Carg02478 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02478
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein cornichon homolog 4-like
LocationCarg_Chr02: 8520437 .. 8522098 (+)
RNA-Seq ExpressionCarg02478
SyntenyCarg02478
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATATCTACGTCTGGCTCCTCTCTTTCTTCTTTATCATTGCGCTTCTCATACTCGTCGTTTTCCAGGTTGTCTCTAAACCCTAGAATTTCTATATTTTGTGTATTTGCCCGTTAATTTTCTTGAAGTCACCGGAGAATTCAGATTTCATATTGTTTGACGCTAAATATGTGTTTTTGTTAATGAGAGCAGGAGCTGTAATTAGCAATTACTTAACTTTTCTGCATACTTACTTTTCTGCATACTAATGTGTTTTTGTGGATATATTCGAAACTGCTCGATGGAGACCCTGATTGTTTAAGTTACCTTCTGGGGTGGCATTAACAGCCTAGAGACTTGTCTAAAATTTGTTAGCCACGACACTTGTAAAGAGGAAGATGGATAGGAAGCTGTCTGATGTTTGATTTGAAGGCCCCTTGATTTCTCGATATAAACAATGTTTGCTTAAGTCGATTCCCCTTCTGTCTGTTCTCTGTGAATCATAATTGCTTGTGCTATCCTTAAGTCGATTAACTACCTGCCTTGTGATGGATTGTAGTTTATAAATACTAACTGCCCATTTTTGGAAGCTTACTATCTTAATTCGCCTATACCCTGTCATTAGTACAACCATTCCCTACATATGAATATTTGATTGACAATACTGTATTGTTAATTTTCTAATACCTTTGGTGTAACAATGTTGGAACTGAGGAACTTATGATTCTTTTGAAACTTGTTGCAGCTGATGTGCTTAGCTGATCTTGAGTTTGATTATATCAATCCTTATGATTCCTCATCACGAATAAACAAAGTGGTGGTACCTGAGTTCATCACCCAAGGAGTCTTGTGCATCTTTTATCTTTTAACAGGGCATTGGATTATGTCATTCTTTTGTGTGCCCTACCTCTATTACAATTTAAGATTGTAAGATTCTCTGATTCTTGCATCTTTGATTGGACTGTTTACTAAATCGAGGAGTATGGCAGCATGCTATAAATTGAAAAGAAAAAAATAAATAAGAAAAAGCTGAAGAGGTAAGATTGTAAATGAAGGATGAATTGTATATTTTGAAAGAGATTGGGTTGGTCATGGCTTTAATACTGGACTTGTTCGTTGCTGGTAATTCATGCCGAACTTCTTTATCCACCTGATGTGTGTTTTGCTGGTGATTAGGTACACTCAGCGAAAGCACCTGGTGGATGTTACCGAGATATTCAATCAGTTACCTTGGGAAAAGAAGCGAAGGCTTTTCAAACTCGTCTATCTTATTTCTCTTCTCTTTCTCTCCATATTTTGGTAATCCAAGAGGAGGAGAGACCGTTTTGTTATTTGGTTGAATCCTACTGTTCTGCTCTCTTCAATTTTGTTTCTGTGTGTTTGCAGGTTGATTTACAGTGCGTTGGAGGATCATGATTCTTGAATAGGAATAACAGAGCTGCAAATTGTTGTCTAGTAGGAGATAATGCCACTGTGCGACTCACTACAAAGTTTGGTGTTCTTTACTCGTAGGGTATCTTATTGTGTTGTAATTCTGGACAAATGATTGCCTCGTGAGTAACATCTAAAGGGGTTTTCTTTTTTCTTCTTGATTGCCACTAAATGCTGCCCCTGTTTTGCATTTATGTTTGTAAACAAAATTTGGAAACTATATTTATATGATTCTTATTTCTTGTACC

mRNA sequence

ATGGCTGATATCTACGTCTGGCTCCTCTCTTTCTTCTTTATCATTGCGCTTCTCATACTCGTCGTTTTCCAGCTGATGTGCTTAGCTGATCTTGAGTTTGATTATATCAATCCTTATGATTCCTCATCACGAATAAACAAAGTGGTGGTACCTGAGTTCATCACCCAAGGAGTCTTGGCATTGGATTATGTCATTCTTTTGTGTGCCCTACCTCTATTACAATTTAAGATTGTACACTCAGCGAAAGCACCTGGTGGATGTTACCGAGATATTCAATCAGTTACCTTGGGAAAAGAAGCGAAGGCTTTTCAAACTCGTCTATCTTATTTCTCTTCTCTTTCTCTCCATATTTTGGTTGATTTACAGTGCGTTGGAGGATCATGATTCTTGAATAGGAATAACAGAGCTGCAAATTGTTGTCTAGTAGGAGATAATGCCACTGTGCGACTCACTACAAAGTTTGGTGTTCTTTACTCGTAGGGTATCTTATTGTGTTGTAATTCTGGACAAATGATTGCCTCGTGAGTAACATCTAAAGGGGTTTTCTTTTTTCTTCTTGATTGCCACTAAATGCTGCCCCTGTTTTGCATTTATGTTTGTAAACAAAATTTGGAAACTATATTTATATGATTCTTATTTCTTGTACC

Coding sequence (CDS)

ATGGCTGATATCTACGTCTGGCTCCTCTCTTTCTTCTTTATCATTGCGCTTCTCATACTCGTCGTTTTCCAGCTGATGTGCTTAGCTGATCTTGAGTTTGATTATATCAATCCTTATGATTCCTCATCACGAATAAACAAAGTGGTGGTACCTGAGTTCATCACCCAAGGAGTCTTGGCATTGGATTATGTCATTCTTTTGTGTGCCCTACCTCTATTACAATTTAAGATTGTACACTCAGCGAAAGCACCTGGTGGATGTTACCGAGATATTCAATCAGTTACCTTGGGAAAAGAAGCGAAGGCTTTTCAAACTCGTCTATCTTATTTCTCTTCTCTTTCTCTCCATATTTTGGTTGATTTACAGTGCGTTGGAGGATCATGA

Protein sequence

MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVILLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEAKAFQTRLSYFSSLSLHILVDLQCVGGS
Homology
[Close]
BLAST of Carg02478 vs. NCBI nr
Match: KAG7036092.1 (Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 6.1e-61
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
           MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60

Query: 61  LDYVILLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEAKAFQTRLSYFSSLSLHILVD 120
           LDYVILLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEAKAFQTRLSYFSSLSLHILVD
Sbjct: 61  LDYVILLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEAKAFQTRLSYFSSLSLHILVD 120

Query: 121 LQCVGGS 128
           LQCVGGS
Sbjct: 121 LQCVGGS 127

[Close]
BLAST of Carg02478 vs. NCBI nr
Match: XP_021613096.1 (protein cornichon homolog 4-like isoform X2 [Manihot esculenta])

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-30
Identity = 77/132 (58.33%), Postives = 97/132 (73.48%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
           M D+YVWL+SFFF+IAL++++VFQLMCLADLEFDYINPYDSSSRINKV++PE+IT+GVL 
Sbjct: 1   MGDLYVWLISFFFLIALIVIIVFQLMCLADLEFDYINPYDSSSRINKVILPEYITEGVLG 60

Query: 61  LDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEAKAFQTRLSYFSSL 120
           L Y++       LLC  P L + + H   A G C  DIQ  +LGK+A  FQT LS+F  L
Sbjct: 61  LFYLLTGHWCMSLLCG-PYLYYNL-HRKTASGRCDGDIQHASLGKKAATFQTLLSHFPPL 120

Query: 121 SLHILVDLQCVG 126
           S + L D  C+G
Sbjct: 121 SDNFLDDFYCIG 130

[Close]
BLAST of Carg02478 vs. NCBI nr
Match: KAG7028361.1 (Protein cornichon-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-28
Identity = 76/125 (60.80%), Postives = 92/125 (73.60%), Query Frame = 0 

Query: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
           M D+YVWL+SFFF+IALLI++++QLMCLADLEFDYINPYDS+SRINKV+ PEFI+ GVL 
Sbjct: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60

Query: 61  LDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEAKAFQTRLSYFSSL 119
           L Y++       +LC  P + +  V +  AP  CYRDIQ   LGKEA AFQT LS F  L
Sbjct: 61  LFYLLTGHWGMSILCG-PYIYYN-VSTKTAPDRCYRDIQYAKLGKEATAFQTSLSSFPPL 120

[Close]
BLAST of Carg02478 vs. NCBI nr
Match: XP_023532889.1 (protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023532890.1 protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >KAG6606147.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61 LDYVI 66
          + Y++
Sbjct: 61 IFYLL 65

[Close]
BLAST of Carg02478 vs. NCBI nr
Match: XP_022996131.1 (protein cornichon homolog 4-like [Cucurbita maxima] >XP_022996132.1 protein cornichon homolog 4-like [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61 LDYVI 66
          + Y++
Sbjct: 61 IFYLL 65

[Close]
BLAST of Carg02478 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-18
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          M DI+ WL+SFFF+IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL 
Sbjct: 1  MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61 LDYVI-------LLCALPLLQF 76
          + Y++       LLC LP L +
Sbjct: 61 VFYLLTGHWFMTLLC-LPYLYY 81

[Close]
BLAST of Carg02478 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 9.9e-14
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          M D+  W++SF F+  L+I+V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+L 
Sbjct: 1  MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61 LDYVI 66
          L Y++
Sbjct: 61 LYYIL 65

[Close]
BLAST of Carg02478 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-13
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          M +++ W++SF  +I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG L 
Sbjct: 1  MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61 LDYVI 66
          + Y++
Sbjct: 61 VFYLV 65

[Close]
BLAST of Carg02478 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-12
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 22 VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQ 76
          +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL + Y++       LLC LP L 
Sbjct: 14 IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLC-LPYLY 73

[Close]
BLAST of Carg02478 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-11
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 3  DIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLAL- 62
          D+++W++SFF  +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG L L 
Sbjct: 4  DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63 -----DYVILLCALPL 73
                +V  L A+P+
Sbjct: 64 FLLTWHWVFFLVAVPV 79

[Close]
BLAST of Carg02478 vs. ExPASy TrEMBL
Match: A0A6J1K131 (protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491445 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.0e-22
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61 LDYVI 66
          + Y++
Sbjct: 61 IFYLL 65

[Close]
BLAST of Carg02478 vs. ExPASy TrEMBL
Match: A0A6J1H2W0 (protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111459200 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.8e-22
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVL 
Sbjct: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVIPEFITQGVLC 60

Query: 61 LDYVI 66
          + Y++
Sbjct: 61 IFYLL 65

[Close]
BLAST of Carg02478 vs. ExPASy TrEMBL
Match: A0A0A0KMS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157960 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.0e-21
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          MADIYVWLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1  MADIYVWLLSFFFIIALLMLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61 LDYVI-------LLCALPLLQFKI 78
          + Y++       LLC +P L + +
Sbjct: 61 IFYLLSGHWVMSLLC-MPCLYYNL 83

[Close]
BLAST of Carg02478 vs. ExPASy TrEMBL
Match: A0A1S3ATW1 (protein cornichon homolog 4-like OS=Cucumis melo OX=3656 GN=LOC103482667 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.0e-21
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          MADIYVWLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL 
Sbjct: 1  MADIYVWLLSFFFIIALLMLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61 LDYVI-------LLCALPLLQFKI 78
          + Y++       LLC +P L + +
Sbjct: 61 IFYLLSGHWVMSLLC-MPCLYYNL 83

[Close]
BLAST of Carg02478 vs. ExPASy TrEMBL
Match: A0A5D2K0F7 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D08G219500v1 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          M D+++WL SFF ++ALLI++V+QL+CLADLEFDYINPYDSSSRINKVV+PEFI +G L 
Sbjct: 1  MVDLFIWLFSFFILVALLIILVYQLICLADLEFDYINPYDSSSRINKVVLPEFILEGFLC 60

Query: 61 LDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDI 92
            Y++       LLCA P L + + HS  APG CYRDI
Sbjct: 61 FFYLLTGHWVMSLLCA-PYLYYNL-HSETAPGRCYRDI 96

[Close]
BLAST of Carg02478 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-19
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          M DI+ WL+SFFF+IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL 
Sbjct: 1  MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61 LDYVI-------LLCALPLLQF 76
          + Y++       LLC LP L +
Sbjct: 61 VFYLLTGHWFMTLLC-LPYLYY 81

[Close]
BLAST of Carg02478 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 77.8 bits (190), Expect = 7.0e-15
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          M D+  W++SF F+  L+I+V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+L 
Sbjct: 1  MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61 LDYVI 66
          L Y++
Sbjct: 61 LYYIL 65

[Close]
BLAST of Carg02478 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 75.5 bits (184), Expect = 3.5e-14
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 1  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLA 60
          M +++ W++SF  +I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG L 
Sbjct: 1  MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61 LDYVI 66
          + Y++
Sbjct: 61 VFYLV 65

[Close]
BLAST of Carg02478 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-13
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 22 VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQ 76
          +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL + Y++       LLC LP L 
Sbjct: 14 IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLC-LPYLY 73

[Close]
BLAST of Carg02478 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 68.6 bits (166), Expect = 4.3e-12
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 3  DIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLAL- 62
          D+++W++SFF  +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG L L 
Sbjct: 4  DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63 -----DYVILLCALPL 73
                +V  L A+P+
Sbjct: 64 FLLTWHWVFFLVAVPV 79

The following BLAST results are available for this feature:
BLAST of Carg02478 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036092.16.1e-61100.00Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_021613096.12.5e-3058.33protein cornichon homolog 4-like isoform X2 [Manihot esculenta][more]
KAG7028361.15.2e-2860.80Protein cornichon-like 4 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023532889.11.2e-2192.31protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023532890.1 pr... [more]
XP_022996131.11.2e-2192.31protein cornichon homolog 4-like [Cucurbita maxima] >XP_022996132.1 protein corn... [more]
BLAST of Carg02478 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84W043.0e-1862.20Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV... [more]
Q9SZ749.9e-1458.46Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV... [more]
Q8GWT54.9e-1358.46Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV... [more]
Q3EDD77.1e-1262.30Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234... [more]
Q9C7D76.0e-1146.05Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV... [more]
BLAST of Carg02478 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K1316.0e-2292.31protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491445 PE=... [more]
A0A6J1H2W07.8e-2290.77protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111459200 P... [more]
A0A0A0KMS01.0e-2176.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157960 PE=3 SV=1[more]
A0A1S3ATW11.0e-2176.19protein cornichon homolog 4-like OS=Cucumis melo OX=3656 GN=LOC103482667 PE=3 SV... [more]
A0A5D2K0F72.3e-2161.22Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D08G219500v1 P... [more]
BLAST of Carg02478 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G12390.12.1e-1962.20Cornichon family protein [more]
AT4G12090.17.0e-1558.46Cornichon family protein [more]
AT1G62880.13.5e-1458.46Cornichon family protein [more]
AT1G12340.15.0e-1362.30Cornichon family protein [more]
AT3G12180.14.3e-1246.05Cornichon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003377CornichonSMARTSM01398Cornichon_2coord: 4..119
e-value: 1.0E-18
score: 78.2
IPR003377CornichonPFAMPF03311Cornichoncoord: 6..75
e-value: 1.1E-18
score: 67.7
NoneNo IPR availablePANTHERPTHR12290CORNICHON-RELATEDcoord: 1..65
NoneNo IPR availablePANTHERPTHR12290:SF39PROTEIN CORNICHON HOMOLOG 4-LIKEcoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02478-RACarg02478-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009536 plastid
molecular_function GO:0008233 peptidase activity