Carg02632 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02632
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 7684318 .. 7685101 (+)
RNA-Seq ExpressionCarg02632
SyntenyCarg02632
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGTAGTACCATTTAGAAGCAACCTCATAGTCAGGGCCAGTGGAGTCTTGCTCATTCATTTGCAGAATCTCTTTCATTTGATCAATGGAAATACTCTCTCTTGTAGCTTTACAGAACGATTCAAACTCGTCTGCAAGATCGGTTTCGGATTTGCAGTTCGGGCGCCCATTTTCGTCTTCAGACTTTACTTTCTTAGGTGATTGTTCATTTTCATGTGTCTTGCTCTCTGCCTTTTGTTTCCTTGTCATTATCTTTTCTTCTTCACCAGAACCATGAGCGTGAGAATGGGATCTCTTTTCATGAACCTTCAAAATTTGTACACAAATTAGCTAATTTTCTTGAACTGTTCTGACATTTCTTTTATGAACTTTCAATTGTGTTCTTTCTCTACTTGCAGAAACACCATTTTTGTATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGGTACCAATGTTAGTTGTTATTTTGATTTGAACTTCTACTAGTTCTTAGTTAGATGATTAAGCTGGAAAACACAAGACAGACGCATAAACATCAGAAGAACACTGATTTGGTTAAATGAGTAGCAAACCCATGAAACATTAATGCTAGAGATTCATAGAAACGAATGAAAGCGCATCTGTGTATATAATATAGAAGCTAAGAGGATCAAACCTTCATCTTTCAGTTTTTCTCTCTGTTTTGGATGAACACAGATGAGAGAGCAGCAAAAATAAAGCACTCCCCAACAAAGAAGGCAGTGAAAGGCAAAGCAATCAGATCC

mRNA sequence

AATGGTAGTACCATTTAGAAGCAACCTCATAGTCAGGGCCAGTGGAGTCTTGCTCATTCATTTGCAGAATCTCTTTCATTTGATCAATGGAAATACTCTCTCTTGTAGCTTTACAGAACGATTCAAACTCGTCTGCAAGATCGGTTTCGGATTTGCAGTTCGGGCGCCCATTTTCGTCTTCAGACTTTACTTTCTTAGAAACACCATTTTTGTATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGATGAGAGAGCAGCAAAAATAAAGCACTCCCCAACAAAGAAGGCAGTGAAAGGCAAAGCAATCAGATCC

Coding sequence (CDS)

ATGGAAATACTCTCTCTTGTAGCTTTACAGAACGATTCAAACTCGTCTGCAAGATCGGTTTCGGATTTGCAGTTCGGGCGCCCATTTTCGTCTTCAGACTTTACTTTCTTAGAAACACCATTTTTGTATCAGGTGGACTTCTCAAAGGATTTGGCCGACAGCTTAATGGAATTTACAGATGAGAGAGCAGCAAAAATAAAGCACTCCCCAACAAAGAAGGCAGTGAAAGGCAAAGCAATCAGATCC

Protein sequence

MEILSLVALQNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTDERAAKIKHSPTKKAVKGKAIRS
Homology
[Close]
BLAST of Carg02632 vs. NCBI nr
Match: KAG6605988.1 (hypothetical protein SDJN03_03305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.2 bits (391), Expect = 2.4e-34
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MEILSLVALQNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTD 60
          MEILSLVALQNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTD
Sbjct: 1  MEILSLVALQNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTD 60

Query: 61 ERAAKIKHSPTKKAVKGKAIRS 83
          ERAAKIKHSPTKKAVKGKAIRS
Sbjct: 61 ERAAKIKHSPTKKAVKGKAIRS 82

[Close]
BLAST of Carg02632 vs. NCBI nr
Match: KAG7035938.1 (hypothetical protein SDJN02_02738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.2 bits (391), Expect = 2.4e-34
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MEILSLVALQNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTD 60
          MEILSLVALQNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTD
Sbjct: 1  MEILSLVALQNDSNSSARSVSDLQFGRPFSSSDFTFLETPFLYQVDFSKDLADSLMEFTD 60

Query: 61 ERAAKIKHSPTKKAVKGKAIRS 83
          ERAAKIKHSPTKKAVKGKAIRS
Sbjct: 61 ERAAKIKHSPTKKAVKGKAIRS 82

The following BLAST results are available for this feature:
BLAST of Carg02632 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605988.12.4e-34100.00hypothetical protein SDJN03_03305, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035938.12.4e-34100.00hypothetical protein SDJN02_02738, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg02632 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02632 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02632 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02632-RACarg02632-RAmRNA