Carg02571 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02571
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 8021241 .. 8021522 (+)
RNA-Seq ExpressionCarg02571
SyntenyCarg02571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGAATAATGAGCTGGGTCTATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGTCTTCTCAAGGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

mRNA sequence

ATGAGCAGAATAATGAGCTGGGTCTATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGTCTTCTCAAGGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

Coding sequence (CDS)

ATGAGCAGAATAATGAGCTGGGTCTATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGTCTTCTCAAGGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

Protein sequence

MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY
Homology
BLAST of Carg02571 vs. NCBI nr
Match: KAG7035999.1 (hypothetical protein SDJN02_02799, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.8 bits (499), Expect = 8.1e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60
          MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL
Sbjct: 1  MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY
Sbjct: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 93

BLAST of Carg02571 vs. NCBI nr
Match: KAG6606051.1 (hypothetical protein SDJN03_03368, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.3 bits (477), Expect = 2.9e-44
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0

Query: 1  MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60
          MSRIMSWVYAARCAVIGAEQP  QQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL
Sbjct: 1  MSRIMSWVYAARCAVIGAEQP--QQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY
Sbjct: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 91

BLAST of Carg02571 vs. NCBI nr
Match: XP_022958391.1 (uncharacterized protein LOC111459627 [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0

Query: 1  MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60
          MSRIMSWV AARCAVIGAEQP QQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL
Sbjct: 1  MSRIMSWVDAARCAVIGAEQP-QQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY
Sbjct: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 92

BLAST of Carg02571 vs. NCBI nr
Match: KAE8647840.1 (hypothetical protein Csa_000107 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 0

Query: 5  MSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLL 64
          MS   AARC++IG+E  Q+        SK FD FQMPLHYP+Y+RSDYEGM EWKLDCLL
Sbjct: 1  MSCADAARCSMIGSEHQQRS-------SKAFDQFQMPLHYPRYRRSDYEGMPEWKLDCLL 60

Query: 65 KEYGLPVAGDVAQKRKFAMGAFLWPSEM 93
          KEYGLPV GDVAQKRKFAMGAFLWP E+
Sbjct: 61 KEYGLPVVGDVAQKRKFAMGAFLWPCEI 81

BLAST of Carg02571 vs. NCBI nr
Match: KAA0042696.1 (hypothetical protein E6C27_scaffold44G001940 [Cucumis melo var. makuwa] >TYK06100.1 hypothetical protein E5676_scaffold376G002010 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 63/89 (70.79%), Postives = 69/89 (77.53%), Query Frame = 0

Query: 5  MSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLL 64
          MS   AARC++IG+E  Q+        SK  D FQMPLHYP+YKRSDYE M EWKLDCLL
Sbjct: 1  MSCADAARCSMIGSEHQQRS-------SKALDQFQMPLHYPRYKRSDYEDMPEWKLDCLL 60

Query: 65 KEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          KEYGLP+ GDVAQKRKFAMGAFLWP EMY
Sbjct: 61 KEYGLPIVGDVAQKRKFAMGAFLWPCEMY 82

BLAST of Carg02571 vs. ExPASy TrEMBL
Match: A0A6J1H1Y5 (uncharacterized protein LOC111459627 OS=Cucurbita moschata OX=3662 GN=LOC111459627 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0

Query: 1  MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60
          MSRIMSWV AARCAVIGAEQP QQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL
Sbjct: 1  MSRIMSWVDAARCAVIGAEQP-QQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY
Sbjct: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 92

BLAST of Carg02571 vs. ExPASy TrEMBL
Match: A0A0A0KMG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151500 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 68/93 (73.12%), Postives = 74/93 (79.57%), Query Frame = 0

Query: 1  MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60
          MS IMS   AARC++IG+E  Q+        SK FD FQMPLHYP+Y+RSDYEGM EWKL
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS-------SKAFDQFQMPLHYPRYRRSDYEGMPEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          DCLLKEYGLPV GDVAQKRKFAMGAFLWP EMY
Sbjct: 61 DCLLKEYGLPVVGDVAQKRKFAMGAFLWPCEMY 86

BLAST of Carg02571 vs. ExPASy TrEMBL
Match: A0A5D3C447 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002010 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-27
Identity = 63/89 (70.79%), Postives = 69/89 (77.53%), Query Frame = 0

Query: 5  MSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLL 64
          MS   AARC++IG+E  Q+        SK  D FQMPLHYP+YKRSDYE M EWKLDCLL
Sbjct: 1  MSCADAARCSMIGSEHQQRS-------SKALDQFQMPLHYPRYKRSDYEDMPEWKLDCLL 60

Query: 65 KEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          KEYGLP+ GDVAQKRKFAMGAFLWP EMY
Sbjct: 61 KEYGLPIVGDVAQKRKFAMGAFLWPCEMY 82

BLAST of Carg02571 vs. ExPASy TrEMBL
Match: A0A6J1CXF4 (uncharacterized protein LOC111015321 OS=Momordica charantia OX=3673 GN=LOC111015321 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.5e-25
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 24 QQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAM 83
          +QQQQRV SKQF  FQMPLHYP+YK+SDYE M EWKLDCLLKEYGLP+ GDVAQKRKFAM
Sbjct: 16 EQQQQRV-SKQFHQFQMPLHYPRYKKSDYEAMPEWKLDCLLKEYGLPIVGDVAQKRKFAM 75

Query: 84 GAFLWPSEMY 94
          GAFLWP + Y
Sbjct: 76 GAFLWPCDQY 84

BLAST of Carg02571 vs. ExPASy TrEMBL
Match: A0A6I9T0H3 (uncharacterized protein LOC105158521 OS=Sesamum indicum OX=4182 GN=LOC105158521 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.5e-22
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 10 AARCAVI-GAEQPQQQQQQQ---RVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLK 69
          +A CA + G  +P   QQQQ    V++ +   FQMPLHYP+YK+SDYE M EW+LDCLLK
Sbjct: 8  SAACATVNGGVRPNGHQQQQLVSSVMNTKGCGFQMPLHYPRYKKSDYEKMPEWQLDCLLK 67

Query: 70 EYGLPVAGDVAQKRKFAMGAFLWPSEM 93
          EYGLPVAGDV QKRKFAMGAFLWP ++
Sbjct: 68 EYGLPVAGDVHQKRKFAMGAFLWPDQL 94

BLAST of Carg02571 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-19
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 34 QFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 92
          Q   FQ+PLHYPKY +SDYE M EW+LD LL+EYGLPV GD  +KRKFA+GAFLW SE
Sbjct: 41 QSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

BLAST of Carg02571 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-15
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 38 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPS 91
          F+MPLHYP+Y + DY+ M EWKLD +L +YGL   GD+A KR FA+GAFLW S
Sbjct: 32 FRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLWIS 84

BLAST of Carg02571 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-13
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 38  FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEM 93
           FQ+PLHYPKY +SDYE M + +LD LLK+YG    G +  KR FA+ +FLWP ++
Sbjct: 47  FQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

BLAST of Carg02571 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-12
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 38 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGD--VAQKRKFAMGAFLWP 90
          F+MPLHYP+Y + DYE M EW+LD LL EYGL    D  + +KR FA+  F+WP
Sbjct: 36 FKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

BLAST of Carg02571 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-10
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 38  FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPV-AGDVAQKRKFAMGAFLW 89
           FQMPL YP Y +  Y+ M+E +LD LLK YGLP   G+++ K++FA+GAFLW
Sbjct: 57  FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7035999.18.1e-47100.00hypothetical protein SDJN02_02799, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6606051.12.9e-4497.85hypothetical protein SDJN03_03368, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022958391.11.1e-4397.85uncharacterized protein LOC111459627 [Cucurbita moschata][more]
KAE8647840.13.2e-2771.59hypothetical protein Csa_000107 [Cucumis sativus][more]
KAA0042696.13.2e-2770.79hypothetical protein E6C27_scaffold44G001940 [Cucumis melo var. makuwa] >TYK0610... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H1Y55.3e-4497.85uncharacterized protein LOC111459627 OS=Cucurbita moschata OX=3662 GN=LOC1114596... [more]
A0A0A0KMG04.4e-3073.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151500 PE=4 SV=1[more]
A0A5D3C4471.6e-2770.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CXF42.5e-2581.43uncharacterized protein LOC111015321 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6I9T0H37.5e-2264.37uncharacterized protein LOC105158521 OS=Sesamum indicum OX=4182 GN=LOC105158521 ... [more]
Match NameE-valueIdentityDescription
AT5G41761.14.5e-1970.69unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G55570.12.3e-1562.26unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G55620.12.8e-1354.55unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G09950.14.1e-1255.56unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G11405.13.8e-1055.77unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513:SF31SUBFAMILY NOT NAMEDcoord: 22..91
NoneNo IPR availablePANTHERPTHR33513OS06G0523300 PROTEINcoord: 22..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02571-RACarg02571-RAmRNA