Carg02560 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02560
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LEA_2 domain-containing protein
Location	Carg_Chr02: 8093184 .. 8093459 (-)
RNA-Seq Expression	Carg02560
Synteny	Carg02560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAGAAAGACCAGGTCAAACCCTTGGCTTCACCCGCCACCCATCTCCGGAGCGACGACGATCAGTTTCTTCCCCCTCCGGCCAAGCTCCGCCTCCACAGGAACAAATACATCATGTGCTCCGGCTGCTTTGCCGCACTCCTCTTGATCCTCGCCGTTATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATCTCAAAATCGATAAGCTCTCGTTTTCAAATGCTACTTCAAGTAAGTTTAACATTAGAAGAATTTGA

mRNA sequence

ATGGCCCAGAAAGACCAGGTCAAACCCTTGGCTTCACCCGCCACCCATCTCCGGAGCGACGACGATCAGTTTCTTCCCCCTCCGGCCAAGCTCCGCCTCCACAGGAACAAATACATCATGTGCTCCGGCTGCTTTGCCGCACTCCTCTTGATCCTCGCCGTTATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATCTCAAAATCGATAAGCTCTCGTTTTCAAATGCTACTTCAAGTAAGTTTAACATTAGAAGAATTTGA

Coding sequence (CDS)

ATGGCCCAGAAAGACCAGGTCAAACCCTTGGCTTCACCCGCCACCCATCTCCGGAGCGACGACGATCAGTTTCTTCCCCCTCCGGCCAAGCTCCGCCTCCACAGGAACAAATACATCATGTGCTCCGGCTGCTTTGCCGCACTCCTCTTGATCCTCGCCGTTATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATCTCAAAATCGATAAGCTCTCGTTTTCAAATGCTACTTCAAGTAAGTTTAACATTAGAAGAATTTGA

Protein sequence

MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSSKFNIRRI

Homology

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: KAG7036010.1 (hypothetical protein SDJN02_02810, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
          MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60

Query: 61 FTVLHIKTPDLKIDKLSFSNATSSKFNIRRI 92
          FTVLHIKTPDLKIDKLSFSNATSSKFNIRRI
Sbjct: 61 FTVLHIKTPDLKIDKLSFSNATSSKFNIRRI 91

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: KAG6606064.1 (hypothetical protein SDJN03_03381, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.7 bits (413), Expect = 7.5e-37
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
          MA+KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 1  MAEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60

Query: 61 FTVLHIKTPDLKIDKLSFSNATSS 85
          FTVLHIKTPDLKIDKLSFSNATS+
Sbjct: 61 FTVLHIKTPDLKIDKLSFSNATSN 84

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: XP_022958536.1 (uncharacterized protein LOC111459739 [Cucurbita moschata])

HSP 1 Score: 163.7 bits (413), Expect = 7.5e-37
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
           MA+KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 214 MAEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 273

Query: 61  FTVLHIKTPDLKIDKLSFSNATSS 85
           FTVLHIKTPDLKIDKLSFSNATS+
Sbjct: 274 FTVLHIKTPDLKIDKLSFSNATSN 297

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: XP_023532981.1 (uncharacterized protein LOC111794996 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
           MA+KDQVKPLASPATHLRSDDD FLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 201 MAEKDQVKPLASPATHLRSDDDHFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 260

Query: 61  FTVLHIKTPDLKIDKLSFSNATSS 85
           FTVLHIKTPDLKIDKLSFSNATS+
Sbjct: 261 FTVLHIKTPDLKIDKLSFSNATSN 284

[Close]

BLAST of Carg02560 vs. NCBI nr
Match: XP_022995815.1 (uncharacterized protein LOC111491239 [Cucurbita maxima])

HSP 1 Score: 160.2 bits (404), Expect = 8.3e-36
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
          M +KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 1  MPEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60

Query: 61 FTVLHIKTPDLKIDKLSFSNATSS 85
          FTVLHIKTPDLKIDKLSFSN TS+
Sbjct: 61 FTVLHIKTPDLKIDKLSFSNTTSN 84

[Close]

BLAST of Carg02560 vs. ExPASy TrEMBL
Match: A0A6J1H2C0 (uncharacterized protein LOC111459739 OS=Cucurbita moschata OX=3662 GN=LOC111459739 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
           MA+KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 214 MAEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 273

Query: 61  FTVLHIKTPDLKIDKLSFSNATSS 85
           FTVLHIKTPDLKIDKLSFSNATS+
Sbjct: 274 FTVLHIKTPDLKIDKLSFSNATSN 297

[Close]

BLAST of Carg02560 vs. ExPASy TrEMBL
Match: A0A6J1K4Z4 (uncharacterized protein LOC111491239 OS=Cucurbita maxima OX=3661 GN=LOC111491239 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
          M +KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG
Sbjct: 1  MPEKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60

Query: 61 FTVLHIKTPDLKIDKLSFSNATSS 85
          FTVLHIKTPDLKIDKLSFSN TS+
Sbjct: 61 FTVLHIKTPDLKIDKLSFSNTTSN 84

[Close]

BLAST of Carg02560 vs. ExPASy TrEMBL
Match: A0A0A0KMH1 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152140 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.4e-26
Identity = 67/85 (78.82%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPP-AKLRLHRNKYIMCSGCFAALLLILAVIGIVL 60
          MA K+QVKPLAS +  LRSDD  FLPPP  KL LHRNKYIMC GCFAALLLILAVIGIVL
Sbjct: 1  MADKEQVKPLASASAELRSDDHIFLPPPDPKLHLHRNKYIMCCGCFAALLLILAVIGIVL 60

Query: 61 GFTVLHIKTPDLKIDKLSFSNATSS 85
          GFTV HIKTPD+KID LSF N T S
Sbjct: 61 GFTVFHIKTPDIKIDSLSFPNDTLS 85

[Close]

BLAST of Carg02560 vs. ExPASy TrEMBL
Match: A0A5A7THA2 (Late embryogenesis abundant protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002120 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-25
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
          MA K+QVKPLAS    LRSDD  FLPPP KL L+RNKYI C GCF+ALLLILAVIGIVLG
Sbjct: 1  MADKEQVKPLASATAELRSDDHIFLPPPPKLNLYRNKYIKCCGCFSALLLILAVIGIVLG 60

Query: 61 FTVLHIKTPDLKIDKLSFSNATSS 85
          FTV HIKTPD+KID LSF N T S
Sbjct: 61 FTVFHIKTPDIKIDSLSFPNDTLS 84

[Close]

BLAST of Carg02560 vs. ExPASy TrEMBL
Match: A0A1S3ATT7 (uncharacterized protein LOC103482794 OS=Cucumis melo OX=3656 GN=LOC103482794 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-25
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLG 60
          MA K+QVKPLAS    LRSDD  FLPPP KL L+RNKYI C GCF+ALLLILAVIGIVLG
Sbjct: 1  MADKEQVKPLASATAELRSDDHIFLPPPPKLNLYRNKYIKCCGCFSALLLILAVIGIVLG 60

Query: 61 FTVLHIKTPDLKIDKLSFSNATSS 85
          FTV HIKTPD+KID LSF N T S
Sbjct: 61 FTVFHIKTPDIKIDSLSFPNDTLS 84

[Close]

BLAST of Carg02560 vs. TAIR 10
Match: AT4G23610.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 4  KDQVKPLASPATHLRSD----DDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVL 63
          +DQ KPLA      RSD    +DQ+     K    + K I+C G  A+L +++AV  IVL
Sbjct: 10 EDQAKPLAPLFLTTRSDQPDEEDQYHHDRTKYVHSQTKLILCCGFIASLTMLIAVTFIVL 69

Query: 64 GFTVLHIKTPDLKIDKLSFS 80
            TV H+ +P+L +D +SF+
Sbjct: 70 SLTVFHLHSPNLTVDSISFN 89

The following BLAST results are available for this feature:

BLAST of Carg02560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036010.1	1.7e-41	100.00	hypothetical protein SDJN02_02810, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6606064.1	7.5e-37	97.62	hypothetical protein SDJN03_03381, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958536.1	7.5e-37	97.62	uncharacterized protein LOC111459739 [Cucurbita moschata]	[more]
XP_023532981.1	2.8e-36	96.43	uncharacterized protein LOC111794996 [Cucurbita pepo subsp. pepo]	[more]
XP_022995815.1	8.3e-36	95.24	uncharacterized protein LOC111491239 [Cucurbita maxima]	[more]

BLAST of Carg02560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2C0	3.6e-37	97.62	uncharacterized protein LOC111459739 OS=Cucurbita moschata OX=3662 GN=LOC1114597...	[more]
A0A6J1K4Z4	4.0e-36	95.24	uncharacterized protein LOC111491239 OS=Cucurbita maxima OX=3661 GN=LOC111491239...	[more]
A0A0A0KMH1	6.4e-26	78.82	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152140 PE=4 ...	[more]
A0A5A7THA2	1.9e-25	76.19	Late embryogenesis abundant protein-like protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3ATT7	1.9e-25	76.19	uncharacterized protein LOC103482794 OS=Cucumis melo OX=3656 GN=LOC103482794 PE=...	[more]

BLAST of Carg02560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23610.1	3.0e-07	38.75	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02560-RA	Carg02560-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane