Carg02588 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02588
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 7943300 .. 7943855 (-)
RNA-Seq Expression	Carg02588
Synteny	Carg02588

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACCGATGAAGAAGATCAAGCATGGTTCCTTGGAGGAAAGGGAGCAATCAGTTTCAAGCAGCGATGGTGCCCCTTGCCGTACCCGCCATGTCGTTCATCGGCGTGCCTCTTTCCTGACAATTATTCCATGATGTCCAGCAATTGTGTTGCTAAAGATTTGCTAGCAGAATCATTCAGTGACTCGACTTGGAGCTGCTCCATCTGGGTTCGTTGTTCTTTTCCTGTAAGGGGATGCCCTCCACCTGTTTGTAAAAATGCCCCTTCGTATTTCCTGATATTTTTTTTTAATGATTTTCGAGCCTTGTGGGTGCTGTATGGTTTTTAAATCATTTGATTTGGTATTGCAATACTTAGTGATTGAAGTTTTTGGTGTCTTTTAGCCGTATTTCGTCTGGTTTCATAGGATCCAAAATACATCCATATCGTCGAGTAGAGTGGTTGTGGTGGTTGAGTGGAGTCAAGTAGAGTGGTTGTTTCAAGTTTAAATTTTCACCTGTCAGTACTGTAGGCATCAAGGAGAAGTCCAAAGCTACTCGGCACTTGAAAGAATAA

mRNA sequence

ATGAGACCGATGAAGAAGATCAAGCATGGTTCCTTGGAGGAAAGGGAGCAATCAGTTTCAAGCAGCGATGGTGCCCCTTGCCGTACCCGCCATGTCAATCATTCAGTGACTCGACTTGGAGCTGCTCCATCTGGGTTCGTTGTTCTTTTCCTTACTGTAGGCATCAAGGAGAAGTCCAAAGCTACTCGGCACTTGAAAGAATAA

Coding sequence (CDS)

ATGAGACCGATGAAGAAGATCAAGCATGGTTCCTTGGAGGAAAGGGAGCAATCAGTTTCAAGCAGCGATGGTGCCCCTTGCCGTACCCGCCATGTCAATCATTCAGTGACTCGACTTGGAGCTGCTCCATCTGGGTTCGTTGTTCTTTTCCTTACTGTAGGCATCAAGGAGAAGTCCAAAGCTACTCGGCACTTGAAAGAATAA

Protein sequence

MRPMKKIKHGSLEEREQSVSSSDGAPCRTRHVNHSVTRLGAAPSGFVVLFLTVGIKEKSKATRHLKE

Homology

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BLAST of Carg02588 vs. NCBI nr
Match: KAG7035982.1 (hypothetical protein SDJN02_02782, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 2.7e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MRPMKKIKHGSLEEREQSVSSSDGAPCRTRHVNHSVTRLGAAPSGFVVLFLTVGIKEKSK 60
          MRPMKKIKHGSLEEREQSVSSSDGAPCRTRHVNHSVTRLGAAPSGFVVLFLTVGIKEKSK
Sbjct: 1  MRPMKKIKHGSLEEREQSVSSSDGAPCRTRHVNHSVTRLGAAPSGFVVLFLTVGIKEKSK 60

Query: 61 ATRHLKE 68
          ATRHLKE
Sbjct: 61 ATRHLKE 67

The following BLAST results are available for this feature:

BLAST of Carg02588 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035982.1	2.7e-28	100.00	hypothetical protein SDJN02_02782, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg02588 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02588 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02588 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02588-RA	Carg02588-RA	mRNA