Carg02621 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02621
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 7756256 .. 7760093 (-)
RNA-Seq Expression	Carg02621
Synteny	Carg02621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGACTTGAGTAGAAAGAAAAGCATGTAAATAGATGGATTTGTCTATTATCTATTGTAGTGGTGAATTTTTTTCCTCTTCTGGAACGTTTTTTATTTTTTTAAAATTTTTTTTTGTAATGTTTCTTTTTGGATTCTGTTGGTGGTAAGAAAACATGATGGTGAAACAACATTTTGGTCTTCCAATTGATGAAATTTTCCTATCGGTTCTTCGTTAGGAATCTCCGTGATATTGTCTACTTTGAGTATAAGCTCTCATGCTTTTGATTTCTCTAAAAGGTCTCGTATTAATGAAAATAGTGTTCTATGCTTGTAAACTCATGATCTTCCTCTTAATTAACCAACGGAGGACTACTTTTCTCAATAATCTCCAACATTCTGTTTCGTTAGGTCAAAATAGCCTGGAGGGTTAATTGTGAATTGTGAATTTTGAAAGTAAGATCTAGATGCTATCCTTTTAATTTTGAATTTTTCAATCATCTTTCATTTTTCAAGCTCTTAGCTTGAAATTGAATTATAATTACATGAATTGATTTAGAACTGATTGATTTAGAACATTTTGATCAATAGCTAAAGAAAGGTTGAATTTGGTCGCTAGATAATTAAATCTAGACGAGGTGATTGGTAGCATTATTGATTTAGAATATTTTGATCAATAGCTAAAGAAAGGCTGAATTTGGTCCCTAGATAATTGAATCTACACGAGGTGATTGGTTTCTTATGCTACGTCCGTCAAAGCATATCAATAACTCACAAATCATATTGGCTCTATAACCATTTATCCAAAGGTAATCGGCCAATTTCTTCTGTTTTAACGAAACAAGACACACAACTGATAAGTTGATGCTAAGAGTCTATGACTGATACTAAACGTATATTTCAGCTGATCATAGAACGAACAAAATTGAATAGACAGAGATTGCATCACGTCGTGGAGATAGCCCAAAAGTCGATATCCTGCAACGAGTAGCTTGAATACCATAGTACAAAGGGAGGAAAGGAGGATCCATGGTCATGGTCTTAATGAAGGCTTCATTTTTGTTCCTCTTTTCTGTGACTCTTTCATTCATTTTAATGAAGGTTTGATTTTTGATAGGAGTAAAATTTGTTGGATAAAGCTAGGAACTCTGACCTTTTCCTTTTGTTATTTCAGTCTCCTCCTCCTTTTGGGGGGTAACACAGCCTGTATTTTTCAAATATATGGGTACCATTTTGTGTTTTATCATATTCCATGGCTGGCTGCTGCAATGATGCAGAATTGTAAGTCCTCTGGTACAAAGCTGCACAAGTTACCTGTTTATCAAAACTGGGACTTTCATTGCTTCCGAGCAAGATTTGATTACCTTGAACTAAATAATGTGCAAACTTATCTAACTCGTAATGTAATAGCTCAAGCCCACCGTTAGCAAATATTTTCACTTTGGTTCGTTACGTGTCACCATCAGCTTCACGGTTTTAAAACGCGTTTGCTAAGAAGAGATTTCCACACCCTTCAACTGATATAATATCTCATAATCCACCCCATTCGAAATCCAACCTTCCTTTGTTGGCACACCATCTAGTGCCTCGCTTTAATACCATTTGTAAGAGCTCAAGCCTACCGTTTGCATATAGATATTGTCTGCTTTGACTTGTTACATATCCTCATCAGTCTCACGGTTTTAAAACGCGTTTGTTAGGAGGAGGAGGTTTCAACACCCTTATAAAGGGTGTTTCGTTCTCCCCTCCAACTGATAGGAGATCTCAAAGCAAGAAATATGAATGTTTGAAGTTACGATGAGGCGGGATTTTTGGATCGGATGAAAAAAACATTGTAAAACAAGAGAAATTGGCCGGGGGGACAAAAAGGTATCTCTACTATTCCTTTGCAGTGTGGCCATTGCAGCTTTTATTTTCAAAACTGCTTCCTTCACCACCTCCCTACCTACTTTCACTTTCCCAAATTTAGCTTAGAGCTTCAGGAACATGGAACCATTTCAAAAAAATAAAGTAATCTGATAAATGTTTTGAGGAGTACCTTTCCATGAAGAGTCCGAGGAGTCTTGGAATCTTGGAACTTTTTTATTGAAATAATGTCTCTTTTCAAATTCAATGCCTGAATTCGTGAGATTCTAAAGTTATTCAGCCATAGCAACTCTGAAACAGAACGCCTTTATATATTCACAACAAAATGAGAAAAAGGGTAAAACTGTTTAATTTACCTTTGCTAAAAGGTGAATTTAGATATTCAAGAACACAAGATCTGGTTGGACCACAACCAACAAAACCCATTGAGATAGATTCTAAAAACAAAGTCTGAAAAGACTTTGAATTTATTCAAATGAAAACAATATTTGTTCAGCGGATACACATACCATATGACTTGAAATATATCCATTCCACAAAGGGATTAACCATTGCGTTACTTGAATAATTTGCATTATTTTGCATGAATGAAGTACCTATCCAGAGATCATTAATCTGAAAAGTGTTTGTTCTCTGCTAAGATGCTTTCCAACAGTGATTCACACGCATCTTCAAGCAAGTCCAGAACCTAAATTGACACATTGCATGATTTCAACAGAAGTACCAATTTAGTGGGCATTAAACTCAGCATCAAATGTAGATTTTAAGGGTATGCTGAAGAATTTAGACTATCAACTTGATGAACAGTGAATAGGTATCGTGTCGTTCATGAGTACTGTACAATCAACTTGATCTCAATCACAGAGCCAAGAAAAAAGAAGTTGTAAAAAACATATTTCAAAGAAAAAGAATGCCTTCATGTAAAGGATGAAAGAACCAGATGAATGAAAAGACTTACTAAGATATGCAGTAATTTGACATTCATGCAACTGATCTTTTATGAAAATTACAAGCACGCTAAATGTGACTGAAATGTTCATATGGAAGAAAAGGGAAACAACTAGCTGTTTTTTCATGGAAGCTGAAAAACAAGATGGTTCGGGAAGATTTGAACCTCTTAGTCAAAAGAATGTCTAAACTACTTGAGCTAAGCTCGAGTTGGCCTTAAAAAATACAGCTATATGATGATCAAAGATATATTTACAGTGTTGCAACTATATTTCTCCAGCAATTTTAGCCTAGAAAGTGAACCAGAATTCTATTCAAAGCATGTAAAAATCCAGAATACCAAATATCCAGAACAAACATATATAAGAATTTCTGGATTACCTTCTCAAAACCTTGTTGCCCACCATAATAAGGATCCGGTACCTCTGTTTCATTATGCCTTTTACAGTATGAGCACATTAATTTGACCTGACATTATTGCATCGGCATCTTTATGAGATCAAGTGTTGAAAAGAATGAAAATCATACACAAACACAAGTAATTCTCATTCAAGATCTTGTACTAACCTTCTTATGCGAATCAGGAGGGAGGGTATTCTTAGTTCTCCACCGTTCAAAAGCCCCTAAAATATCCTCTGTAGAAATAATCAAGACCCAGAAAATGAATCATTAACAAAGATTGAGTTAACCTGGAATGATTGCAATTGCAAAACATAGCACAAATACGAGGATTTTGCCATAGTATTCTCTTCTACCTCTGTTTTGCTTGTCCATGGCAAGAATAAGATCAAAATTTACAAAATCAGATGGCTGGATTGGCCTCGATATGGATGTTATAGGTATCCCGCGCCGTTTAGAAGCTGCTCTCATTCTTGGGTCGGCCTCATTACCCTTAAGAAATGAGTCAAAATCACTTAGAACCATATAGAACCAGATTTCGCTTCAAAGAAACTATAGCGATTGTTTAATTGCAGAGAAAACGAGAAAAGGAAACTGTTATAGGAGCGAGAATTTTCGCAAACCTGGAGGATGAAACCTTTTAA

mRNA sequence

ATGACTGACTTGAGTAGAAAGAAAAGCATCCTAGAAAGTGAACCAGAATTCTATTCAAAGCATGTAAAAATCCAGAATACCAAATATCCAGAACAAACATATATAAGAATTTCTGGATTACCTTCTCAAAACCTTGTTGCCCACCATAATAAGGATCCGAGAAAACGAGAAAAGGAAACTGTTATAGGAGCGAGAATTTTCGCAAACCTGGAGGATGAAACCTTTTAA

Coding sequence (CDS)

ATGACTGACTTGAGTAGAAAGAAAAGCATCCTAGAAAGTGAACCAGAATTCTATTCAAAGCATGTAAAAATCCAGAATACCAAATATCCAGAACAAACATATATAAGAATTTCTGGATTACCTTCTCAAAACCTTGTTGCCCACCATAATAAGGATCCGAGAAAACGAGAAAAGGAAACTGTTATAGGAGCGAGAATTTTCGCAAACCTGGAGGATGAAACCTTTTAA

Protein sequence

MTDLSRKKSILESEPEFYSKHVKIQNTKYPEQTYIRISGLPSQNLVAHHNKDPRKREKETVIGARIFANLEDETF

Homology

[Close]

BLAST of Carg02621 vs. NCBI nr
Match: KAG7035949.1 (hypothetical protein SDJN02_02749, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.3 bits (386), Expect = 8.3e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MTDLSRKKSILESEPEFYSKHVKIQNTKYPEQTYIRISGLPSQNLVAHHNKDPRKREKET 60
          MTDLSRKKSILESEPEFYSKHVKIQNTKYPEQTYIRISGLPSQNLVAHHNKDPRKREKET
Sbjct: 1  MTDLSRKKSILESEPEFYSKHVKIQNTKYPEQTYIRISGLPSQNLVAHHNKDPRKREKET 60

Query: 61 VIGARIFANLEDETF 76
          VIGARIFANLEDETF
Sbjct: 61 VIGARIFANLEDETF 75

The following BLAST results are available for this feature:

BLAST of Carg02621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035949.1	8.3e-34	100.00	hypothetical protein SDJN02_02749, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg02621 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02621 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02621 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02621-RA	Carg02621-RA	mRNA