|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCCATCCAACGGTCATCATTTCATGGAAATCAGACCGTTGTGACAGGCATTGGCTCCGCTCGCAGCTTTAAAGAGGAAACGACACAATGCCACAGAGAGCAATCGATACGGAAACGCAGAGAAAAACTGAAAAATTCTCAGAGGAAAAAAGCGAGAACGATCGTGAAAAGAGTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGAGTGTATGTGATCGACGGAGTGGCGACGAGAAACACTGA mRNA sequence ATGCCCATCCAACGGTCATCATTTCATGGAAATCAGACCGTTGTGACAGGCATTGGCTCCGCTCGCAGCTTTAAAGAGGAAACGACACAATGCCACAGAGAGCAATCGATACGGAAACGCAGAGAAAAACTGAAAAATTCTCAGAGGAAAAAAGCGAGAACGATCGTGAAAAGAGTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGAGTGTATGTGATCGACGGAGTGGCGACGAGAAACACTGA Coding sequence (CDS) ATGCCCATCCAACGGTCATCATTTCATGGAAATCAGACCGTTGTGACAGGCATTGGCTCCGCTCGCAGCTTTAAAGAGGAAACGACACAATGCCACAGAGAGCAATCGATACGGAAACGCAGAGAAAAACTGAAAAATTCTCAGAGGAAAAAAGCGAGAACGATCGTGAAAAGAGTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGAGTGTATGTGATCGACGGAGTGGCGACGAGAAACACTGA Protein sequence MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQSIRKRREKLKNSQRKKARTIVKRVKEEEEEEEEEKKKSVCDRRSGDEKH
Homology
BLAST of Carg02670 vs. NCBI nr
Match: KAG7035901.1 (hypothetical protein SDJN02_02701, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 150.2 bits (378), Expect = 7.9e-33 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query: 1 MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQSIRKRREKLKNSQRKKARTIVKRVK 60
MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQSIRKRREKLKNSQRKKARTIVKRVK
Sbjct: 1 MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQSIRKRREKLKNSQRKKARTIVKRVK 60
Query: 61 EEEEEEEEEKKKSVCDRRSGDEKH 85
EEEEEEEEEKKKSVCDRRSGDEKH
Sbjct: 61 EEEEEEEEEKKKSVCDRRSGDEKH 84
BLAST of Carg02670 vs. NCBI nr
Match: XP_022957843.1 (cyclin-B1-4-like [Cucurbita moschata]) HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13 Identity = 53/76 (69.74%), Postives = 57/76 (75.00%), Query Frame = 0
Query: 1 MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQSIRKRREKLKNSQRKKARTIVKRVK 60
MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQ IRKRREKLKNSQ +K+ R K
Sbjct: 1 MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQLIRKRREKLKNSQEEKSEN--DRSK 60
Query: 61 EEEEEEEEEKKKSVCD 77
E ++ V D
Sbjct: 61 SERRRRRRRRRVYVID 74
BLAST of Carg02670 vs. ExPASy TrEMBL
Match: A0A6J1H1E7 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111459264 PE=3 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13 Identity = 53/76 (69.74%), Postives = 57/76 (75.00%), Query Frame = 0
Query: 1 MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQSIRKRREKLKNSQRKKARTIVKRVK 60
MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQ IRKRREKLKNSQ +K+ R K
Sbjct: 1 MPIQRSSFHGNQTVVTGIGSARSFKEETTQCHREQLIRKRREKLKNSQEEKSEN--DRSK 60
Query: 61 EEEEEEEEEKKKSVCD 77
E ++ V D
Sbjct: 61 SERRRRRRRRRVYVID 74
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7035901.1 | 7.9e-33 | 100.00 | hypothetical protein SDJN02_02701, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_022957843.1 | 2.4e-13 | 69.74 | cyclin-B1-4-like [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1H1E7 | 1.2e-13 | 69.74 | B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111459264 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 45..76 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 55..84 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 26..41 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..84 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009987 |
cellular process |
|
