Carg02593 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02593
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSuperoxide dismutase [Cu-Zn]
LocationCarg_Chr02: 7925788 .. 7929260 (-)
RNA-Seq ExpressionCarg02593
SyntenyCarg02593
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACCAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTCGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGTCTGTACACACTCTATCAATAGCTCTTTTGCCTCATCGTATCGTAGTGGGTTTCTCGTAGTTTAGGATTAAGGGTTCGAATCGATATTTAGTATTTGATTTATGGGTGATTGAATCAAATGGCTGGGGTAATTGGAGTTGCCGTGGGGATTTTGAGGTTTATTTGGCGCCTAATTTCGAAGATTGACGTTGACTTTATTTGGAATGTGATTGTGCGTGCTAAGTGGAGTTTTTTTAATTTCTGCCTGCGTTGCTTTCTTCTTGACTGTTCTGTTATTTTTTTGTCATAATGTATTAGTAGTATGCGCGTAAGTTGACTTTTAGAACTAGATGAATATGATTGTTTTGATTTTATGACGTTTACTTCTCGTAGGATTCTGTTGTCTTGTTGGCCTATACACTATGGTTATTCTAGAACCAAAAAGCTTTTAAGGACACATCCCCTTAAGAAAATTTCAACTATTAAGGCAATAATACTAGTAATGACGTTGAAGATTATTGAGAGAAGTAGTCTCACATTGGCTAATTAAGAGAAAGATCATTGGTTTATTGGTACGAGGCCTTTTAGGTAAACCAAAGGCAAATCCATGAGAACTTATGCTCAAAGTAGATAATATCATATCATTGTGGAGGTTCGTGGTTTCTAACAATGAAAACAATGACGATAAGAATGAAAATGATAATAGTAATAGTAGTTGCAGTATTGTGATTCTGAAAAATGTTGTATTGTTGCTAGGTCCAACAACAGTAAATGTTCGAATTACCGGGCTCACGGAAGGGCTTCATGGATTCCATCTTGTAAGTAATTTGGCATTGGCTGACATGATCTATGGGCTTGTTGTTCTAATCAATCTACCTTCTTGTTTCCTTCTGTAGCATGAGTATGGAGACACAACAAATGGATGCATTTCTACAGGTAGTGTATGATCCATTGTCCATATTTGATTTTGATCCTTCTGTACCAAGAAGTTTTATTCTATCTAGCGAGGTTGTATTTTTGTCTCTCTTCAATTGTTTATGTATGATTTTCAATTATAGGACCACATTTCAATCCTAATAAGTTAACTCATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGTATCTGCTTCTTCTTTCTGAAAGGTTCTTTTATTTTTTGTTTCATGGATTTGTAACTTCTAATGCACGATATGCAGGAGTAGCGGAGGCAACCATTGTAGATAATCAGGTACCTCTATTATTTGATCCGTATCTGTCATCATCACAATCCATATGCTCAGAATTATTGATGTCTTTCATCATGAATGGCGTCGCAATAACCACAAATGTTGATGGTGGCAATGCCGCTGATAAAACTTCTTATATATATTGTACATGCATGTATTCATGACTGCAATTACCTTAGTATTGTCAAGTTCAAAGACAAAATTATGTTCAAGCCTTTATTTTAGATCTGGCCCTCTTAACCTACTCAGTTATTAATTCCTGATCTGTAGATTCCTCTCAGTGGCCCCAACTCTGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGAGGATGATCTTGGAAAAGGTATGTTCTGTTCGTCGTTTCAATTTAGTTACATTCTTCACCTCCTTTTCGTTCCTCTTCATTTGATCAACCTACTCAAGTGATTTATCAAACAGATAAAAGAATTGAAAATAAGTTAATTTATGTTCTTGTTATCTTAGCTTCAGTTGTGTTTAATAGAATAAAATATAGTGCTATTAATAAAATTATGGGAAAAAGATATTGTAGTTCCCTTTTATAGATAGAACTGCAATATTAGCTGCTGATAGCGATGTCTGCATCACTTACCCCGAAATTTTTTTGTTCGACTATCAAAATTCAATATTTGTTCTCATTTTTTCTGGTTATGATTATGTAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTATGCAAACATAAAGTTCTTTTTTCTTCTCTCTCAAGAGTCCCGTGTTCTTTTTTCCCCATGCATGCCATGGCATATATCTTTATAATACTGCTTTGGTGATCAATTTGTTCGATTTAAATAGAATACAAGTTATAAACATGGGTGAACTATTCGACTATTTAAATTCTTTCTTATCCCTGGTGGGTTTCATTTCTTTTAATGCTTTCCAGGGGATTTCATCCCTATTTCATATCATCCCAAAGAACAAGAATTTCAGATTTCAAACATCGTTCCATTTCCTCCTCCTCCTTCCCAATTTCATTAGTTAATATTGCAGAAAGAACAAAGTTATTACTTGTTCAAAAAGAACTAACTTGTTACTGGTGACTTGGTGGATATTGAAGGCCTACGGTATACATTACTGAACTGATCTACCTTATCGAATACTGACTGACCTCTGGCTCCACGATGCAAGGAGATTCATAGCTTTATTTCAAATTCTCAGTCCTTATAATCATTTTTCTGTTGTGTATGCCTCATGCCATGTGTGCTCTTTAATATGCAAGGAAGCTGAGTGAATACAGTATGCTTTAATTCAAATTCTCAGCTATGCATAGAGACCATGTGGTTCTCTTGTATATTTTATGAATTGCACAGCTTACTTCATTTATCAGACCCTTTGTGTAGGTAGATATGTGGTCTAAAAGTCTCTGCGCTGGCTATTGTTCTGATAGCCTGGCATGACATTTTTCCACCTTGTAGAAGTACTTTCAATAGAATCTAGTAACTTAGAAATGGGTTAATCAAGTTAAAATACTTCTGCTGAATGCATCAACATAGTTAACGTATAACTGTTCTAAACGCTTACATTAGCAGCTAATCAAACTGCAAACCTATTGCTTTGCTTGAGTGCCATGGTAGTAAACCACTGGCAATAGTAAAATCCAGACATTCCCTATTTGCTTCTAGATGCCTAAATATTGTCTTCTCAATGGTTTTTAATCCAGAATATGTGCTAATTGCTGATACAAGAGAATCTCAATCTTTTTTCTATTTCTCGTCTTTGCAGGTGTTGTCGGGCTGACTCCCGTGTAATGGCAACATACGAACTGCTAGCCTACAAGGTCATGAGCTATACGGGCACTGTTGGCAGCTTGTTGTCACCCGCTTCTCCACAGGCATGAGTTCCTTCTCTCTTGCCTAGCACATATATTGCCTTGGAAAGACGGTTCAATTGTTTTCACGTTGATATCTGTTTTACTGTGGTTTCCATTAGTTGAATAAAATTGACTTGCTACTTCTGAG

mRNA sequence

TCTCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACCAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTCGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGACCACATTTCAATCCTAATAAGTTAACTCATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGAGTAGCGGAGGCAACCATTGTAGATAATCAGATTCCTCTCAGTGGCCCCAACTCTGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGAGGATGATCTTGGAAAAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTGTTGTCGGGCTGACTCCCGTGTAATGGCAACATACGAACTGCTAGCCTACAAGGTCATGAGCTATACGGGCACTGTTGGCAGCTTGTTGTCACCCGCTTCTCCACAGGCATGAGTTCCTTCTCTCTTGCCTAGCACATATATTGCCTTGGAAAGACGGTTCAATTGTTTTCACGTTGATATCTGTTTTACTGTGGTTTCCATTAGTTGAATAAAATTGACTTGCTACTTCTGAG

Coding sequence (CDS)

TCTCCCTTCTCAATTTCTTCCCCTCCGCCTTCCCTAATCTCCTCCTTCCATGGCGCCTCTCTCAAGCTACCTCGCCACTCCCTCTCCCTAGCAGCCTCCGTCGCCCCCAAGCCTTTTGTTGTCGTTGCCGCTACCAAGAAAGCCGTCGCCGTTCTCAAGGGTACTTCCAATGTCGAAGGCGTCGTCACGCTGACCCAAGAAGACGATGGACCACATTTCAATCCTAATAAGTTAACTCATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAAGGCTGATGGAGTAGCGGAGGCAACCATTGTAGATAATCAGATTCCTCTCAGTGGCCCCAACTCTGTAGTTGGAAGAGCCTTTGTGGTACATGAGCTTGAGGATGATCTTGGAAAAGGAGGTCATGAACTCAGTTCAACCACAGGCAACGCTGGTGGAAGATTGGCATGTGGTGTTGTCGGGCTGACTCCCGTGTAA

Protein sequence

SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEGVVTLTQEDDGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTTGNAGGRLACGVVGLTPV
Homology
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BLAST of Carg02593 vs. NCBI nr
Match: KAG7035977.1 (Superoxide dismutase [Cu-Zn], chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316.6 bits (810), Expect = 1.2e-82
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 

Query: 1   SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 60
           SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG
Sbjct: 1   SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 60

Query: 61  VVTLTQEDDGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNS 120
           VVTLTQEDDGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNS
Sbjct: 61  VVTLTQEDDGPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNS 120

Query: 121 VVGRAFVVHELEDDLGKGGHELSSTTGNAGGRLACGVVGLTPV 164
           VVGRAFVVHELEDDLGKGGHELSSTTGNAGGRLACGVVGLTPV
Sbjct: 121 VVGRAFVVHELEDDLGKGGHELSSTTGNAGGRLACGVVGLTPV 163

[Close]
BLAST of Carg02593 vs. NCBI nr
Match: XP_022958658.1 (superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita moschata] >XP_022996071.1 superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita maxima] >KAG6606030.1 Superoxide dismutase [Cu-Zn], chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299.3 bits (765), Expect = 2.0e-77
Identity = 163/197 (82.74%), Postives = 163/197 (82.74%), Query Frame = 0 

Query: 1   SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 60
           SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG
Sbjct: 25  SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 84

Query: 61  VVTLTQEDD----------------------------------GPHFNPNKLTHGAPEDE 120
           VVTLTQEDD                                  GPHFNPNKLTHGAPEDE
Sbjct: 85  VVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDE 144

Query: 121 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 164
           IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT
Sbjct: 145 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 204

[Close]
BLAST of Carg02593 vs. NCBI nr
Match: XP_023534101.1 (superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 162/197 (82.23%), Postives = 162/197 (82.23%), Query Frame = 0 

Query: 1   SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 60
           SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG
Sbjct: 25  SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 84

Query: 61  VVTLTQEDD----------------------------------GPHFNPNKLTHGAPEDE 120
           VVTLTQEDD                                  GPHFNPNKLTHGAPEDE
Sbjct: 85  VVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDE 144

Query: 121 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 164
           IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHEL DDLGKGGHELSSTT
Sbjct: 145 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELADDLGKGGHELSSTT 204

[Close]
BLAST of Carg02593 vs. NCBI nr
Match: AWW05327.1 (superoxide dismutase [Cu-Zn] 1 [Cucurbita pepo])

HSP 1 Score: 295.8 bits (756), Expect = 2.3e-76
Identity = 161/197 (81.73%), Postives = 162/197 (82.23%), Query Frame = 0 

Query: 1   SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 60
           SPFSIS+PPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG
Sbjct: 25  SPFSISAPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 84

Query: 61  VVTLTQEDD----------------------------------GPHFNPNKLTHGAPEDE 120
           VVTLTQEDD                                  GPHFNPNKLTHGAPEDE
Sbjct: 85  VVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDE 144

Query: 121 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 164
           IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHEL DDLGKGGHELSSTT
Sbjct: 145 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELADDLGKGGHELSSTT 204

[Close]
BLAST of Carg02593 vs. NCBI nr
Match: APO14279.1 (superoxide dismutase 3 [Luffa aegyptiaca])

HSP 1 Score: 282.3 bits (721), Expect = 2.6e-72
Identity = 154/196 (78.57%), Postives = 155/196 (79.08%), Query Frame = 0 

Query: 2   PFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEGV 61
           PFS SSPPPSL SSFHGASLKLPRHSLSLAAS APKP  VVAATKKAVAVLKGTSNV+GV
Sbjct: 26  PFSNSSPPPSLTSSFHGASLKLPRHSLSLAASAAPKPLAVVAATKKAVAVLKGTSNVDGV 85

Query: 62  VTLTQEDDGP----------------------------------HFNPNKLTHGAPEDEI 121
           VTLTQEDDGP                                  HFNPNKLTHGAPEDEI
Sbjct: 86  VTLTQEDDGPTTVNVRVTGLAEGLHGFHLHEYGDTTNGCISTGAHFNPNKLTHGAPEDEI 145

Query: 122 RHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTTG 164
           RHAGDLGNIVA ADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELS TTG
Sbjct: 146 RHAGDLGNIVANADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLTTG 205

[Close]
BLAST of Carg02593 vs. ExPASy Swiss-Prot
Match: P10792 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida OX=4102 GN=SODCP PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.4e-60
Identity = 130/197 (65.99%), Postives = 142/197 (72.08%), Query Frame = 0 

Query: 4   SISSPPPSLISSFHGASLKLPR---HSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 63
           S ++  PSL SSFHG SLK+      SL+L++  +PKPF+V AATKKAVAVLKGTSNVEG
Sbjct: 23  SNTNSAPSLSSSFHGVSLKVKSKTPQSLTLSSVTSPKPFIVFAATKKAVAVLKGTSNVEG 82

Query: 64  VVTLTQEDD----------------------------------GPHFNPNKLTHGAPEDE 123
           VVTLTQ+DD                                  GPHFNPN LTHGAP DE
Sbjct: 83  VVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDE 142

Query: 124 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 164
           +RHAGDLGNI A A GVAEAT+VDNQIPLSGPNSVVGRA VVHELEDDLGKGGHELS TT
Sbjct: 143 VRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTT 202

[Close]
BLAST of Carg02593 vs. ExPASy Swiss-Prot
Match: O65199 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera OX=29760 GN=SODCP PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 6.9e-60
Identity = 126/191 (65.97%), Postives = 138/191 (72.25%), Query Frame = 0 

Query: 7   SPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEGVVTLTQ 66
           +P P L S FHG SLKL R S+ LA   APKP  VVA TKKAVAVLKGTS+VEGVVTL+Q
Sbjct: 24  NPSPQLHSQFHGLSLKLTRQSIPLA--TAPKPLSVVAVTKKAVAVLKGTSSVEGVVTLSQ 83

Query: 67  EDDGP----------------------------------HFNPNKLTHGAPEDEIRHAGD 126
           EDDGP                                  HFNPN +THGAPED++RHAGD
Sbjct: 84  EDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGD 143

Query: 127 LGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTTGNAGGR 164
           LGNI+A A+GVAEATIVD QIPLSGPN+V+GRA VVHELEDDLGKGGHELS TTGNAGGR
Sbjct: 144 LGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGR 203

[Close]
BLAST of Carg02593 vs. ExPASy Swiss-Prot
Match: P07505 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea OX=3562 GN=SODCP PE=1 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-59
Identity = 136/204 (66.67%), Postives = 144/204 (70.59%), Query Frame = 0 

Query: 1   SPFSISSPPPSL-----ISSFHGASLKL--PRHSLSLAASVAPKPFVVVAATKKAVAVLK 60
           SPFS S+P  +L      SSF+G S KL     SLSL+ S A KP  +VAATKKAVAVLK
Sbjct: 20  SPFS-STPTNALSSSLQSSSFNGLSFKLSPTTQSLSLSTSAASKPLTIVAATKKAVAVLK 79

Query: 61  GTSNVEGVVTLTQEDD----------------------------------GPHFNPNKLT 120
           GTSNVEGVVTLTQEDD                                  GPHFNP+K T
Sbjct: 80  GTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKT 139

Query: 121 HGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGG 164
           HGAPEDE+RHAGDLGNIVA  DGVAEATIVDNQIPL+GPNSVVGRA VVHELEDDLGKGG
Sbjct: 140 HGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGG 199

[Close]
BLAST of Carg02593 vs. ExPASy Swiss-Prot
Match: P14831 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum OX=4081 GN=SODCP.2 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-58
Identity = 129/199 (64.82%), Postives = 138/199 (69.35%), Query Frame = 0 

Query: 2   PFSISSPPPSLISSFHGASLKLPR---HSLSLAASVAPKPFVVVAATKKAVAVLKGTSNV 61
           P S SS  P++ SSF G SL +      SL+L A   PKP  V AATKKAVAVLKG SNV
Sbjct: 19  PISSSSSSPNINSSFLGVSLNVNAKFGQSLTLYAVTTPKPLTVFAATKKAVAVLKGNSNV 78

Query: 62  EGVVTLTQEDDGP----------------------------------HFNPNKLTHGAPE 121
           EGVVTL+Q+DDGP                                  HFNPNKLTHGAP 
Sbjct: 79  EGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPG 138

Query: 122 DEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSS 164
           DEIRHAGDLGNIVA ADGVAE T+VDNQIPL+GPNSVVGRA VVHELEDDLGKGGHELS 
Sbjct: 139 DEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSL 198

[Close]
BLAST of Carg02593 vs. ExPASy Swiss-Prot
Match: O04997 (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra OX=59294 GN=SODCP PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.9e-58
Identity = 133/202 (65.84%), Postives = 144/202 (71.29%), Query Frame = 0 

Query: 3   FSISSPPPSL---ISSFHGASLK--LPRHSLSL--AASVAPKPFVVVAATKKAVAVLKGT 62
           F IS+P  ++    SSFHG SLK  + R SL+L  AAS APKP  V AATKKAVAVLKGT
Sbjct: 19  FPISNPNTAVSLPSSSFHGVSLKSTINRQSLTLSAAASAAPKPLTVFAATKKAVAVLKGT 78

Query: 63  SNVEGVVTLTQEDD----------------------------------GPHFNPNKLTHG 122
           S+VEGVVTLTQE+D                                  GPHFNPN  THG
Sbjct: 79  SSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHG 138

Query: 123 APEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHE 164
           APEDE RHAGDLGNI+A ADGVAEATIVDNQIPL+GPN+VVGRAFVVHEL DDLGKGGHE
Sbjct: 139 APEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHE 198

[Close]
BLAST of Carg02593 vs. ExPASy TrEMBL
Match: A0A6J1K3P0 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111491386 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.9e-78
Identity = 163/197 (82.74%), Postives = 163/197 (82.74%), Query Frame = 0 

Query: 1   SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 60
           SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG
Sbjct: 25  SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 84

Query: 61  VVTLTQEDD----------------------------------GPHFNPNKLTHGAPEDE 120
           VVTLTQEDD                                  GPHFNPNKLTHGAPEDE
Sbjct: 85  VVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDE 144

Query: 121 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 164
           IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT
Sbjct: 145 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 204

[Close]
BLAST of Carg02593 vs. ExPASy TrEMBL
Match: A0A6J1H3P6 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111459815 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.9e-78
Identity = 163/197 (82.74%), Postives = 163/197 (82.74%), Query Frame = 0 

Query: 1   SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 60
           SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG
Sbjct: 25  SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 84

Query: 61  VVTLTQEDD----------------------------------GPHFNPNKLTHGAPEDE 120
           VVTLTQEDD                                  GPHFNPNKLTHGAPEDE
Sbjct: 85  VVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDE 144

Query: 121 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 164
           IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT
Sbjct: 145 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 204

[Close]
BLAST of Carg02593 vs. ExPASy TrEMBL
Match: A0A2Z4GT64 (Superoxide dismutase [Cu-Zn] OS=Cucurbita pepo OX=3663 PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 161/197 (81.73%), Postives = 162/197 (82.23%), Query Frame = 0 

Query: 1   SPFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 60
           SPFSIS+PPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG
Sbjct: 25  SPFSISAPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEG 84

Query: 61  VVTLTQEDD----------------------------------GPHFNPNKLTHGAPEDE 120
           VVTLTQEDD                                  GPHFNPNKLTHGAPEDE
Sbjct: 85  VVTLTQEDDGPTTVNVRITGLTEGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDE 144

Query: 121 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTT 164
           IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHEL DDLGKGGHELSSTT
Sbjct: 145 IRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELADDLGKGGHELSSTT 204

[Close]
BLAST of Carg02593 vs. ExPASy TrEMBL
Match: A0A1L5JHV7 (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.2e-72
Identity = 154/196 (78.57%), Postives = 155/196 (79.08%), Query Frame = 0 

Query: 2   PFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEGV 61
           PFS SSPPPSL SSFHGASLKLPRHSLSLAAS APKP  VVAATKKAVAVLKGTSNV+GV
Sbjct: 26  PFSNSSPPPSLTSSFHGASLKLPRHSLSLAASAAPKPLAVVAATKKAVAVLKGTSNVDGV 85

Query: 62  VTLTQEDDGP----------------------------------HFNPNKLTHGAPEDEI 121
           VTLTQEDDGP                                  HFNPNKLTHGAPEDEI
Sbjct: 86  VTLTQEDDGPTTVNVRVTGLAEGLHGFHLHEYGDTTNGCISTGAHFNPNKLTHGAPEDEI 145

Query: 122 RHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTTG 164
           RHAGDLGNIVA ADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELS TTG
Sbjct: 146 RHAGDLGNIVANADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLTTG 205

[Close]
BLAST of Carg02593 vs. ExPASy TrEMBL
Match: A0A1S3CNS3 (Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103503040 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68
Identity = 149/196 (76.02%), Postives = 152/196 (77.55%), Query Frame = 0 

Query: 2   PFSISSPPPSLISSFHGASLKLPRHSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEGV 61
           PFS SS   SL SSFHGASLKLPRHSLSLAASVAPKP  VVAA+KKAVAVLKGTS+VEGV
Sbjct: 26  PFSNSSSSLSLTSSFHGASLKLPRHSLSLAASVAPKPLAVVAASKKAVAVLKGTSDVEGV 85

Query: 62  VTLTQEDDGP----------------------------------HFNPNKLTHGAPEDEI 121
           VTLTQEDDGP                                  HFNPNKLTHGAPEDEI
Sbjct: 86  VTLTQEDDGPTSVNVRITGLTPGPHGFHLHEFGDTTNGCISTGAHFNPNKLTHGAPEDEI 145

Query: 122 RHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTTG 164
           RHAGDLGNI+A ADGVAEATIVDNQIPLSGPNSVVGRAFVVHEL DDLGKGGHELS TTG
Sbjct: 146 RHAGDLGNIIANADGVAEATIVDNQIPLSGPNSVVGRAFVVHELADDLGKGGHELSLTTG 205

[Close]
BLAST of Carg02593 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-55
Identity = 123/196 (62.76%), Postives = 133/196 (67.86%), Query Frame = 0 

Query: 6   SSPPPSLISSFHGASL---KLPR-HSLSLAASVAPKPFVVVAATKKAVAVLKGTSNVEGV 65
           SS P +L SSF G SL    L R  S+S A     K   VV+A KKAVAVLKGTS+VEGV
Sbjct: 21  SSNPSTLRSSFRGVSLNNNNLHRLQSVSFAVKAPSKALTVVSAAKKAVAVLKGTSDVEGV 80

Query: 66  VTLTQEDD----------------------------------GPHFNPNKLTHGAPEDEI 125
           VTLTQ+D                                   GPHFNPN +THGAPEDE 
Sbjct: 81  VTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDEC 140

Query: 126 RHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSSTTG 164
           RHAGDLGNI A ADGVAE TIVDNQIPL+GPNSVVGRAFVVHEL+DDLGKGGHELS TTG
Sbjct: 141 RHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTG 200

[Close]
BLAST of Carg02593 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-33
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0 

Query: 70  GPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVH 129
           GPHFNP+  THGAPED  RHAGDLGNI    DG A  TI D QIPL+GPNS+VGRA VVH
Sbjct: 60  GPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVH 119

Query: 130 ELEDDLGKGGHELSSTTGNAGGRLACGVVGL 161
              DDLGKGGHELS  TGNAGGR+ACG++GL
Sbjct: 120 ADPDDLGKGGHELSLATGNAGGRVACGIIGL 150

[Close]
BLAST of Carg02593 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-33
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0 

Query: 70  GPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVH 129
           GPHFNP+  THGAPED  RHAGDLGNI    DG A  TI D QIPL+GPNS+VGRA VVH
Sbjct: 60  GPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVH 119

Query: 130 ELEDDLGKGGHELSSTTGNAGGRLACGVVGL 161
              DDLGKGGHELS  TGNAGGR+ACG++GL
Sbjct: 120 ADPDDLGKGGHELSLATGNAGGRVACGIIGL 150

[Close]
BLAST of Carg02593 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 0 

Query: 70  GPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVH 129
           GPHFNP    HG P +E RHAGDLGNI+A ++GVAE  I D  IPLSG  S++GRA VVH
Sbjct: 66  GPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVH 125

Query: 130 ELEDDLGKGGHELSSTTGNAGGRLACGVVGL 161
              DDLGKGGH+LS +TGNAG R+ CG++GL
Sbjct: 126 ADPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156

[Close]
BLAST of Carg02593 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 91.3 bits (225), Expect = 7.9e-19
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 70  GPHFNPNKLTHGAPEDEIRHAGDLGNIVAKADGVAEATIVDNQIPLSGPNSVVGRAFVVH 129
           GPHFNP    HG P +E RHAGDLGNI+A ++GVAE  I D  IPLSG  S++GRA VVH
Sbjct: 66  GPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVH 125

Query: 130 ELEDDLGKG 139
              DDLGKG
Sbjct: 126 ADPDDLGKG 134

The following BLAST results are available for this feature:
BLAST of Carg02593 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035977.11.2e-82100.00Superoxide dismutase [Cu-Zn], chloroplastic, partial [Cucurbita argyrosperma sub... [more]
XP_022958658.12.0e-7782.74superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita moschata] >XP_022996071.1... [more]
XP_023534101.11.0e-7682.23superoxide dismutase [Cu-Zn], chloroplastic [Cucurbita pepo subsp. pepo][more]
AWW05327.12.3e-7681.73superoxide dismutase [Cu-Zn] 1 [Cucurbita pepo][more]
APO14279.12.6e-7278.57superoxide dismutase 3 [Luffa aegyptiaca][more]
BLAST of Carg02593 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P107922.4e-6065.99Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida OX=4102 GN=SODCP ... [more]
O651996.9e-6065.97Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera OX=29760 GN=SODCP ... [more]
P075051.2e-5966.67Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea OX=3562 GN=SODC... [more]
P148311.7e-5864.82Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum OX=4081 GN=S... [more]
O049972.9e-5865.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra O... [more]
BLAST of Carg02593 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K3P09.9e-7882.74Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111491386 PE=3 SV... [more]
A0A6J1H3P69.9e-7882.74Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111459815 PE=3 ... [more]
A0A2Z4GT641.1e-7681.73Superoxide dismutase [Cu-Zn] OS=Cucurbita pepo OX=3663 PE=2 SV=1[more]
A0A1L5JHV71.2e-7278.57Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1[more]
A0A1S3CNS31.4e-6876.02Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103503040 PE=3 SV=1[more]
BLAST of Carg02593 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G28190.14.0e-5562.76copper/zinc superoxide dismutase 2 [more]
AT1G08830.14.3e-3372.53copper/zinc superoxide dismutase 1 [more]
AT1G08830.24.3e-3372.53copper/zinc superoxide dismutase 1 [more]
AT5G18100.11.1e-2863.74copper/zinc superoxide dismutase 3 [more]
AT5G18100.27.9e-1963.77copper/zinc superoxide dismutase 3 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 133..159
score: 75.3
coord: 89..98
score: 76.39
coord: 108..130
score: 60.6
coord: 53..75
score: 32.18
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 67..158
e-value: 7.5E-28
score: 97.4
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 46..155
e-value: 1.14545E-38
score: 126.606
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3D2.60.40.200Superoxide dismutase, copper/zinc binding domaincoord: 69..162
e-value: 1.5E-38
score: 134.2
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 47..160
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 70..161
NoneNo IPR availablePANTHERPTHR10003:SF87SUPEROXIDE DISMUTASE [CU-ZN]coord: 70..161
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00332SOD_CU_ZN_2coord: 147..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02593-RACarg02593-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0090378 seed trichome elongation
biological_process GO:0006801 superoxide metabolic process
cellular_component GO:0009536 plastid
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0046872 metal ion binding