Carg02611 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02611
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 7801856 .. 7802143 (+)
RNA-Seq ExpressionCarg02611
SyntenyCarg02611
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGCCCAAAATAGTCCAACTTACTCGAGGAACCGGCTATAGCCCGTCCCGTTCACGAGAATATTCCACTGGTTTCCTCCAGGTCATCGATTTTCGCTTACTATAAATACCCAATGCGCTTCACTTAATCGTCTCATCACAGAACGTTTCTACTCTCTTTCAATTATCTACCACGACTATCGCCGCCGTAAAGCTGGGTCCAACAGCCGCTGGCCGGGGACGGGGAATTTCAGAGGGTAGCTCCTCCGAAGCTCTCGATTTCCGCTTCTGGAAACTGAGGTAA

mRNA sequence

ATGTTGAAGCCCAAAATAGTCCAACTTACTCGAGGAACCGGCTATAGCCCGTCCCGTTCACGAGAATATTCCACTGGTTTCCTCCAGAACGTTTCTACTCTCTTTCAATTATCTACCACGACTATCGCCGCCGTAAAGCTGGGTCCAACAGCCGCTGGCCGGGGACGGGGAATTTCAGAGGGTAGCTCCTCCGAAGCTCTCGATTTCCGCTTCTGGAAACTGAGGTAA

Coding sequence (CDS)

ATGTTGAAGCCCAAAATAGTCCAACTTACTCGAGGAACCGGCTATAGCCCGTCCCGTTCACGAGAATATTCCACTGGTTTCCTCCAGAACGTTTCTACTCTCTTTCAATTATCTACCACGACTATCGCCGCCGTAAAGCTGGGTCCAACAGCCGCTGGCCGGGGACGGGGAATTTCAGAGGGTAGCTCCTCCGAAGCTCTCGATTTCCGCTTCTGGAAACTGAGGTAA

Protein sequence

MLKPKIVQLTRGTGYSPSRSREYSTGFLQNVSTLFQLSTTTIAAVKLGPTAAGRGRGISEGSSSEALDFRFWKLR
Homology
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BLAST of Carg02611 vs. NCBI nr
Match: KAG7035959.1 (hypothetical protein SDJN02_02759, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MLKPKIVQLTRGTGYSPSRSREYSTGFLQNVSTLFQLSTTTIAAVKLGPTAAGRGRGISE 60
          MLKPKIVQLTRGTGYSPSRSREYSTGFLQNVSTLFQLSTTTIAAVKLGPTAAGRGRGISE
Sbjct: 1  MLKPKIVQLTRGTGYSPSRSREYSTGFLQNVSTLFQLSTTTIAAVKLGPTAAGRGRGISE 60

Query: 61 GSSSEALDFRFWKLR 76
          GSSSEALDFRFWKLR
Sbjct: 61 GSSSEALDFRFWKLR 75

The following BLAST results are available for this feature:
BLAST of Carg02611 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035959.12.0e-32100.00hypothetical protein SDJN02_02759, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg02611 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02611 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02611 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02611-RACarg02611-RAmRNA