Carg02498 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02498
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Homeobox protein knotted-1, putative
Location	Carg_Chr02: 8441825 .. 8443041 (-)
RNA-Seq Expression	Carg02498
Synteny	Carg02498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGCAAGTCAAACAAGTTATTATCATCATTCAAAATGTTTAGATATTAGTGTCTTTTTTTAAATGGAGATTCAAATTCTCTCTTTCTTGTCTGTAATCTACTATACAAGAAACTTAAAAATGCTTTGTTTAATTTAATCTCTGCTGGGTTTTTCTTTTACTGTAAAGTCTTTCATTATCCATCTTTTGCTCGTTGTAGTAGCGTGCATATTAATATCTAAAATTGTCATCTTATTCAAGAAATTGGGGTGGTTTTGAATTGTCACGCCCTCGATTTAACATGACCAATAATGTGTGGCTTTTAATGTCAATTCCAGTCTTGTGGGGGAAGAGGTTGTTAAAAATATAATGAGATCCTTTAAGCACAGTTAGTTGTAGTATGGAACCTTAATTATTGGCACCGTCAAAGTAGTTTATATCTTTTGCTTTTGTTGAACATTTGATGCATTTCCCATTACCAAACATGGAAAGATGTGCTAATTTACCAACTTTGTATGCTAATTTAACATGGTGTTTAGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGTTCCCATGGAGTTTTCGCTTGATCAATCTGGTAGTGATGCACACGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCAGAAAGGTCGTTGATGGAGAGGGTTCGACAAGAATTGAAGATTGAGCTAAAACAGGTCCCTTTTATATGGTCTTGCAAATGAAGGGATGGTTTGTTTGGGATTTAGAAGAGGTCAAGAACGTGATGGTATTTTGGTTGCAGGGATTCAAGTCAAGAATTGAGGACGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGTAAGGAAAAACCAAACCCAACCATTTCATTTGGAAACAAAGAGTTTTGAAGTTGGAATCTCTACAACATCTCGTCTTTCCTTTGCGATTGCAGGAAGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCCTGAAGTCAAAGCGCAAGAGATAAGGAAATCATATGATATGTTATATTGTAGGTTTGGCAAAAGTATGGTCTGA

mRNA sequence

ATGGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGTTCCCATGGAGTTTTCGCTTGATCAATCTGGTAGTGATGCACACGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCAGAAAGGTCGTTGATGGAGAGGGGATGGTTTGTTTGGGATTTAGAAGAGGTCAAGAACGTGATGGTATTTTGGTTGCAGGGATTCAAGTCAAGAATTGAGGACGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGTAAGGAAAAACCAAACCCAACCATTTCATTTGGAAACAAAGAGTTTTGAAGTTGGAATCTCTACAACATCTCGTCTTTCCTTTGCGATTGCAGGAAGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCCTGAAGTCAAAGCGCAAGAGATAAGGAAATCATATGATATGTTATATTGTAGGTTTGGCAAAAGTATGGTCTGA

Coding sequence (CDS)

ATGGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGTTCCCATGGAGTTTTCGCTTGATCAATCTGGTAGTGATGCACACGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCAGAAAGGTCGTTGATGGAGAGGGGATGGTTTGTTTGGGATTTAGAAGAGGTCAAGAACGTGATGGTATTTTGGTTGCAGGGATTCAAGTCAAGAATTGAGGACGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGTAAGGAAAAACCAAACCCAACCATTTCATTTGGAAACAAAGAGTTTTGAAGTTGGAATCTCTACAACATCTCGTCTTTCCTTTGCGATTGCAGGAAGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCCTGAAGTCAAAGCGCAAGAGATAAGGAAATCATATGATATGTTATATTGTAGGTTTGGCAAAAGTATGGTCTGA

Protein sequence

MGVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTVRKNQTQPFHLETKSFEVGISTTSRLSFAIAGRRQGEAGGGDGVAAETNKQLVHQPKEEKLAQQLSISNIPEVKAQEIRKSYDMLYCRFGKSMV

Homology

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BLAST of Carg02498 vs. NCBI nr
Match: KAG7036072.1 (Homeobox protein knotted-1-like 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 426.0 bits (1094), Expect = 1.9e-115
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MGVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 60
           MGVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD
Sbjct: 1   MGVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 60

Query: 61  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTVRK 120
           LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTVRK
Sbjct: 61  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTVRK 120

Query: 121 NQTQPFHLETKSFEVGISTTSRLSFAIAGRRQGEAGGGDGVAAETNKQLVHQPKEEKLAQ 180
           NQTQPFHLETKSFEVGISTTSRLSFAIAGRRQGEAGGGDGVAAETNKQLVHQPKEEKLAQ
Sbjct: 121 NQTQPFHLETKSFEVGISTTSRLSFAIAGRRQGEAGGGDGVAAETNKQLVHQPKEEKLAQ 180

Query: 181 QLSISNIPEVKAQEIRKSYDMLYCRFGKSMV 212
           QLSISNIPEVKAQEIRKSYDMLYCRFGKSMV
Sbjct: 181 QLSISNIPEVKAQEIRKSYDMLYCRFGKSMV 211

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BLAST of Carg02498 vs. NCBI nr
Match: KAG6606131.1 (Homeobox protein knotted-1-like 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-45
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMER       
Sbjct: 147 GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMER-----VR 206

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 207 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 254

[Close]

BLAST of Carg02498 vs. NCBI nr
Match: XP_022958449.1 (homeobox protein knotted-1-like 7 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-45
Identity = 99/116 (85.34%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEGSGATMSDDDDDVPMEFSLDQSG DAHDMMGFGPLLPTESERSLMER       
Sbjct: 149 GVSLGEGSGATMSDDDDDVPMEFSLDQSGGDAHDMMGFGPLLPTESERSLMER-----VR 208

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 209 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 256

[Close]

BLAST of Carg02498 vs. NCBI nr
Match: XP_023532817.1 (homeobox protein knotted-1-like 7 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532818.1 homeobox protein knotted-1-like 7 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-45
Identity = 99/116 (85.34%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEGSGATMSDDDDDVPMEFSLDQSG DAHDMMGFGPLLPTESERSLMER       
Sbjct: 148 GVSLGEGSGATMSDDDDDVPMEFSLDQSGGDAHDMMGFGPLLPTESERSLMER-----VR 207

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 208 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 255

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BLAST of Carg02498 vs. NCBI nr
Match: XP_038875957.1 (homeobox protein knotted-1-like 7 [Benincasa hispida])

HSP 1 Score: 189.5 bits (480), Expect = 2.9e-44
Identity = 97/116 (83.62%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDDDDDVPM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 148 GVSLGEGTGATMSDDDDDVPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 207

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 208 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 255

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BLAST of Carg02498 vs. ExPASy Swiss-Prot
Match: Q9FPQ8 (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana OX=3702 GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-40
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSD---AHDMMGFGPLLPTESERSLMERGWFV 61
           G +LGEGSGATMS+D+DD+PM+FS D SG D    HDM GFGPLLPTESERSLMER    
Sbjct: 135 GATLGEGSGATMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMER---- 194

Query: 62  WDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
              +E+K  +    QGFKSRIEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPT
Sbjct: 195 -VRQELKLEL---KQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPT 245

[Close]

BLAST of Carg02498 vs. ExPASy Swiss-Prot
Match: P46606 (Homeobox protein HD1 OS=Brassica napus OX=3708 GN=HD1 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-39
Identity = 86/119 (72.27%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSD---AHDMMGFGPLLPTESERSLMERGWFV 61
           G +LGEGSGATMS+D+DD+ M+FS D SG D    HDM GFGPLLPTESERSLMER    
Sbjct: 138 GATLGEGSGATMSEDEDDLQMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMER---- 197

Query: 62  WDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
              +E+K  +    QGFKSRIEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPT
Sbjct: 198 -VRQELKLEL---KQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPT 248

[Close]

BLAST of Carg02498 vs. ExPASy Swiss-Prot
Match: Q94LW3 (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HOS66 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-35
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD-VPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 61
           G +L EG+GATMS+D+D+  PM       GSD HD+MGFGPL+PT+SERSLMER      
Sbjct: 161 GATLEEGTGATMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMER-----V 220

Query: 62  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
            +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTT+LK WWQQHSKWPYPT
Sbjct: 221 RQELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPT 269

[Close]

BLAST of Carg02498 vs. ExPASy Swiss-Prot
Match: O04136 (Homeobox protein knotted-1-like 3 OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.1e-33
Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD-VPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 61
           GVS GEG+ ATMSDD+DD V  + +L   G + HD MGFGPL+PTESERSLMER      
Sbjct: 273 GVSPGEGTSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMER-----V 332

Query: 62  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
            +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ HSKWPYPT
Sbjct: 333 RQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 381

[Close]

BLAST of Carg02498 vs. ExPASy Swiss-Prot
Match: O22300 (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum OX=4081 GN=LET12 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.0e-32
Identity = 74/117 (63.25%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD-VPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 61
           GV+ GEG+GATMSDDDDD    + +    G D  D MGFGPL+PTESERSLMER      
Sbjct: 270 GVAPGEGTGATMSDDDDDQADSDTNFLDGGFDGPDSMGFGPLVPTESERSLMER-----V 329

Query: 62  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
            +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ HSKWPYPT
Sbjct: 330 RQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 378

[Close]

BLAST of Carg02498 vs. ExPASy TrEMBL
Match: A0A4D8Z3M4 (ELK domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_038621 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.0e-51
Identity = 116/194 (59.79%), Postives = 136/194 (70.10%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           G +LGEGSGATMSDD+D++ M+FSLDQSG + HD+MGFGPLLPTESER+LMER       
Sbjct: 144 GAALGEGSGATMSDDEDELQMDFSLDQSGGEGHDLMGFGPLLPTESERTLMER-----VR 203

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTVRKN 121
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTVR  
Sbjct: 204 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTVR-- 263

Query: 122 QTQPFHLETKSFEVGISTTSRLSFAIAGRRQGEAGGGDGVAAETNKQLVHQPKEEKLAQQ 181
                                        RQG+A G DG AAE +KQLVHQ KE KLAQQ
Sbjct: 264 ----------------------------GRQGKASGEDGSAAEADKQLVHQSKEAKLAQQ 299

Query: 182 LSISNIPEVKAQEI 196
            ++S + +V+ +E+
Sbjct: 324 FAVSYVSQVQEKEV 299

[Close]

BLAST of Carg02498 vs. ExPASy TrEMBL
Match: A0A6J1H546 (homeobox protein knotted-1-like 7 OS=Cucurbita moschata OX=3662 GN=LOC111459669 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.8e-45
Identity = 99/116 (85.34%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEGSGATMSDDDDDVPMEFSLDQSG DAHDMMGFGPLLPTESERSLMER       
Sbjct: 149 GVSLGEGSGATMSDDDDDVPMEFSLDQSGGDAHDMMGFGPLLPTESERSLMER-----VR 208

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 209 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 256

[Close]

BLAST of Carg02498 vs. ExPASy TrEMBL
Match: A0A5A7TM21 (Homeobox protein knotted-1-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003100 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.4e-44
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+PM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 38  GVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 97

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 98  QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 145

[Close]

BLAST of Carg02498 vs. ExPASy TrEMBL
Match: A0A0A0KKD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156150 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.4e-44
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+PM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 148 GVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 207

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 208 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 255

[Close]

BLAST of Carg02498 vs. ExPASy TrEMBL
Match: A0A6J1DZV1 (homeobox protein knotted-1-like 7 OS=Momordica charantia OX=3673 GN=LOC111026106 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.4e-44
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+PM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 80  GVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 139

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 140 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 187

[Close]

BLAST of Carg02498 vs. TAIR 10
Match: AT1G62990.1 (KNOTTED-like homeobox of Arabidopsis thaliana 7 )

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-41
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSD---AHDMMGFGPLLPTESERSLMERGWFV 61
           G +LGEGSGATMS+D+DD+PM+FS D SG D    HDM GFGPLLPTESERSLMER    
Sbjct: 135 GATLGEGSGATMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMER---- 194

Query: 62  WDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
              +E+K  +    QGFKSRIEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPT
Sbjct: 195 -VRQELKLEL---KQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPT 245

[Close]

BLAST of Carg02498 vs. TAIR 10
Match: AT5G11060.1 (KNOTTED1-like homeobox gene 4 )

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-31
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAH------DMMGFGPLLPTESERSLMERG 61
           GVS GEG+GATMS+D+D        +Q  SDAH      D +GFGPL+PTESERSLMER 
Sbjct: 232 GVSPGEGTGATMSEDED--------EQVESDAHLFDGSLDGLGFGPLVPTESERSLMER- 291

Query: 62  WFVWDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPY 118
                 +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK+WWQ HSKWPY
Sbjct: 292 ----VRQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPY 337

[Close]

BLAST of Carg02498 vs. TAIR 10
Match: AT5G25220.1 (KNOTTED1-like homeobox gene 3 )

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-31
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD-VPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 61
           GVS GEG GATMSDD+D+ V  + ++   G    D++GFGPL+PTESERSLMER      
Sbjct: 268 GVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLMER-----V 327

Query: 62  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
            +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ HSKWPYPT
Sbjct: 328 RQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 373

[Close]

BLAST of Carg02498 vs. TAIR 10
Match: AT5G25220.2 (KNOTTED1-like homeobox gene 3 )

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-31
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD-VPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 61
           GVS GEG GATMSDD+D+ V  + ++   G    D++GFGPL+PTESERSLMER      
Sbjct: 268 GVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLMER-----V 327

Query: 62  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
            +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ HSKWPYPT
Sbjct: 328 RQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 373

[Close]

BLAST of Carg02498 vs. TAIR 10
Match: AT4G32040.1 (KNOTTED1-like homeobox gene 5 )

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-29
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD--VPMEFSLDQSGSDAHD-MMGFGPLLPTESERSLMERGWFV 61
           GVS  E +G TMSDD+DD  V  E ++     D  D +MGFGPL+PTE ERSLMER    
Sbjct: 222 GVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMER---- 281

Query: 62  WDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
              +E+K+ +    QGFK +I D+REEI+RKRRAGKLPGDTT+VLK WW+ HSKWPYPT
Sbjct: 282 -VKKELKHEL---KQGFKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPT 332

The following BLAST results are available for this feature:

BLAST of Carg02498 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036072.1	1.9e-115	100.00	Homeobox protein knotted-1-like 7, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6606131.1	2.7e-45	86.21	Homeobox protein knotted-1-like 7, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958449.1	7.8e-45	85.34	homeobox protein knotted-1-like 7 [Cucurbita moschata]	[more]
XP_023532817.1	7.8e-45	85.34	homeobox protein knotted-1-like 7 isoform X1 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_038875957.1	2.9e-44	83.62	homeobox protein knotted-1-like 7 [Benincasa hispida]	[more]

BLAST of Carg02498 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPQ8	3.5e-40	73.11	Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana OX=3702 GN=KNAT7 PE=1 ...	[more]
P46606	3.0e-39	72.27	Homeobox protein HD1 OS=Brassica napus OX=3708 GN=HD1 PE=2 SV=1	[more]
Q94LW3	3.4e-35	67.52	Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HO...	[more]
O04136	4.1e-33	64.10	Homeobox protein knotted-1-like 3 OS=Malus domestica OX=3750 PE=2 SV=1	[more]
O22300	6.0e-32	63.25	Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum OX=4081 GN=LET12 P...	[more]

BLAST of Carg02498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D8Z3M4	6.0e-51	59.79	ELK domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_038621 PE=3...	[more]
A0A6J1H546	3.8e-45	85.34	homeobox protein knotted-1-like 7 OS=Cucurbita moschata OX=3662 GN=LOC111459669 ...	[more]
A0A5A7TM21	5.4e-44	81.90	Homeobox protein knotted-1-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0KKD3	5.4e-44	81.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156150 PE=3 SV=1	[more]
A0A6J1DZV1	5.4e-44	81.90	homeobox protein knotted-1-like 7 OS=Momordica charantia OX=3673 GN=LOC111026106...	[more]

BLAST of Carg02498 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62990.1	2.5e-41	73.11	KNOTTED-like homeobox of Arabidopsis thaliana 7	[more]
AT5G11060.1	2.3e-31	60.66	KNOTTED1-like homeobox gene 4	[more]
AT5G25220.1	4.0e-31	61.54	KNOTTED1-like homeobox gene 3	[more]
AT5G25220.2	4.0e-31	61.54	KNOTTED1-like homeobox gene 3	[more]
AT4G32040.1	1.3e-29	58.82	KNOTTED1-like homeobox gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 72..135 e-value: 6.8E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 4..118
None	No IPR available	PANTHER	PTHR11850:SF315	HOMEOBOX PROTEIN KNOTTED-1-LIKE 7	coord: 4..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02498-RA	Carg02498-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010192	mucilage biosynthetic process
biological_process	GO:0080001	mucilage extrusion from seed coat
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:2000652	regulation of secondary cell wall biogenesis
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0010214	seed coat development
biological_process	GO:0080112	seed growth
biological_process	GO:0010089	xylem development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding