Carg02444 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02444
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Autophagy-related protein
Location	Carg_Chr02: 8684401 .. 8684867 (+)
RNA-Seq Expression	Carg02444
Synteny	Carg02444

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAATGCCTTCTACTTCTCTCTCTTTCTGGGGCTAAGATTTTGACCCCCAATGACTGCAGGTACCTAGTTCCAGCGGACCTTACCGTGGGACAGTTTGTTTATGTCATCCGTAAAAGAATCAAATTGAGCCCAGAGAAAGCAATATTTATATTTGTGGACAACGTCCTCCCTCCTACAGGTACACCCTTTTTGTCTATAATGTATGTAGGACATGTTTAGGACCAGTTTTGAAAATGAAAGTCCATCTCATAAACAAGTTCGTTTAAGAGATTTCGAAAATTATTAGTGATTATATCGGTTTTTGCAACCAAAGCTTAAAACACAAGTATGAAACGCAAGAATCAAGATCTTTAGAACTTGTTATTATCCAACTTTGCCAAGCAAATCATTTCTTTTTTCCATCTTAAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGACGAAGATGGATTTCTGTAT

mRNA sequence

TCACAATGCCTTCTACTTCTCTCTCTTTCTGGGGCTAAGATTTTGACCCCCAATGACTGCAGGTACCTAGTTCCAGCGGACCTTACCGTGGGACAGTTTGTTTATGTCATCCGTAAAAGAATCAAATTGAGCCCAGAGAAAGCAATATTTATATTTGTGGACAACGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGACGAAGATGGATTTCTGTAT

Coding sequence (CDS)

TCACAATGCCTTCTACTTCTCTCTCTTTCTGGGGCTAAGATTTTGACCCCCAATGACTGCAGGTACCTAGTTCCAGCGGACCTTACCGTGGGACAGTTTGTTTATGTCATCCGTAAAAGAATCAAATTGAGCCCAGAGAAAGCAATATTTATATTTGTGGACAACGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGACGAAGATGGATTTCTGTAT

Protein sequence

SQCLLLLSLSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY

Homology

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: KAG7036126.1 (apg-6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 7.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  SQCLLLLSLSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPT 60
          SQCLLLLSLSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPT
Sbjct: 1  SQCLLLLSLSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPT 60

Query: 61 GAIMSAIYEEKKDEDGFLY 80
          GAIMSAIYEEKKDEDGFLY
Sbjct: 61 GAIMSAIYEEKKDEDGFLY 79

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: RYR58668.1 (hypothetical protein Ahy_A05g024559 isoform A [Arachis hypogaea] >RYR58669.1 hypothetical protein Ahy_A05g024559 isoform B [Arachis hypogaea])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 18 NDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGF 77
          N CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSA+YEEKKDEDGF
Sbjct: 2  NTCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAVYEEKKDEDGF 61

Query: 78 LY 80
          LY
Sbjct: 62 LY 63

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: RZB78086.1 (Autophagy-related protein 8f isoform C [Glycine soja])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 9  LSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIY 68
          LS A  L    CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSAIY
Sbjct: 15 LSYAMKLNDLHCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY 74

Query: 69 EEKKDEDGFLY 80
          +EKKDEDGFLY
Sbjct: 75 DEKKDEDGFLY 85

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: XP_028796824.1 (autophagy-related protein 8B-like [Prosopis alba])

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 10 SGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYE 69
          +G   L P++CRYLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV N+LPPT A+MSAIYE
Sbjct: 10 AGQGNLLPDECRYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYE 69

Query: 70 EKKDEDGFLY 80
          E KDEDGFLY
Sbjct: 70 ENKDEDGFLY 79

[Close]

BLAST of Carg02444 vs. NCBI nr
Match: XP_042504725.1 (autophagy-related protein 8f-like isoform X1 [Macadamia integrifolia] >XP_042504726.1 autophagy-related protein 8f-like isoform X1 [Macadamia integrifolia] >XP_042504727.1 autophagy-related protein 8f-like isoform X1 [Macadamia integrifolia] >XP_042504728.1 autophagy-related protein 8f-like isoform X1 [Macadamia integrifolia])

HSP 1 Score: 121.3 bits (303), Expect = 3.7e-24
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 19  DCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 78
           +CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSAIY+EKKDEDGFL
Sbjct: 51  NCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFL 110

Query: 79  Y 80
           Y
Sbjct: 111 Y 111

[Close]

BLAST of Carg02444 vs. ExPASy Swiss-Prot
Match: A1CQS1 (Autophagy-related protein 8 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) OX=344612 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. ExPASy Swiss-Prot
Match: Q4WJ27 (Autophagy-related protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. ExPASy Swiss-Prot
Match: A2QPN1 (Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. ExPASy Swiss-Prot
Match: Q2UBH5 (Autophagy-related protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. ExPASy Swiss-Prot
Match: Q0C804 (Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=atg8 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 14  ILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKD 73
           I T +  +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT A+MS+IYEE KD
Sbjct: 41  IATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKD 100

Query: 74  EDGFLY 80
           EDGFLY
Sbjct: 101 EDGFLY 106

[Close]

BLAST of Carg02444 vs. ExPASy TrEMBL
Match: A0A445D680 (Autophagy-related protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g024559 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 18 NDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGF 77
          N CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSA+YEEKKDEDGF
Sbjct: 2  NTCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAVYEEKKDEDGF 61

Query: 78 LY 80
          LY
Sbjct: 62 LY 63

[Close]

BLAST of Carg02444 vs. ExPASy TrEMBL
Match: I1LGN8 (Autophagy-related protein OS=Glycine max OX=3847 GN=100781703 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.1e-25
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 9  LSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIY 68
          LS A  L    CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSAIY
Sbjct: 15 LSYAMKLNDLHCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY 74

Query: 69 EEKKDEDGFLY 80
          +EKKDEDGFLY
Sbjct: 75 DEKKDEDGFLY 85

[Close]

BLAST of Carg02444 vs. ExPASy TrEMBL
Match: A0A445HWF4 (Autophagy-related protein OS=Glycine soja OX=3848 GN=D0Y65_028839 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.1e-25
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 9  LSGAKILTPNDCRYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIY 68
          LS A  L    CRYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGAIMSAIY
Sbjct: 15 LSYAMKLNDLHCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY 74

Query: 69 EEKKDEDGFLY 80
          +EKKDEDGFLY
Sbjct: 75 DEKKDEDGFLY 85

[Close]

BLAST of Carg02444 vs. ExPASy TrEMBL
Match: A0A6J1DKS3 (Autophagy-related protein OS=Momordica charantia OX=3673 GN=LOC111021994 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 107

[Close]

BLAST of Carg02444 vs. ExPASy TrEMBL
Match: A0A6J1K978 (Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111491258 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 21 RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
          +YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY
Sbjct: 28 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 86

[Close]

BLAST of Carg02444 vs. TAIR 10
Match: AT2G05630.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY
Sbjct: 49  KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLY 107

[Close]

BLAST of Carg02444 vs. TAIR 10
Match: AT2G05630.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY
Sbjct: 93  KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLY 151

[Close]

BLAST of Carg02444 vs. TAIR 10
Match: AT4G16520.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-25
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLY 107

[Close]

BLAST of Carg02444 vs. TAIR 10
Match: AT4G16520.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-25
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLY
Sbjct: 49  KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLY 107

[Close]

BLAST of Carg02444 vs. TAIR 10
Match: AT2G45170.1 (AUTOPHAGY 8E )

HSP 1 Score: 110.5 bits (275), Expect = 6.1e-25
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 21  RYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY 80
           +YLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY
Sbjct: 50  KYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLY 108

The following BLAST results are available for this feature:

BLAST of Carg02444 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036126.1	7.2e-36	100.00	apg-6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
RYR58668.1	5.7e-25	95.16	hypothetical protein Ahy_A05g024559 isoform A [Arachis hypogaea] >RYR58669.1 hyp...	[more]
RZB78086.1	1.3e-24	87.32	Autophagy-related protein 8f isoform C [Glycine soja]	[more]
XP_028796824.1	2.2e-24	81.43	autophagy-related protein 8B-like [Prosopis alba]	[more]
XP_042504725.1	3.7e-24	95.08	autophagy-related protein 8f-like isoform X1 [Macadamia integrifolia] >XP_042504...	[more]

BLAST of Carg02444 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1CQS1	2.2e-24	83.33	Autophagy-related protein 8 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513....	[more]
Q4WJ27	2.2e-24	83.33	Autophagy-related protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af29...	[more]
A2QPN1	2.2e-24	83.33	Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513...	[more]
Q2UBH5	2.2e-24	83.33	Autophagy-related protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) O...	[more]
Q0C804	2.2e-24	83.33	Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156...	[more]

BLAST of Carg02444 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445D680	2.8e-25	95.16	Autophagy-related protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g024559 PE=3 SV=...	[more]
I1LGN8	6.1e-25	87.32	Autophagy-related protein OS=Glycine max OX=3847 GN=100781703 PE=3 SV=1	[more]
A0A445HWF4	6.1e-25	87.32	Autophagy-related protein OS=Glycine soja OX=3848 GN=D0Y65_028839 PE=3 SV=1	[more]
A0A6J1DKS3	4.0e-24	98.31	Autophagy-related protein OS=Momordica charantia OX=3673 GN=LOC111021994 PE=3 SV...	[more]
A0A6J1K978	4.0e-24	98.31	Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111491258 PE=3 SV=1	[more]

BLAST of Carg02444 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05630.1	2.1e-25	89.83	Ubiquitin-like superfamily protein	[more]
AT2G05630.2	2.1e-25	89.83	Ubiquitin-like superfamily protein	[more]
AT4G16520.1	2.7e-25	88.14	Ubiquitin-like superfamily protein	[more]
AT4G16520.2	2.7e-25	88.14	Ubiquitin-like superfamily protein	[more]
AT2G45170.1	6.1e-25	86.44	AUTOPHAGY 8E	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004241	Autophagy protein Atg8 ubiquitin-like	PFAM	PF02991	Atg8	coord: 11..79 e-value: 1.9E-27 score: 95.5
IPR004241	Autophagy protein Atg8 ubiquitin-like	PANTHER	PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	coord: 19..79
None	No IPR available	GENE3D	3.10.20.90		coord: 9..79 e-value: 1.1E-28 score: 101.7
None	No IPR available	PANTHER	PTHR10969:SF77	AUTOPHAGY-RELATED PROTEIN	coord: 19..79
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 18..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02444-RA	Carg02444-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006995	cellular response to nitrogen starvation
cellular_component	GO:0016020	membrane
cellular_component	GO:0005874	microtubule