Carg02625 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02625
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S acidic ribosomal protein family
Location	Carg_Chr02: 7741617 .. 7742686 (+)
RNA-Seq Expression	Carg02625
Synteny	Carg02625

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTGTCTTCGTCTTGGTTGCAGCTTCTGTTTCGATCTTCTCAAGTACGCATTCTTGTACCATTTTTTTTCGCTGATTTATTTTCTTTAAGTTCTTCTCGTTTATGGTGTCTGATATTTTATGTTGTTGAAGCAGAGATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGTGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGGTTCTTCTTTTACAATCTTTCTTTTAGTTAAAAGTTTAAGTTACTATACTGGTGTTGTTGCTGTTTAAGATTGATTAGTATTTTATGGTTTGGGAATGGTTAGTTTTCGTTCAATCCAAAAGATTAGGGTAGGCTGGAAATGAAGTGAAATCTTCAATTGACTGACCTGAAACGATTAGTGCTCTTAGTGAATTTGTGTTGAGATTCCTAGCGGGGTTTTGTTTACAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGTAAGTTCTTAACCGGTTATTCTAAGGGTTACACATTTTCTTTTCTACATGGTAATTGCTTGGTCTATATATATAATGACACCTAAATTTTATGTTCGTATGTTCTTCTATCTTTTTGCAGGACATGGGTTTCAGCCTCTTTGATTAAGCAACTCTTTAGTTGACGTTATCAGTTAGTGCTTTAGTTTACTTTCGTTCAATCTTCCGAGCTGTGTAGCTTGGTAGGTGTTTTTCACTTTCTTTAACTTCATTAGTACTCACAAATTTTGATAGATGAAAGTGCAATTTTCAGTTTGAACTTCTCAGCGATTACTGTCATTTGACTTGCGTGATTTATGATTCCCGTCTCATTTCAATATGCATGATTAATTTAGAGTATGCTAATT

mRNA sequence

ATTCTGTCTTCGTCTTGGTTGCAGCTTCTGTTTCGATCTTCTCAAAGATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGTGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGACATGGGTTTCAGCCTCTTTGATTAAGCAACTCTTTAGTTGACGTTATCAGTTAGTGCTTTAGTTTACTTTCGTTCAATCTTCCGAGCTGTGTAGCTTGGTAGGTGTTTTTCACTTTCTTTAACTTCATTAGTACTCACAAATTTTGATAGATGAAAGTGCAATTTTCAGTTTGAACTTCTCAGCGATTACTGTCATTTGACTTGCGTGATTTATGATTCCCGTCTCATTTCAATATGCATGATTAATTTAGAGTATGCTAATT

Coding sequence (CDS)

ATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGTGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGACATGGGTTTCAGCCTCTTTGATTAA

Protein sequence

MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD

Homology

[Close]

BLAST of Carg02625 vs. NCBI nr
Match: KAG6605995.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE
Sbjct: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 143

[Close]

BLAST of Carg02625 vs. NCBI nr
Match: XP_022957717.1 (60S acidic ribosomal protein P2B-like [Cucurbita moschata] >KAG7035945.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Carg02625 vs. NCBI nr
Match: XP_023532554.1 (60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.2 bits (500), Expect = 7.6e-47
Identity = 111/114 (97.37%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVD INSLLTQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDSINSLLTQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAPAG A GGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGAAGGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Carg02625 vs. NCBI nr
Match: XP_022996218.1 (60S acidic ribosomal protein P2B-like [Cucurbita maxima])

HSP 1 Score: 191.0 bits (484), Expect = 5.5e-45
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD +RINSLLTQVKGKDITELI SGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDENRINSLLTQVKGKDITELITSGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAA AGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAATAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Carg02625 vs. NCBI nr
Match: KAG6570492.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.6 bits (475), Expect = 6.1e-44
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGRE
Sbjct: 70  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 129

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAV +AAPAGGAAGGGAAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 130 KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 184

[Close]

BLAST of Carg02625 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-35
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE D +++  LLT++K KDITE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           +L+SVPSGGGA+ + APA   AGGGAAPA   KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPA-AVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]

BLAST of Carg02625 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-32
Identity = 84/114 (73.68%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MK VAAYLLAVL GN SP  DD+  IL SVG EVD +++  LL+Q+ GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           K ASVP GGG VAVAA A   A GGAAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAAA--PAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of Carg02625 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-31
Identity = 81/115 (70.43%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  SP   D+KDIL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPS GGG VAVA+   G  GGG APAA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg02625 vs. ExPASy Swiss-Prot
Match: Q9LXM8 (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-31
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG    AAP   ++GGG A A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAP---SSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Carg02625 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.2e-30
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPS GGG VAVA+   G  GGG A AA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg02625 vs. ExPASy TrEMBL
Match: A0A6J1GZW9 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111459175 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.2e-49
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Carg02625 vs. ExPASy TrEMBL
Match: A0A6J1KA82 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111491509 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD +RINSLLTQVKGKDITELI SGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDENRINSLLTQVKGKDITELITSGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAA AGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAATAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Carg02625 vs. ExPASy TrEMBL
Match: A0A6J1J9Z4 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111483902 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.5e-44
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAV +AAPAGGAAGGGAAPAA E KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Carg02625 vs. ExPASy TrEMBL
Match: A0A6J1FYH3 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448674 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.5e-44
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAV +AAPAGG AGGGAAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Carg02625 vs. ExPASy TrEMBL
Match: A0A6J1DJB9 (60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC111020580 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EVD DRI SLL+QVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAA-EKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAPAGGAAGGGAAPAAA EKKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDDDLGFSLFD 115

[Close]

BLAST of Carg02625 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-32
Identity = 81/115 (70.43%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  SP   D+KDIL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPS GGG VAVA+   G  GGG APAA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg02625 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-32
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG    AAP   ++GGG A A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAP---SSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Carg02625 vs. TAIR 10
Match: AT3G44590.1 (60S acidic ribosomal protein family )

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-32
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG    AAP   ++GGG A A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAP---SSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Carg02625 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-31
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPS GGG VAVA+   G  GGG A AA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg02625 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-31
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPS GGG VAVA+   G  GGG A AA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

The following BLAST results are available for this feature:

BLAST of Carg02625 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605995.1	1.1e-48	100.00	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022957717.1	1.1e-48	100.00	60S acidic ribosomal protein P2B-like [Cucurbita moschata] >KAG7035945.1 60S aci...	[more]
XP_023532554.1	7.6e-47	97.37	60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996218.1	5.5e-45	95.61	60S acidic ribosomal protein P2B-like [Cucurbita maxima]	[more]
KAG6570492.1	6.1e-44	93.91	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Carg02625 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24415	4.1e-35	73.68	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P46252	1.1e-32	73.68	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
P51407	1.6e-31	70.43	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
Q9LXM8	4.7e-31	68.42	60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ...	[more]
Q9SLF7	5.2e-30	69.57	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]

BLAST of Carg02625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZW9	5.2e-49	100.00	60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111459...	[more]
A0A6J1KA82	2.7e-45	95.61	60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11149150...	[more]
A0A6J1J9Z4	8.5e-44	93.04	60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11148390...	[more]
A0A6J1FYH3	8.5e-44	93.04	60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1DJB9	1.9e-43	92.17	60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]

BLAST of Carg02625 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27720.1	1.1e-32	70.43	60S acidic ribosomal protein family	[more]
AT3G44590.2	3.3e-32	68.42	60S acidic ribosomal protein family	[more]
AT3G44590.1	3.3e-32	68.42	60S acidic ribosomal protein family	[more]
AT2G27710.1	3.7e-31	69.57	60S acidic ribosomal protein family	[more]
AT2G27710.2	3.7e-31	69.57	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 3.4E-25 score: 90.0
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..113 e-value: 1.9E-25 score: 89.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..114
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..114
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..114
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..114 e-value: 1.40873E-33 score: 110.816
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..114 score: 16.461323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02625-RA	Carg02625-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome