Carg02524 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02524
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	YqgFc domain-containing protein
Location	Carg_Chr02: 8295031 .. 8296830 (+)
RNA-Seq Expression	Carg02524
Synteny	Carg02524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATGAAATTTCGAGGGTTTTCCAAAGGTATGGTCCTGACCAGATCAAATTGGAATTTCTTCCGAAAATTAATTGCATCGAGGTTCCGAATTCGGGCTTAATTCACTGTGCTTCATCTTCAACTTTGCAGGTAATAGTTGGAATCTATGAATTCTATTGAGTTTTCAAGTTACAATGGATTGCGAATGAATTTGAATGTGCTGAGTTAATTGCTGCACTAATTGTACGTTTTGGGCTTCGAAGGCGCGAAGCTGCAAATGATTTGTGCGAATCAGCTGCTGGATAACATGGTTCACTGAGCTAGATAGTAGTACGAGATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTCTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGGTATTTTGTTTCTCTGTTCATAGTATTGTGTCTGAGAGATTTGTAGTAATGGGATTTAAGTTGAAGTTCAAATAACGTGACCAGTATTAGTTGTTCTTCGGTTCTGCAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGGTGAGATATTTTACTCTGTTTTGTTATGAATATTTGTTAAATGTTATTTGATGCAATGATAAATGATAAGCAATGATTGAAGGGTGGTGCCACAAAATTCTGTAGGGAGGACTTTAATTTACTCGATCTTCAGTGAGTACCTTCTAATGTCCAAATGGGATTTCTTATGACGCCACTATGAATTTAGGTAGATAGCTCTAGGTTTAAAATGTAATACATTAGCTCTAACTTCACCATTTTTTCCCCTCTTCTTCCGTGATGTGTTGCTGTGCAGCATAGTTACTTTTAATCTTTGATTATCTGATGTTGAATTGCCAATGCTATTCTTTCTCGAAACCTTCAGTCATTTCCATGATGTGTATATTTACACCTGCTTCTGGTTTGTGTTTGCAGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGTCGATGTGTGTTCTTTATCTCTTGAAATTCATCATTATTCACTCTCATCTCTACTTGACATTACATTATTCTGTATACAGGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGGTTGTCAATGTTATTAGTGTGGGCAGCCCTTCCTGTTAGTCTTGTGACTTATGTGACATGCCTTTCAATGTCTCTGTCAATTCAATGACTCGTTCATACAATTGTGATTATGTTTGAATTGTCTATCTCACCTTTTTGAATCGTGGTATTGACTTGTGAATAGGCTGCTGCATTGCATTGCATTGCATTGCATTTCATTCAACATTGAATATTGAATTTGTGATTTTGATCTATGTACACAGAATGTGGAACTTCTGATAAAACCATTGAAACTGCCTCCCATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGTAATTTACAATTTTGTTTTCCTCTTTAGTTTTAGCTTTCTATTATCTTGCCAAGGTTGGTAGAATTGCATCTAAAACAGCAATTAAAACTTCAGTTCATTAACAATAGGGTGGTATATCTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAGAGTAAGATGGGTCATATGGGATCAGGTACT

mRNA sequence

TAATGAAATTTCGAGGGTTTTCCAAAGGTAATAGTTGGAATCTATGAATTCTATTGAGTTTTCAAGTTACAATGGATTGCGAATGAATTTGAATGTGCTGAGTTAATTGCTGCACTAATTGTACGTTTTGGGCTTCGAAGGCGCGAAGCTGCAAATGATTTGTGCGAATCAGCTGCTGGATAACATGGTTCACTGAGCTAGATAGTAGTACGAGATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTCTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGTCGATGTGTGTTCTTTATCTCTTGAAATTCATCATTATTCACTCTCATCTCTACTTGACATTACATTATTCTGTATACAGGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAACCATTGAAACTGCCTCCCATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAGAGTAAGATGGGTCATATGGGATCAGGTACT

Coding sequence (CDS)

ATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTCTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGTCGATGTGTGTTCTTTATCTCTTGAAATTCATCATTATTCACTCTCATCTCTACTTGACATTACATTATTCTGTATACAGGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAACCATTGAAACTGCCTCCCATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAG

Protein sequence

MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER

Homology

[Close]

BLAST of Carg02524 vs. NCBI nr
Match: KAG7036046.1 (hypothetical protein SDJN02_02846 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393.7 bits (1010), Expect = 9.5e-106
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180

Query: 181 YLDHFNRRPELEER 195
           YLDHFNRRPELEER
Sbjct: 181 YLDHFNRRPELEER 194

[Close]

BLAST of Carg02524 vs. NCBI nr
Match: XP_022995255.1 (uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharacterized protein LOC111490857 [Cucurbita maxima])

HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86
Identity = 168/194 (86.60%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRN D                         AVQ
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNAD-------------------------AVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 169

Query: 181 YLDHFNRRPELEER 195
           YLDHFNRRPELEER
Sbjct: 181 YLDHFNRRPELEER 169

[Close]

BLAST of Carg02524 vs. NCBI nr
Match: XP_022957830.1 (uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957832.1 uncharacterized protein LOC111459253 [Cucurbita moschata])

HSP 1 Score: 328.9 bits (842), Expect = 2.9e-86
Identity = 167/194 (86.08%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRN D                         AVQ
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNAD-------------------------AVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 169

Query: 181 YLDHFNRRPELEER 195
           YLDHFNRRPEL+ER
Sbjct: 181 YLDHFNRRPELDER 169

[Close]

BLAST of Carg02524 vs. NCBI nr
Match: XP_023533829.1 (uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 6.4e-86
Identity = 167/194 (86.08%), Postives = 167/194 (86.08%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRN D                         AVQ
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNAD-------------------------AVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQ 
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQA 169

Query: 181 YLDHFNRRPELEER 195
           YLDHFNRRPELEER
Sbjct: 181 YLDHFNRRPELEER 169

[Close]

BLAST of Carg02524 vs. NCBI nr
Match: KAG6606099.1 (hypothetical protein SDJN03_03416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.1 bits (767), Expect = 1.4e-77
Identity = 153/179 (85.47%), Postives = 153/179 (85.47%), Query Frame = 0


Query: 16  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 75
           GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL
Sbjct: 41  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 100

Query: 76  SGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLCKTGKLE 135
           SGFIVGYPFDGQRRN D                         AVQVKIFIDDLCKTGKLE
Sbjct: 101 SGFIVGYPFDGQRRNAD-------------------------AVQVKIFIDDLCKTGKLE 160

Query: 136 GVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 195
           GVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER
Sbjct: 161 GVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194

[Close]

BLAST of Carg02524 vs. ExPASy Swiss-Prot
Match: B6IN25 (Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=RC1_1518 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-10
Identity = 47/174 (27.01%), Postives = 76/174 (43.68%), Query Frame = 0


Query: 14  LKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISEL 73
           LK +    GR +GLD+G+K +GLAVSDP   +ASP+  + R K      A +  R + + 
Sbjct: 9   LKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQD--AQELARAMRDR 68

Query: 74  SLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLCKTGK 133
            +   +VG P +        C            S+ + +   +Q  Q+  F  ++     
Sbjct: 69  DVRALVVGLPVNMDGTEGPRC-----------QSVREFSRLLLQRPQLFGFEPEI----- 128

Query: 134 LEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNR 188
                  FWDE  ++  VE ++    +       ++DK AA  ILQG LD   +
Sbjct: 129 ------AFWDERLSTSAVERMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQ 158

[Close]

BLAST of Carg02524 vs. ExPASy Swiss-Prot
Match: A4XKC6 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=Csac_1776 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 48/165 (29.09%), Postives = 77/165 (46.67%), Query Frame = 0


Query: 23  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGY 82
           R L LD+G + +G+A+SDP    A P  VL  +K +++   LD  ++ +E  +   ++GY
Sbjct: 2   RILCLDIGSRRIGVAISDPLKIAAQPFCVLDLQKEDLY-SCLD--KIFNEHQIEKIVIGY 61

Query: 83  PFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLC-KTGKLEGVKYTF 142
           P               + H    +  L               ID++C +  +   V    
Sbjct: 62  PVS-------------KFHPDKATEKLQ-------------KIDEICSELERRYKVGIIK 121

Query: 143 WDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFN 187
           WDE F++K VE +++   +     K ++DK AAV ILQGYLD  N
Sbjct: 122 WDERFSTKAVERILREENVSWQKRKKVVDKLAAVYILQGYLDFIN 137

[Close]

BLAST of Carg02524 vs. ExPASy Swiss-Prot
Match: C4Z578 (Putative pre-16S rRNA nuclease OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=EUBELI_00774 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-09
Identity = 45/162 (27.78%), Postives = 75/162 (46.30%), Query Frame = 0


Query: 23  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTN-MHLMALDFQRLISELSLSGFIVG 82
           R +GLDVG K VG+A+SDP    A P   + RK+ N +       +++ISE  ++  +VG
Sbjct: 2   RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61

Query: 83  YPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLCKTGKLEGVKYTF 142
           YP +                       +D T+      + K   +      +  G+  T 
Sbjct: 62  YPKN-----------------------MDDTI----GERAKACEEFAAALERRTGLPVTL 121

Query: 143 WDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLD 184
           WDE  T+   + +++   +     KT+ID+ AAV IL+GY++
Sbjct: 122 WDERLTTVEADEVLEECGMRRENRKTVIDQLAAVFILRGYME 136

[Close]

BLAST of Carg02524 vs. ExPASy Swiss-Prot
Match: B8I4S7 (Putative pre-16S rRNA nuclease OS=Ruminiclostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) OX=394503 GN=Ccel_2239 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 42/161 (26.09%), Postives = 70/161 (43.48%), Query Frame = 0


Query: 23  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGY 82
           R LG+D GD  +G+A+SDP    A  L ++ + K ++    L    +I+E S++  ++GY
Sbjct: 2   RILGIDYGDSRIGVAISDPMGWTAQGLEMI-KSKDSLKKAVLRLSEIINEYSVTDIVIGY 61

Query: 83  PFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLCKTGKLEGVKYTFW 142
           P +                               +  + + FI  +   G+   +K   W
Sbjct: 62  PINMNGTKGP------------------------RTERTEEFIKKISDLGQFNIIK---W 121

Query: 143 DECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLD 184
           DE  T+ +    +  L +     K I+D  +AV ILQGYLD
Sbjct: 122 DERLTTVSAHRTMNELGIKASKKKGIVDTMSAVLILQGYLD 134

[Close]

BLAST of Carg02524 vs. ExPASy Swiss-Prot
Match: Q3AEN4 (Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=CHY_0542 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-08
Identity = 48/162 (29.63%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 23  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGY 82
           + LGLDVGDK +G+A+SD     A  L+V++R  T++     + +++I    ++  ++GY
Sbjct: 2   KVLGLDVGDKKIGVALSDELGLTAQGLTVIYR--TSLKKDLEEIKKIIDLHHVTEVVIGY 61

Query: 83  PFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLCKTGKLEGVKYTFW 142
           P     RN++  +                     +A  VK F  +L    K  G+K  FW
Sbjct: 62  P-----RNMNGTAGP-------------------RAELVKRFARELY---KFTGIKPVFW 121

Query: 143 DECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDH 185
           DE  ++   E L+    +     K +IDK AA  IL GYL++
Sbjct: 122 DERLSTVEAEKLLISGDISRRKRKKVIDKLAATLILSGYLNY 134

[Close]

BLAST of Carg02524 vs. ExPASy TrEMBL
Match: A0A6J1K3L4 (uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.2e-87
Identity = 168/194 (86.60%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRN D                         AVQ
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNAD-------------------------AVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 169

Query: 181 YLDHFNRRPELEER 195
           YLDHFNRRPELEER
Sbjct: 181 YLDHFNRRPELEER 169

[Close]

BLAST of Carg02524 vs. ExPASy TrEMBL
Match: A0A6J1H0B7 (uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC111459253 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 167/194 (86.08%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMALDFQRLISELSLSGFIVGYPFDGQRRN D                         AVQ
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNAD-------------------------AVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 169

Query: 181 YLDHFNRRPELEER 195
           YLDHFNRRPEL+ER
Sbjct: 181 YLDHFNRRPELDER 169

[Close]

BLAST of Carg02524 vs. ExPASy TrEMBL
Match: A0A6J1E3H7 (uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026145 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.2e-74
Identity = 147/191 (76.96%), Postives = 154/191 (80.63%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYV+PLN+FRDLL  N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MH
Sbjct: 1   MKYVKPLNMFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMH 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMA D QRLISELSL+GFIVGYPFD QRRN D                         AVQ
Sbjct: 61  LMARDLQRLISELSLAGFIVGYPFDRQRRNAD-------------------------AVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTG LEGVKYTFWDECFTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQG 166

Query: 181 YLDHFNRRPEL 192
           YLD+ NRRPEL
Sbjct: 181 YLDYHNRRPEL 166

[Close]

BLAST of Carg02524 vs. ExPASy TrEMBL
Match: A0A0A0KMK7 (YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.9e-70
Identity = 142/193 (73.58%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N D                         A+Q
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPD-------------------------AMQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQG 168

Query: 181 YLDHFNRRPELEE 194
           YLD+FNRRPEL E
Sbjct: 181 YLDYFNRRPELGE 168

[Close]

BLAST of Carg02524 vs. ExPASy TrEMBL
Match: A0A1S3ATQ4 (putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482742 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.0e-65
Identity = 133/193 (68.91%), Postives = 146/193 (75.65%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYV+P  LFRDLLK + L+  R LGLDVGDKYVGLAVSDPDNKIASPLSVL RKK  M 
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMA DFQ+LISE SL+GFIVGYPFD  R+N                          +A+Q
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNT-------------------------EAIQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDE FTSKNVE +IKPL L P +SKT++DKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQG 168

Query: 181 YLDHFNRRPELEE 194
           YLD+FNRRPEL E
Sbjct: 181 YLDYFNRRPELSE 168

[Close]

BLAST of Carg02524 vs. TAIR 10
Match: AT3G52905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 188.0 bits (476), Expect = 7.3e-48
Identity = 99/187 (52.94%), Postives = 123/187 (65.78%), Query Frame = 0


Query: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60
           MKYV+PL+L  + LK      GRFLGLDVGDKYVGLA+SDP N +ASPLSVL RKK+N+ 
Sbjct: 1   MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60

Query: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQ 120
           LMA DFQ L+   S+SG +VGYPF G+  NV+                          V 
Sbjct: 61  LMATDFQNLVKAFSVSGLVVGYPF-GKLNNVE------------------------DVVT 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           V +FI++L KT KL+ VKYT+WDE  +SK VEL++KPL L P+  KT++DK AAV ILQ 
Sbjct: 121 VNLFIEELRKTEKLKDVKYTYWDERLSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQE 162

Query: 181 YLDHFNR 188
           YLD+ NR
Sbjct: 181 YLDYANR 162

The following BLAST results are available for this feature:

BLAST of Carg02524 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036046.1	9.5e-106	100.00	hypothetical protein SDJN02_02846 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022995255.1	1.3e-86	86.60	uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharac...	[more]
XP_022957830.1	2.9e-86	86.08	uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 unchar...	[more]
XP_023533829.1	6.4e-86	86.08	uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo]	[more]
KAG6606099.1	1.4e-77	85.47	hypothetical protein SDJN03_03416, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg02524 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6IN25	7.7e-10	27.01	Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / S...	[more]
A4XKC6	1.3e-09	29.09	Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain A...	[more]
C4Z578	2.3e-09	27.78	Putative pre-16S rRNA nuclease OS=Lachnospira eligens (strain ATCC 27750 / DSM 3...	[more]
B8I4S7	1.1e-08	26.09	Putative pre-16S rRNA nuclease OS=Ruminiclostridium cellulolyticum (strain ATCC ...	[more]
Q3AEN4	1.5e-08	29.63	Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC...	[more]

BLAST of Carg02524 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3L4	6.2e-87	86.60	uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857...	[more]
A0A6J1H0B7	1.4e-86	86.08	uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC1114592...	[more]
A0A6J1E3H7	1.2e-74	76.96	uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]
A0A0A0KMK7	6.9e-70	73.58	YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 ...	[more]
A0A1S3ATQ4	3.0e-65	68.91	putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348274...	[more]

BLAST of Carg02524 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52905.1	7.3e-48	52.94	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 22..151 e-value: 5.2E-7 score: 39.3
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	3.30.420.140		coord: 22..190 e-value: 2.3E-24 score: 87.9
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 23..90 e-value: 8.8E-13 score: 48.8 coord: 118..183 e-value: 7.5E-7 score: 29.6
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 1..93
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 117..191
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 22..186 score: 15.590947
IPR005227	Putative pre-16S rRNA nuclease	CDD	cd16964	YqgF	coord: 24..183 e-value: 2.46348E-27 score: 98.3286
None	No IPR available	PANTHER	PTHR33317:SF1	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 1..93
None	No IPR available	PANTHER	PTHR33317:SF1	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 117..191
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 22..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02524-RA	Carg02524-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000967	rRNA 5'-end processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006364	rRNA processing