGCTGAAGAACTTGATTGACTCTTCAATTTCTCTTCATCCCTTTCTGTTTTTCTTTATCTCACAGATTCCTACCGTCTTCTTCTTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGGTGAGTTCCTCTCTTTCCTCTAACTTCATTTTGCGAGATTCTGGTTCCCTTCTCTCTTCTTTTCGATACCTAAAATTACTCTAGGGTTTTCTTAATTCGGTTCTTTTCCATCTCTTCCCTTTGGTTTTTGTTTATGTTCGAGTATTGTTCTCGTTGCATGGAATTGGGCCAGCTTTGCTTTCTGGATTCATGCGACTAGGATTTGGAAATTTGGATCACTAGAGTTCACTTGGTTGGTTTTCTTTGTTTAGAGAATAGAGTGGAATTAGGATCCCGATGGGAATTTAGAAGTTATGAGTTGGGGCGATTTTTGCTCATGTATTTTCAAAAATGAACTCGCGCCGTCGTATTTTGTTGTTTCTGCTATCTATCCCACTTTTTTTTAGCATTGGGTTCTGTTTATTGTCTGCATGTGGGGATTATGGTTCGCGCAATCCTGAATTGCGGAATTCGGATTGTTTGAGTCAACTTGCGGCGCAGTCCTGAAAGTTGTTTTTCTGTTTTCTTGTTTAATTTAGATGCCGTGCAAATTAGGTTGGAATGTCAGTCGTCTAGAAAACGAGCTGAATATTGAAGTGAACGTTATCTATATAACTCTTTTAGTTACCCCCTGCCCTTGCATGTGGATCACTGGTATGCCCGGCTTAAATGTCAAAGAGAACTTATGTAGAGAGGGGAGAAGATTTTAATTTCAGATACTGAATTATGATTTGATAATTGTCTGGAGCGTTTATGGAGGGTTCATCAATATTATCCTGCAATTGATCTCCACTCAACATTACAGGAATTGGTTTATGTTTTGGATTAAAGATTATGGATGATCTTGGCTTTCTGTTTTTGAGTTTGTTAGATATGCTACACTTGCATCTCTTCAAAATTAAAAGTTTAAGGGTTCCAAGATGTGATTTAGCTGACGTAAATCGAGCATTCACGATTCCAAAATTTTTCAAGCACAAAATAGAAACTTATTTGGTTTCTGTCTTCCGAATCATAGAACCCAACAATTGATGTTAAGTTACGAGCTTAGCTGGGAAGGCCTGAAGATATTAAAGGTGTAGAGCATTTTGCTTTCGTAAGGTCATAGGCTTCATTCAAAAGAATAATGAGCAATGCTCTGTACAGGGATTGGATTAAGTTAAAGCATGCTCTGGGGAAAGTTTCTTAGGTTTTTAAACGAACGATGCTTCCTTTTTCCCCTTTTCCTTTTAACGTCTTCTTTTCAATTCTTTTATCACAGGGTGACGGCTGGTTCTCTGTTTATCCAACATTGGTTTTGCATATTATGTGAATTAACGTATATATATTTGTTTAGAAGGTATGCAGTCAAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCATCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGACCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGACACCACGAAAGAAACGCAAGGTATGGCCCTCAACTAGGATAATTTAGCCTTATTGGATTGTTAACGAACATGTTATTATCAAATTCAGCTGCAAGTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGTAAGCTCCTTCCTATAGTCTTGTTGATTTCCTCCTTACTTTAGAGACATCCTTCTTGCTCTCGGAATCCAGTTTTTGATTATCGAACAACATTGGTTCTTTGAAACGCATCAGATTTGAGATGCTTTTGAATTTTGTGGAATTACTAGTAGTTGTTGAATCTTTTTCAGGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGTATGTAGGTTAAAATTATAAAGATCAGGCGATGATATGAATATGCATATATATGTACATCTTACTGGTAATTTTTGCACCATATACACTATTTTTTATCTATATATATATATATATATATATATATATATATAGCTATATATATATGCTAGCCCTGGGTAATTTTGATGGCACTTTTCCTTTCTGCCTCCTCCACTTTTATGTTTTTTCTTTTGCTTTTACCTTTTCAATTATCCAGGAACTTCATTATGTTCCTTGTCCAGATTTTCACTTTCTCAAACTATCATAAGTAAAATAACATATGAGTATCTGGTGAACGCGAACTAATTGAAATTTTCCAGTTTTTTGGAAAACATTCTAGAGTGATTATGCCTGTAAGTTTGCCCCTGACAAGTATTTCATATTGTAGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGGTACGATTGCTATTCAGAATTCAGATCGTTTTCTTTGATGTACTATGGCTTGTCTCTTATATATGTTTTAGGTATCTGGGAATCTATAACGACTTTCTTAATTGTACTTTATTTTTCTTGAAGTTCATTCTTCCCTATGCTGCAAATTTGATTATAAATATTCAAAGGAGAGAAGTAACATATATAGACTGGAGGTCAACGGAAGGTATACCATAAATGGTATCCGTATATACAGCTGATTCGGATTCAAAGCTTTTAGTTTTTGAACTCGGAGCCTTTGTTACATTTCATGTTGAGTGATGTGGTGACCGTGTATGGTCGACTCACTAATTTAATTTGAATTCGACTGAGGCAAAGCCAGGTCTTTCAAAATTTCACGATTTCTTTTTTGTTGTATGTAGATCTTAATAGTTAGTTCTTTTTTTATTTCACGATTAGTTTTTGAATGCTCTATACTGGCCCGGGTTAGATTTCAAAAATCAAATGTCATTGAGGGTTGGCTGGTTGTTAGTTCTGTATGTTTTCTGAAGTATCTCTAATATTTAGCTTGTGTGTAATGTTGATCAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGA

mRNA sequence

TTTGCGCTCTAATTAACAGTGCTTTAATAAACTATGAGAATCGCTGAAGAACTTGATTGACTCTTCAATTTCTCTTCATCCCTTTCTGTTTTTCTTTATCTCACAGATTCCTACCGTCTTCTTCTTGAATCCAGCGCTTCGGATTTCCTCAATTTTCTCTCCAGAAGGTATGCAGTCAAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCATCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGACCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGACACCACGAAAGAAACGCAAGCTGCAAGTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGA

Coding sequence (CDS)

ATGCAGTCAAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCATCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGACCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGACACCACGAAAGAAACGCAAGCTGCAAGTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGA

Protein sequence

MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASESNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK

Homology

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BLAST of Carg02706 vs. NCBI nr
Match: XP_022958505.1 (nuclear transcription factor Y subunit A-1-like [Cucurbita moschata] >XP_022958506.1 nuclear transcription factor Y subunit A-1-like [Cucurbita moschata] >KAG7035866.1 Nuclear transcription factor Y subunit A-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 646.4 bits (1666), Expect = 1.4e-181
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE
Sbjct: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60

Query: 61  SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 120
           SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG
Sbjct: 61  SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 120

Query: 121 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 180
           HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG
Sbjct: 121 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 180

Query: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 240
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 240

Query: 241 ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS 300
           ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS
Sbjct: 241 ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS 300

Query: 301 FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 301 FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 340

[Close]

BLAST of Carg02706 vs. NCBI nr
Match: KAG6605918.1 (Nuclear transcription factor Y subunit A-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 646.4 bits (1666), Expect = 1.4e-181
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE
Sbjct: 100 MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 159

Query: 61  SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 120
           SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG
Sbjct: 160 SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 219

Query: 121 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 180
           HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG
Sbjct: 220 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 279

Query: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 240
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK
Sbjct: 280 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 339

Query: 241 ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS 300
           ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS
Sbjct: 340 ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS 399

Query: 301 FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 400 FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 439

[Close]

BLAST of Carg02706 vs. NCBI nr
Match: XP_023533872.1 (nuclear transcription factor Y subunit A-1-like [Cucurbita pepo subsp. pepo] >XP_023533873.1 nuclear transcription factor Y subunit A-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 634.8 bits (1636), Expect = 4.3e-178
Identity = 339/342 (99.12%), Postives = 339/342 (99.12%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           MQ KSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE
Sbjct: 1   MQFKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60

Query: 61  SND-QSMSNADLNE-DDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLEL 120
           SND QSMSNADLNE DDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLEL
Sbjct: 61  SNDGQSMSNADLNEDDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLEL 120

Query: 121 VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY 180
           VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY
Sbjct: 121 VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY 180

Query: 181 QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK 240
           QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK
Sbjct: 181 QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK 240

Query: 241 SKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY 300
           SKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY
Sbjct: 241 SKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY 300

Query: 301 SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 301 SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 342

[Close]

BLAST of Carg02706 vs. NCBI nr
Match: XP_022995109.1 (nuclear transcription factor Y subunit A-1-like [Cucurbita maxima] >XP_022995110.1 nuclear transcription factor Y subunit A-1-like [Cucurbita maxima])

HSP 1 Score: 629.8 bits (1623), Expect = 1.4e-176
Identity = 336/342 (98.25%), Postives = 337/342 (98.54%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPI PSATGGNVSNSPSLECTNGASE
Sbjct: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPIYPSATGGNVSNSPSLECTNGASE 60

Query: 61  SND-QSMSNADLNE-DDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLEL 120
           SND QSMSNADLNE DDDDDTTKETQAASYGQ QHNNQHAVSTAPRVHGGCITQPPQLEL
Sbjct: 61  SNDGQSMSNADLNEDDDDDDTTKETQAASYGQSQHNNQHAVSTAPRVHGGCITQPPQLEL 120

Query: 121 VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY 180
           VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY
Sbjct: 121 VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY 180

Query: 181 QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK 240
           QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK
Sbjct: 181 QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK 240

Query: 241 SKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY 300
           +KESGSGQAISSSSSGSEAVPGAL ETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY
Sbjct: 241 NKESGSGQAISSSSSGSEAVPGALTETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY 300

Query: 301 SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 301 SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 342

[Close]

BLAST of Carg02706 vs. NCBI nr
Match: XP_022148721.1 (nuclear transcription factor Y subunit A-1-like [Momordica charantia] >XP_022148722.1 nuclear transcription factor Y subunit A-1-like [Momordica charantia] >XP_022148723.1 nuclear transcription factor Y subunit A-1-like [Momordica charantia] >XP_022148724.1 nuclear transcription factor Y subunit A-1-like [Momordica charantia] >XP_022148725.1 nuclear transcription factor Y subunit A-1-like [Momordica charantia] >XP_022148726.1 nuclear transcription factor Y subunit A-1-like [Momordica charantia])

HSP 1 Score: 562.0 bits (1447), Expect = 3.5e-156
Identity = 300/344 (87.21%), Postives = 314/344 (91.28%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           M SKSKSVNQ+ESEPPNMQQTGSYSEPWWRSIGYNPISP A GGNVSNS SLECTNGASE
Sbjct: 1   MHSKSKSVNQLESEPPNMQQTGSYSEPWWRSIGYNPISPPAAGGNVSNSTSLECTNGASE 60

Query: 61  SND-QSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELV 120
           SN+ QSMSN DLNE+DDDD TK++QAASYGQ QHN Q AVSTAP VHGGCITQPPQLELV
Sbjct: 61  SNEGQSMSNDDLNEEDDDDNTKDSQAASYGQEQHNTQRAVSTAPTVHGGCITQPPQLELV 120

Query: 121 GHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQ 180
           GH+IACASN YQDPYY GLM AYGHQP+GYPPF+GMPHARMALPLEV QEPVFVNAKQYQ
Sbjct: 121 GHNIACASNPYQDPYYPGLMTAYGHQPLGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQ 180

Query: 181 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKS 240
           GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKK+E  S  STMK 
Sbjct: 181 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKSEVNSSCSTMKD 240

Query: 241 KESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFH 300
           KE GSGQAISS   SSSGSEAVP  LAETWNSSN QQEAR QLHE+YEAR+YVNG+SHF 
Sbjct: 241 KECGSGQAISSHSASSSGSEAVPRVLAETWNSSNGQQEARTQLHETYEARTYVNGSSHFQ 300

Query: 301 NYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           NYSSFQASSYAL +GERGEDGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 301 NYSSFQASSYALRTGERGEDGDCSGQQRGSISENQAAQRRLAIK 344

[Close]

BLAST of Carg02706 vs. ExPASy Swiss-Prot
Match: Q9LXV5 (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.5e-53
Identity = 141/279 (50.54%), Postives = 184/279 (65.95%), Query Frame = 0


Query: 1   MQSKSKSVNQVE-SEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGAS 60
           MQSK    N+ E +    +QQ   Y+EPWW++  +  +  +   G  SNS SL+C NG S
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNG-S 60

Query: 61  ESND-QSMSNADLNEDDDDDTTKETQAASYGQ-----GQHNNQHAVSTAPRVHGGCITQP 120
           ESND  S S       ++D T K++QAA+  +     G   N  A+S    +H   + QP
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIR-NMHDQPLVQP 120

Query: 121 PQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFV 180
           P  ELVGH IAC  N YQDPYY GLM AYGHQ +G+ P++GMP  R ALPL++AQEPV+V
Sbjct: 121 P--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYV 180

Query: 181 NAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS- 240
           NAKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++ 
Sbjct: 181 NAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAG 240

Query: 241 LSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNS 272
             +  + +E GS    +++SSGSE V     ET NSS +
Sbjct: 241 EDAGGRDRERGS----ATNSSGSEQVETDSNETLNSSGA 271

[Close]

BLAST of Carg02706 vs. ExPASy Swiss-Prot
Match: Q945M9 (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NFYA9 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.9e-49
Identity = 157/344 (45.64%), Postives = 195/344 (56.69%), Query Frame = 0


Query: 1   MQSKSKS-VNQVESEPPNMQQTGSYS-EPWWRSIGYNPISPSATGGNVSNSPSLECTNGA 60
           M SKS S  N+V+SE      +   S  PW R+      + S   G+ S S S+     A
Sbjct: 6   MHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAAAACNANSSVEAGDKS-SKSIAL---A 65

Query: 61  SESN-DQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLE 120
            ESN  +S SN D   + +   T   Q+A  G     NQ +      +H G    PP  +
Sbjct: 66  LESNGSKSPSNRDNTVNKESQVTTSPQSA--GDYSDKNQES------LHHGITQPPPHPQ 125

Query: 121 LVGHSIACA-SNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAK 180
           LVGH++  A SN YQDPYYAG+M AYGH P+G+ P+ GMPH+RM LP E+AQEPVFVNAK
Sbjct: 126 LVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAK 185

Query: 181 QYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSST 240
           QYQ ILRRRQARAKAE+E KLIK RKPYLHESRHQHAMRR RGTGGRFAKK   +  +S 
Sbjct: 186 QYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRFAKKTNTE--ASK 245

Query: 241 MKSKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFH 300
            K++E  +G    S SS              S++ Q EA              NG+    
Sbjct: 246 RKAEEKSNGHVTQSPSS--------------SNSDQGEA-------------WNGDYRTP 303

Query: 301 NYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
                Q+S+Y     +R E+G+CSGQQ  S+S N  +Q RLAIK
Sbjct: 306 QGDEMQSSAY-----KRREEGECSGQQWNSLSSNHPSQARLAIK 303

[Close]

BLAST of Carg02706 vs. ExPASy Swiss-Prot
Match: Q84JP1 (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NFYA7 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-20
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 121 HSIACASNQYQDPYYAGLMAAYGHQPMG-YPPFIGMPHARMALPLEVAQEPVFVNAKQYQ 180
           +S+A     Y DPYY  + A       G +   +G+    + LP +  +EPVFVNAKQY 
Sbjct: 51  NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query: 181 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRF--AKKNEAKSLSSTM 240
           GILRRRQ+RA+ E +NK+IK RKPYLHESRH HA+RR RG GGRF  AKK +     S+ 
Sbjct: 111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170

Query: 241 KSKES-GSGQAISSSSSGS 256
           + K +  +G++  ++SSG+
Sbjct: 171 EEKSNLSAGKSAMAASSGT 189

[Close]

BLAST of Carg02706 vs. ExPASy Swiss-Prot
Match: Q93ZH2 (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana OX=3702 GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-17
Identity = 73/204 (35.78%), Postives = 112/204 (54.90%), Query Frame = 0


Query: 58  ASESNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLE 117
           +S +     S  ++    DD+ +++   ++    +   +   ++ P+   G +T  P + 
Sbjct: 68  SSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPK--QGSMTGFPNIH 127

Query: 118 LVGHSIACASNQYQDPYYAGLMAA--YGHQPMGYPPFIGMPHARMALPLEVAQ-EPVFVN 177
               + A  S  Y DP+Y GL+AA      P   P  + M   R+ LP E+ + +PVFVN
Sbjct: 128 F-APAQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVN 187

Query: 178 AKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRF--AKKNEAKS 237
           AKQY  I+RRRQ RAK E +NKLI+ RKPYLHESRH HA++R RG+GGRF   KK   +S
Sbjct: 188 AKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQES 247

Query: 238 LSSTMKSKESGS-GQAISSSSSGS 256
             +  + +E    GQ ++  ++ S
Sbjct: 248 EQAAAREQEQDKLGQQVNRKTNMS 268

[Close]

BLAST of Carg02706 vs. ExPASy Swiss-Prot
Match: Q9SYH4 (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-17
Identity = 88/271 (32.47%), Postives = 130/271 (47.97%), Query Frame = 0


Query: 38  SPSATGGNVSNSPSLECTNGASESNDQ--SMSNADLNEDDDDDTTKET--------QAAS 97
           S   T  N+  S S   T     S  Q  +M ++ L   + D T+ ++        + AS
Sbjct: 15  SMPTTNSNIQGSESFSLTKDMIMSTTQLPAMKHSGLQLQNQDSTSSQSTEEESGGGEVAS 74

Query: 98  YGQGQ----------------------HNNQHAVSTAPRVHGGCITQPPQLELVGHSIAC 157
           +G+ +                       N   +++T+  V    +   P    +  S+ C
Sbjct: 75  FGEYKRYGCSIVNNNLSGYIENLGKPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQC 134

Query: 158 AS----NQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQ-EPVFVNAKQYQG 217
           A     N +  P YA    A  H  M     +G+  +R+ LP  + + EP+FVNAKQY  
Sbjct: 135 AETSHFNGFLAPEYASTPTALPHLEM-----MGLVSSRVPLPHHIQENEPIFVNAKQYHA 194

Query: 218 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 272
           ILRRR+ RAK E +NKLIK RKPYLHESRH HA++RARG+GGRF    + +  S+++ S 
Sbjct: 195 ILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSS 254

[Close]

BLAST of Carg02706 vs. ExPASy TrEMBL
Match: A0A6J1H3M1 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111459713 PE=3 SV=1)

HSP 1 Score: 646.4 bits (1666), Expect = 6.9e-182
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE
Sbjct: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60

Query: 61  SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 120
           SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG
Sbjct: 61  SNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVG 120

Query: 121 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 180
           HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG
Sbjct: 121 HSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQG 180

Query: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 240
           ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK
Sbjct: 181 ILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSK 240

Query: 241 ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS 300
           ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS
Sbjct: 241 ESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSS 300

Query: 301 FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 301 FQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 340

[Close]

BLAST of Carg02706 vs. ExPASy TrEMBL
Match: A0A6J1K375 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111490751 PE=3 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 6.7e-177
Identity = 336/342 (98.25%), Postives = 337/342 (98.54%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPI PSATGGNVSNSPSLECTNGASE
Sbjct: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPIYPSATGGNVSNSPSLECTNGASE 60

Query: 61  SND-QSMSNADLNE-DDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLEL 120
           SND QSMSNADLNE DDDDDTTKETQAASYGQ QHNNQHAVSTAPRVHGGCITQPPQLEL
Sbjct: 61  SNDGQSMSNADLNEDDDDDDTTKETQAASYGQSQHNNQHAVSTAPRVHGGCITQPPQLEL 120

Query: 121 VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY 180
           VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY
Sbjct: 121 VGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQY 180

Query: 181 QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK 240
           QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK
Sbjct: 181 QGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMK 240

Query: 241 SKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY 300
           +KESGSGQAISSSSSGSEAVPGAL ETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY
Sbjct: 241 NKESGSGQAISSSSSGSEAVPGALTETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY 300

Query: 301 SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 301 SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 342

[Close]

BLAST of Carg02706 vs. ExPASy TrEMBL
Match: A0A6J1D691 (Nuclear transcription factor Y subunit OS=Momordica charantia OX=3673 GN=LOC111017316 PE=3 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.7e-156
Identity = 300/344 (87.21%), Postives = 314/344 (91.28%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           M SKSKSVNQ+ESEPPNMQQTGSYSEPWWRSIGYNPISP A GGNVSNS SLECTNGASE
Sbjct: 1   MHSKSKSVNQLESEPPNMQQTGSYSEPWWRSIGYNPISPPAAGGNVSNSTSLECTNGASE 60

Query: 61  SND-QSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELV 120
           SN+ QSMSN DLNE+DDDD TK++QAASYGQ QHN Q AVSTAP VHGGCITQPPQLELV
Sbjct: 61  SNEGQSMSNDDLNEEDDDDNTKDSQAASYGQEQHNTQRAVSTAPTVHGGCITQPPQLELV 120

Query: 121 GHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQ 180
           GH+IACASN YQDPYY GLM AYGHQP+GYPPF+GMPHARMALPLEV QEPVFVNAKQYQ
Sbjct: 121 GHNIACASNPYQDPYYPGLMTAYGHQPLGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQ 180

Query: 181 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKS 240
           GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARG+GGRFAKK+E  S  STMK 
Sbjct: 181 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKSEVNSSCSTMKD 240

Query: 241 KESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFH 300
           KE GSGQAISS   SSSGSEAVP  LAETWNSSN QQEAR QLHE+YEAR+YVNG+SHF 
Sbjct: 241 KECGSGQAISSHSASSSGSEAVPRVLAETWNSSNGQQEARTQLHETYEARTYVNGSSHFQ 300

Query: 301 NYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           NYSSFQASSYAL +GERGEDGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 301 NYSSFQASSYALRTGERGEDGDCSGQQRGSISENQAAQRRLAIK 344

[Close]

BLAST of Carg02706 vs. ExPASy TrEMBL
Match: A0A6J1FTP1 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111448699 PE=3 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 7.4e-152
Identity = 294/344 (85.47%), Postives = 311/344 (90.41%), Query Frame = 0


Query: 1   MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASE 60
           MQSK +SVNQ+ESEPPNMQQT SYSEPWWRSIGYN ISP A GGN+SNS SLEC NGASE
Sbjct: 1   MQSKPRSVNQLESEPPNMQQTSSYSEPWWRSIGYNQISPPAAGGNLSNSTSLECPNGASE 60

Query: 61  SND-QSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELV 120
           SND  SMSN DLNEDDDDDTTK++ A SYGQ Q+N+QHAVS AP VHGGCITQPPQLELV
Sbjct: 61  SNDGPSMSNDDLNEDDDDDTTKDSHAVSYGQVQNNSQHAVSAAPTVHGGCITQPPQLELV 120

Query: 121 GHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQ 180
           GHSIACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQ
Sbjct: 121 GHSIACASNLYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQ 180

Query: 181 GILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKS 240
           GILRRRQARAKAEVENKLIK+RKPYLHESRHQHAMRRARG+GGRFAKKNE  S SSTMK+
Sbjct: 181 GILRRRQARAKAEVENKLIKIRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKN 240

Query: 241 KESGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFH 300
           K+SGSGQA SS    SSGSEA P ALAETWNSSN QQEAR QLHE+Y+ARSYVNG+  FH
Sbjct: 241 KDSGSGQAFSSHSAGSSGSEAAPCALAETWNSSNGQQEARTQLHEAYKARSYVNGSEQFH 300

Query: 301 NYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           NYSSFQASSYAL SGERG+DGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 301 NYSSFQASSYALRSGERGDDGDCSGQQRGSISENQAAQRRLAIK 343

[Close]

BLAST of Carg02706 vs. ExPASy TrEMBL
Match: A0A6J1FW74 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111448699 PE=3 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 6.3e-151
Identity = 292/342 (85.38%), Postives = 309/342 (90.35%), Query Frame = 0


Query: 3   SKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASESN 62
           SK +SVNQ+ESEPPNMQQT SYSEPWWRSIGYN ISP A GGN+SNS SLEC NGASESN
Sbjct: 21  SKPRSVNQLESEPPNMQQTSSYSEPWWRSIGYNQISPPAAGGNLSNSTSLECPNGASESN 80

Query: 63  D-QSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGH 122
           D  SMSN DLNEDDDDDTTK++ A SYGQ Q+N+QHAVS AP VHGGCITQPPQLELVGH
Sbjct: 81  DGPSMSNDDLNEDDDDDTTKDSHAVSYGQVQNNSQHAVSAAPTVHGGCITQPPQLELVGH 140

Query: 123 SIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGI 182
           SIACASN YQDPYYAG+MAAYGHQP GYPPF+GMPHARMALPLEV QEPVFVNAKQYQGI
Sbjct: 141 SIACASNLYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGI 200

Query: 183 LRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKE 242
           LRRRQARAKAEVENKLIK+RKPYLHESRHQHAMRRARG+GGRFAKKNE  S SSTMK+K+
Sbjct: 201 LRRRQARAKAEVENKLIKIRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKNKD 260

Query: 243 SGSGQAISS---SSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNY 302
           SGSGQA SS    SSGSEA P ALAETWNSSN QQEAR QLHE+Y+ARSYVNG+  FHNY
Sbjct: 261 SGSGQAFSSHSAGSSGSEAAPCALAETWNSSNGQQEARTQLHEAYKARSYVNGSEQFHNY 320

Query: 303 SSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
           SSFQASSYAL SGERG+DGDCSGQQRGSISENQAAQRRLAIK
Sbjct: 321 SSFQASSYALRSGERGDDGDCSGQQRGSISENQAAQRRLAIK 361

[Close]

BLAST of Carg02706 vs. TAIR 10
Match: AT5G12840.2 (nuclear factor Y, subunit A1 )

HSP 1 Score: 212.2 bits (539), Expect = 6.4e-55
Identity = 142/278 (51.08%), Postives = 183/278 (65.83%), Query Frame = 0


Query: 1   MQSKSKSVNQVE-SEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGAS 60
           MQSK    N+ E +    +QQ   Y+EPWW++  +  +  +   G  SNS SL+C NG S
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNG-S 60

Query: 61  ESND-QSMSNADLNEDDDDDTTKETQAA----SYGQGQHNNQHAVSTAPRVHGGCITQPP 120
           ESND  S S       ++D T K++QAA    S   G   N  A+S    +H   + QPP
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSDNHGMEGNDPALSIR-NMHDQPLVQPP 120

Query: 121 QLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVN 180
             ELVGH IAC  N YQDPYY GLM AYGHQ +G+ P++GMP  R ALPL++AQEPV+VN
Sbjct: 121 --ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVN 180

Query: 181 AKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS-L 240
           AKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++  
Sbjct: 181 AKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGE 240

Query: 241 SSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNS 272
            +  + +E GS    +++SSGSE V     ET NSS +
Sbjct: 241 DAGGRDRERGS----ATNSSGSEQVETDSNETLNSSGA 270

[Close]

BLAST of Carg02706 vs. TAIR 10
Match: AT5G12840.4 (nuclear factor Y, subunit A1 )

HSP 1 Score: 212.2 bits (539), Expect = 6.4e-55
Identity = 142/278 (51.08%), Postives = 183/278 (65.83%), Query Frame = 0


Query: 1   MQSKSKSVNQVE-SEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGAS 60
           MQSK    N+ E +    +QQ   Y+EPWW++  +  +  +   G  SNS SL+C NG S
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNG-S 60

Query: 61  ESND-QSMSNADLNEDDDDDTTKETQAA----SYGQGQHNNQHAVSTAPRVHGGCITQPP 120
           ESND  S S       ++D T K++QAA    S   G   N  A+S    +H   + QPP
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSDNHGMEGNDPALSIR-NMHDQPLVQPP 120

Query: 121 QLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVN 180
             ELVGH IAC  N YQDPYY GLM AYGHQ +G+ P++GMP  R ALPL++AQEPV+VN
Sbjct: 121 --ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVN 180

Query: 181 AKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS-L 240
           AKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++  
Sbjct: 181 AKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGE 240

Query: 241 SSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNS 272
            +  + +E GS    +++SSGSE V     ET NSS +
Sbjct: 241 DAGGRDRERGS----ATNSSGSEQVETDSNETLNSSGA 270

[Close]

BLAST of Carg02706 vs. TAIR 10
Match: AT5G12840.1 (nuclear factor Y, subunit A1 )

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-54
Identity = 141/279 (50.54%), Postives = 184/279 (65.95%), Query Frame = 0


Query: 1   MQSKSKSVNQVE-SEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGAS 60
           MQSK    N+ E +    +QQ   Y+EPWW++  +  +  +   G  SNS SL+C NG S
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNG-S 60

Query: 61  ESND-QSMSNADLNEDDDDDTTKETQAASYGQ-----GQHNNQHAVSTAPRVHGGCITQP 120
           ESND  S S       ++D T K++QAA+  +     G   N  A+S    +H   + QP
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIR-NMHDQPLVQP 120

Query: 121 PQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFV 180
           P  ELVGH IAC  N YQDPYY GLM AYGHQ +G+ P++GMP  R ALPL++AQEPV+V
Sbjct: 121 P--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYV 180

Query: 181 NAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS- 240
           NAKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++ 
Sbjct: 181 NAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAG 240

Query: 241 LSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNS 272
             +  + +E GS    +++SSGSE V     ET NSS +
Sbjct: 241 EDAGGRDRERGS----ATNSSGSEQVETDSNETLNSSGA 271

[Close]

BLAST of Carg02706 vs. TAIR 10
Match: AT5G12840.3 (nuclear factor Y, subunit A1 )

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-54
Identity = 141/279 (50.54%), Postives = 184/279 (65.95%), Query Frame = 0


Query: 1   MQSKSKSVNQVE-SEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGAS 60
           MQSK    N+ E +    +QQ   Y+EPWW++  +  +  +   G  SNS SL+C NG S
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNG-S 60

Query: 61  ESND-QSMSNADLNEDDDDDTTKETQAASYGQ-----GQHNNQHAVSTAPRVHGGCITQP 120
           ESND  S S       ++D T K++QAA+  +     G   N  A+S    +H   + QP
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIR-NMHDQPLVQP 120

Query: 121 PQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFV 180
           P  ELVGH IAC  N YQDPYY GLM AYGHQ +G+ P++GMP  R ALPL++AQEPV+V
Sbjct: 121 P--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYV 180

Query: 181 NAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKS- 240
           NAKQY+GILRRR+ARAKAE+E K+I+ RKPYLHESRH+HAMRRAR +GGRFAKK+E ++ 
Sbjct: 181 NAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAG 240

Query: 241 LSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNS 272
             +  + +E GS    +++SSGSE V     ET NSS +
Sbjct: 241 EDAGGRDRERGS----ATNSSGSEQVETDSNETLNSSGA 271

[Close]

BLAST of Carg02706 vs. TAIR 10
Match: AT3G20910.1 (nuclear factor Y, subunit A9 )

HSP 1 Score: 196.8 bits (499), Expect = 2.8e-50
Identity = 157/344 (45.64%), Postives = 195/344 (56.69%), Query Frame = 0


Query: 1   MQSKSKS-VNQVESEPPNMQQTGSYS-EPWWRSIGYNPISPSATGGNVSNSPSLECTNGA 60
           M SKS S  N+V+SE      +   S  PW R+      + S   G+ S S S+     A
Sbjct: 6   MHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAAAACNANSSVEAGDKS-SKSIAL---A 65

Query: 61  SESN-DQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLE 120
            ESN  +S SN D   + +   T   Q+A  G     NQ +      +H G    PP  +
Sbjct: 66  LESNGSKSPSNRDNTVNKESQVTTSPQSA--GDYSDKNQES------LHHGITQPPPHPQ 125

Query: 121 LVGHSIACA-SNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAK 180
           LVGH++  A SN YQDPYYAG+M AYGH P+G+ P+ GMPH+RM LP E+AQEPVFVNAK
Sbjct: 126 LVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAK 185

Query: 181 QYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSST 240
           QYQ ILRRRQARAKAE+E KLIK RKPYLHESRHQHAMRR RGTGGRFAKK   +  +S 
Sbjct: 186 QYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRFAKKTNTE--ASK 245

Query: 241 MKSKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFH 300
            K++E  +G    S SS              S++ Q EA              NG+    
Sbjct: 246 RKAEEKSNGHVTQSPSS--------------SNSDQGEA-------------WNGDYRTP 303

Query: 301 NYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 341
                Q+S+Y     +R E+G+CSGQQ  S+S N  +Q RLAIK
Sbjct: 306 QGDEMQSSAY-----KRREEGECSGQQWNSLSSNHPSQARLAIK 303

The following BLAST results are available for this feature:

BLAST of Carg02706 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958505.1	1.4e-181	100.00	nuclear transcription factor Y subunit A-1-like [Cucurbita moschata] >XP_0229585...	[more]
KAG6605918.1	1.4e-181	100.00	Nuclear transcription factor Y subunit A-1, partial [Cucurbita argyrosperma subs...	[more]
XP_023533872.1	4.3e-178	99.12	nuclear transcription factor Y subunit A-1-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022995109.1	1.4e-176	98.25	nuclear transcription factor Y subunit A-1-like [Cucurbita maxima] >XP_022995110...	[more]
XP_022148721.1	3.5e-156	87.21	nuclear transcription factor Y subunit A-1-like [Momordica charantia] >XP_022148...	[more]

BLAST of Carg02706 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXV5	1.5e-53	50.54	Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q945M9	3.9e-49	45.64	Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84JP1	1.7e-20	46.76	Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q93ZH2	2.3e-17	35.78	Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SYH4	2.3e-17	32.47	Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Carg02706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3M1	6.9e-182	100.00	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1K375	6.7e-177	98.25	Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC1114907...	[more]
A0A6J1D691	1.7e-156	87.21	Nuclear transcription factor Y subunit OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1FTP1	7.4e-152	85.47	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1FW74	6.3e-151	85.38	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of Carg02706 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12840.2	6.4e-55	51.08	nuclear factor Y, subunit A1	[more]
AT5G12840.4	6.4e-55	51.08	nuclear factor Y, subunit A1	[more]
AT5G12840.1	1.1e-54	50.54	nuclear factor Y, subunit A1	[more]
AT5G12840.3	1.1e-54	50.54	nuclear factor Y, subunit A1	[more]
AT3G20910.1	2.8e-50	45.64	nuclear factor Y, subunit A9	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 201..224 score: 81.71 coord: 170..192 score: 74.15
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 166..227 e-value: 2.7E-35 score: 133.2
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 169..224 e-value: 2.3E-26 score: 92.1
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 31..331
IPR001289	Nuclear transcription factor Y subunit A	PROSITE	PS51152	NFYA_HAP2_2	coord: 167..227 score: 36.537865
None	No IPR available	GENE3D	6.10.250.2430		coord: 167..229 e-value: 5.6E-30 score: 105.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..340
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..106
None	No IPR available	PANTHER	PTHR12632:SF59	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9	coord: 31..331
IPR018362	CCAAT-binding factor, conserved site	PROSITE	PS00686	NFYA_HAP2_1	coord: 172..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02706-RA	Carg02706-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity