Carg02440 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02440
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SHUGOSHIN 2-like isoform X1
Location	Carg_Chr15: 2414427 .. 2418808 (-)
RNA-Seq Expression	Carg02440
Synteny	Carg02440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGCCAATTCCCGGCCACAACCCCCCGGGGGAGGGGAAGTTTCGTTTGGCGGAATTAAATATCTCAGCAAGAGCATTTGGGGGCCCAAGTTTTTCTACTCAGAGTTAGACGAGAACAATCGCGATAGGCTTCCATTTGACAGGAACTGGATTGACTATCGAATTAACCGTGACCCATTGCCTCCGGTAAAGGCTATATAAGACCTGCAAGAAAACAGATATCACATGGTTAATCAGATAGAAAGGCCATGGTAACAGTCCCCCTGCCAGCTTAAGCAATCACAGTATGCAAAGCAAGTGTTCGATAAAATGCCAACAAGAGCCAAAATGTGCGAAACCCACTATTTGGGGCATTTCTCTGGTGAAAACCACAAAACTGGAGTCAATTGGTGTTTATCATCTGAACCTTGAATAGCAAGTTTCAGAGTCTGGAAGAACGATGGAACAGTGAGAATTGAAGGCGAAAGTAGCCATGGCAGGAGGAGGCAGAGATGAGCTCAAAACCCAGATGAAGAACAGAATGCCAGTGGTAGCAAACATATCTGCTTCTAAATTTGGTTGGGAACTGCTTAATCTGAACAAGAACAACAGGAAGAACAAGACAAGAAACAGAACAGACTCACTTTCATGGTACCGCTTCTCTCAAATCTCTCAACAACAATCTACTTAACTAATGAATGAAATACTGCAAAACCGACCTTAGGGCAAACATAAGACAAATCAAAAAAGAAAGAAATGAAGAGCGAACCCCAAAAAATATAGATAGGAAGAAGAAATAAGAGAATTGGAATATATAACATCCTCTGTCTATTCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGGCCCTTTAGGTGTGTCCTTTTGCAGCCTGTTGCTGACATTTTTCTACCTGGTTTTTGGGTCACCCAAATTTGTTCTAGGGATATGAACACATTATTCTAATAGGGTATAATCCAGAGACACAGCCAAGGAAAGGGAAGATGGGCTTCTTCCTTCTTTCTCTGTCTCTCTATTAAAAAAATCTGTGCTGAGCTGAGATGAGACACTCTGTTCTAATGTTCTTTATTTTGATTCTTCATTAATATCTTATGCTTTTTCCTTTTGTGTTAAATGTTGTGTTTCTGGAGCATTTTAGTGGTCAGTGCTACTTCAATTTTTAATTTTCGTCCTCGATCAACCTGTGTTAGTTTATGGTTGTATGCCCGTTCCAAAACCCATATTACATCCTTTTCATTTTAGATAGGCCTTTACCATTTCATATCGGGTCAATACGGGAGTGTATGACTGTTCACTAGAATCATGTCTACACCTAACCGTGCTAAAATACCCCAAAATGTACTAGAGGGAGACATGATCGGTTGTCAAGTTCTCCCTACTCGAATAGTTATATATTTTCAGTTCACCCGAATCATGTCTACACCATAGCTAAAATGCTCCAAAATAGAGTAAGATATGACTAGTTGTCAACTTCTCCTTATTTGAATAGTTGTTGCCTTTGCTTGCATGCTATATAACACTGTTTTCAATCTCTCACTAAATCTTGTTTTCAAACTCTCTTTCGAAAACCTCTTTGCTCCCGTTTTTCAAAACTTTCTTCTTAAATCAGAGCCAGAGACTTGAGCATATGTTGTCTGACCATAGGCGACACGCAAACGAATTGGCTTAATTCACTCGTTGCTGAGGAGTGAATGCCGAAAAAAATATGTGTTTAGTGTTGCATGGAAAATGTCACAATTTTATTATATGGTTTAATTTTAGATAATTAACTGCATGTTAAATATGAACTACTACAGTCTCGAGTGAGAAGTGTATGTTAAATACTGCGGAGTTGGTAGGGTTTAAATTTGTGGTCTCGAGTAAGGAATGCATATTAATTATTGCAATGGACGGATTAGTGAAAGAGTCGAGATATTTGATTTTTAAAATATCGGATAAGGGATTATTTCATTTCTTTATTTTTTTAAAAAAATTCGTTAATTTTAAAAAGAAAAATGAAGAATTTACTCAAACTTAAAAAGTTATTTTTGGTGGTCGGTTTCTTATTTATAATTTTTGCTTTTTTGATAATAACGAAGAGAGCTGAATATTCACTTATTACCTTTAAAATTACAAAGTATACAGCAAAAAAAAAAAAAAAAAAAAACCACGAATAAATAAATAAATAAATAAACAAACAAAAATATCTCAAATTAACTAAATCTAAAATAATAATATTAATAATAATAATAATACTAATATAAAAAAAATATTGATTTGAAAATATATATATTGTTGGAGGTGCAATTCTTAATTGTCAATCTATTTCACCATCTACATTAATTCCATCAACCTTGCATCAAATTAAAATATATTTTTATATTATTTTTAATAAAATTATTTCATGATAGCAAGGATTAGACTGAACTTTATAGGTATAACAAAAGTCAACGAACATTATAAAACAAAAATACTTTTTTTATTAAGAAGAATATCTCGATAATTTTTTTAATTAATTTTTGGTGAGCTATTTGAGAATTTTTTTTTTAAATTTAATTATTTTTTTCATATTCGGGCCTATCAGAGCCCAATACGGCGCCAATATGAAGCCCATCGTCCCCCATTAGAAACGTTGGGTTCGGGGTAGCCGTACGAAGTTTTGAAATAGCTTCGAACTTGCTTCGGACAGCCGTTGTGCTCCCGGTAACATTTTACAATTTTACCCTCAACTTATATCAATTTCGCGCTTAATCCTGCTCGGAATTCATCTCTTTTCAGTAACTCTGTCCTTCCCAAGATCCGTCGTTCGAGCAGAAAGATTTTAGGATTCAACCATAGAGTCTCCAACATGGAGTGTAGCATTTCGCTCGATTTGAAGAACTACGGTGTTGGAGGTACTTTTTGTTTTTGATTTCTTCCATTAGGACTAACTTCTTGATCTGTTCCCTCTATTGCTTTCGAATTCTGCAGATTCCTTACTGTTAGTTTTCCTGAAAATCATTCGATTTTGATGATTTGAGGTTGCTTAATTGGAATCCTAATTGCATTTCGTGGTTTATATGGTTTAACAAGGATTCTAGGTTTTGAATGCACACCATTTACTCCCGTTGTTTTTACGATTTTTAGGGTTTTTAATCTGCATGCGTTTTTGTAGATTTTTTGGAGAATAATTGAATTTGGATGAACTACCTCGTGCTGTTCTTAGTAAATTGAAGCTAGTCATTCACTAGTTTAGAATGCATTGAAAGAGTTTGTTGATATTTAGCTAGTGATTTTCAAGTTTGTATTAGTGACTGGAAATTTGGTTTTTGGTCAAAACATGGAAATAGCTGGAGTGAAAACGATGAAGAGCTCCAAAGTAGGAGGCGCCCAGAGGAAACGGCTTTCCGATATAAGCAACTTGAAGGAGCAACCTGTACTGCAGAAGGGAGATACGAAGCAGCAGTCTAGTTTGCTTAAGACCTATGAATATGTTGATAAGTTACAGAAGGTACTTCTGATGTGTTCTATAAGCTGCCCAGTTTGATTGGCTCATCTTATTGATGATGCTTTTATTTTTCTTTCCAGGAAAATATGGCACTTACGAAGGTTCTTGCAGAAAGAAAGTATCCTTTGTGACAGTCATAATCCATAACAGAAATAGTCTTTGTTTTTCTGTTCGGGCTTTATATATACATACGTACGTAAGTACATATATAATCGATGAACTTTCTTTTTCCTTGATGAGTATTTTCGAATAGTCGTATAATTGAGATAAGTGGAAATGAGTTAGAGACATTAAGAACCAATTTTCAGAAATTGCAGCAGCAGAATCTGCAATTCGCCCAAGCAAACAGTCAAATGTTAGCGGTAATCTTGCACCTGCATCTTTGTGTCTTTAGTTTCCATTTTATCACTTGTTCATGGCAAGCTAGTATCCTAGAAAATAAATTTTAATGATCTTCTACACTTGACGACGTGGTTCTTTCTATTTTTAGGAACTTAATTCAGGTAAAGAAAGGGTGAGTGATATTTCTATCATCTGAAATTTGATTTAGTTTGCAGATGGAACCCTTTAATTTGCTGCAACTGAATGTAATTTATGGTTCTGCAGCTGAAAGACCTTCAACACGAGCTTGGATGTAAAAATGCATTCTTTATGTCGAAGGAAAAACTGATTTGAGGTACTTTAATTTTTATTGTTTCATTTAACAAAATTTGCAATTAAAGTGCTTATTGATTATTGACACCGAAACTCTTCTCCAGAGAAGAAAAGAAAAAGCAGGCGACATGTTCAGCCTGGAGGGGTAATAAAAACCACAATTACTGTTGTTATTTCTTTAAGTAAATATTTCTTATGCTTCTTAACCCTTTCTTTCTCCTACCTTCAAGGTAGGGACCGCCGAGTGTAGTGAG

mRNA sequence

ATGCCGGCCAATTCCCGGCCACAACCCCCCGGGGGAGGGGAAGTTTCGTTTGGCGGAATTAAATATCTCAGCAAGAGCATTTGGGGGCCCAAGTTTTTCTACTCAGAGTTAGACGAGAACAATCGCGATAGGCTTCCATTTGACAGGAACTGGATTGACTATCGAATTAACCGTGACCCATTGCCTCCGGCGAAAGTAGCCATGGCAGGAGGAGGCAGAGATGAGCTCAAAACCCAGATGAAGAACAGAATGCCAGTGGTAGCAAACATATCTGCTTCTAAATTTGGTTGGGAACTGCTTAATCTGAACAAGAACAACAGGAAGAACAAGACAAGAAACAGAACAGACTCACTTTCATGTAACTCTGTCCTTCCCAAGATCCGTCGTTCGAGCAGAAAGATTTTAGGATTCAACCATAGAGTCTCCAACATGGAGTGTAGCATTTCGCTCGATTTGAAGAACTACGGTGTTGGAGTGACTGGAAATTTGGTTTTTGGTCAAAACATGGAAATAGCTGGAGTGAAAACGATGAAGAGCTCCAAAGTAGGAGGCGCCCAGAGGAAACGGCTTTCCGATATAAGCAACTTGAAGGAGCAACCTGTACTGCAGAAGGGAGATACGAAGCAGCAGTCTAGTTTGCTTAAGACCTATGAATATGTTGATAAGTTACAGAAGGAAAATATGGCACTTACGAAGGTTCTTGCAGAAAGAAATCGTATAATTGAGATAAGTGGAAATGAGTTAGAGACATTAAGAACCAATTTTCAGAAATTGCAGCAGCAGAATCTGCAATTCGCCCAAGCAAACAGTCAAATGTTAGCGCTGAAAGACCTTCAACACGAGCTTGGATGTAAAAATGCATTCTTTATGTCGAAGGAAAAACTGATTTGAGGTACTTTAATTTTTATTGTTTCATTTAACAAAATTTGCAATTAAAGTGCTTATTGATTATTGACACCGAAACTCTTCTCCAGAGAAGAAAAGAAAAAGCAGGCGACATGTTCAGCCTGGAGGGGTAGGGACCGCCGAGTGTAGTGAG

Coding sequence (CDS)

ATGCCGGCCAATTCCCGGCCACAACCCCCCGGGGGAGGGGAAGTTTCGTTTGGCGGAATTAAATATCTCAGCAAGAGCATTTGGGGGCCCAAGTTTTTCTACTCAGAGTTAGACGAGAACAATCGCGATAGGCTTCCATTTGACAGGAACTGGATTGACTATCGAATTAACCGTGACCCATTGCCTCCGGCGAAAGTAGCCATGGCAGGAGGAGGCAGAGATGAGCTCAAAACCCAGATGAAGAACAGAATGCCAGTGGTAGCAAACATATCTGCTTCTAAATTTGGTTGGGAACTGCTTAATCTGAACAAGAACAACAGGAAGAACAAGACAAGAAACAGAACAGACTCACTTTCATGTAACTCTGTCCTTCCCAAGATCCGTCGTTCGAGCAGAAAGATTTTAGGATTCAACCATAGAGTCTCCAACATGGAGTGTAGCATTTCGCTCGATTTGAAGAACTACGGTGTTGGAGTGACTGGAAATTTGGTTTTTGGTCAAAACATGGAAATAGCTGGAGTGAAAACGATGAAGAGCTCCAAAGTAGGAGGCGCCCAGAGGAAACGGCTTTCCGATATAAGCAACTTGAAGGAGCAACCTGTACTGCAGAAGGGAGATACGAAGCAGCAGTCTAGTTTGCTTAAGACCTATGAATATGTTGATAAGTTACAGAAGGAAAATATGGCACTTACGAAGGTTCTTGCAGAAAGAAATCGTATAATTGAGATAAGTGGAAATGAGTTAGAGACATTAAGAACCAATTTTCAGAAATTGCAGCAGCAGAATCTGCAATTCGCCCAAGCAAACAGTCAAATGTTAGCGCTGAAAGACCTTCAACACGAGCTTGGATGTAAAAATGCATTCTTTATGTCGAAGGAAAAACTGATTTGA

Protein sequence

MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDPLPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELLNLNKNNRKNKTRNRTDSLSCNSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI

Homology

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BLAST of Carg02440 vs. NCBI nr
Match: KAG7016323.1 (SHUGOSHIN 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 582.0 bits (1499), Expect = 2.9e-162
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDP 60
           MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDP
Sbjct: 1   MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDP 60

Query: 61  LPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELLNLNKNNRKNKTRNRTDSLSC 120
           LPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELLNLNKNNRKNKTRNRTDSLSC
Sbjct: 61  LPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELLNLNKNNRKNKTRNRTDSLSC 120

Query: 121 NSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSS 180
           NSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSS
Sbjct: 121 NSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSS 180

Query: 181 KVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRI 240
           KVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRI
Sbjct: 181 KVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRI 240

Query: 241 IEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI 297
           IEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI
Sbjct: 241 IEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI 296

[Close]

BLAST of Carg02440 vs. NCBI nr
Match: KAG7016325.1 (SHUGOSHIN 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.4 bits (651), Expect = 6.1e-64
Identity = 141/155 (90.97%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 121 NSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSS 180
           NSVLPKIRRSSRKILGFNHRVSNMECSISLD KNYGVG +      QNMEIAGVKTMKSS
Sbjct: 1   NSVLPKIRRSSRKILGFNHRVSNMECSISLDSKNYGVGAS------QNMEIAGVKTMKSS 60

Query: 181 KVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRI 240
           KVGGAQRKRLSDISNLKEQPVLQK DT QQSSLLKTYEYVDKLQKENMALTKVLAERN I
Sbjct: 61  KVGGAQRKRLSDISNLKEQPVLQKRDTTQQSSLLKTYEYVDKLQKENMALTKVLAERNHI 120

Query: 241 IEISGNELETLRTNFQKLQQQNLQFAQANSQMLAL 276
           IEIS NELETLRTNFQKLQQQNLQFAQANSQMLA+
Sbjct: 121 IEISRNELETLRTNFQKLQQQNLQFAQANSQMLAV 149

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BLAST of Carg02440 vs. NCBI nr
Match: XP_023550314.1 (SHUGOSHIN 2-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 4.6e-59
Identity = 134/158 (84.81%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ
Sbjct: 1   MECSISLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN    S++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILRSRK 152

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BLAST of Carg02440 vs. NCBI nr
Match: XP_023550313.1 (SHUGOSHIN 2-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 4.6e-59
Identity = 134/158 (84.81%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ
Sbjct: 1   MECSISLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN    S++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILRSRK 152

[Close]

BLAST of Carg02440 vs. NCBI nr
Match: XP_023550311.1 (SHUGOSHIN 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 4.6e-59
Identity = 134/158 (84.81%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ
Sbjct: 1   MECSISLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN    S++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILRSRK 152

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BLAST of Carg02440 vs. ExPASy Swiss-Prot
Match: Q0WTB8 (SHUGOSHIN 2 OS=Arabidopsis thaliana OX=3702 GN=SGO2 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.2e-19
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 179 SSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLL-KTYEYVDKLQKENMALTKVLAER 238
           S++V G+Q+       N+K+   + K +T+Q+ ++L  + EY  KLQKENM L K LA R
Sbjct: 11  SNRVLGSQK------DNVKQ---MDKEETQQKENMLFSSQEYAAKLQKENMTLMKALAHR 70

Query: 239 NRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFF 296
           N+++E+SG E++ LR N + +Q++NLQ AQANSQMLA        LKDLQHELGCKNA  
Sbjct: 71  NKLVELSGIEIQKLRINLRSVQEKNLQLAQANSQMLAELNTNRDRLKDLQHELGCKNALL 127

[Close]

BLAST of Carg02440 vs. ExPASy Swiss-Prot
Match: F4J3S1 (SHUGOSHIN 1 OS=Arabidopsis thaliana OX=3702 GN=SGO1 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-15
Identity = 57/134 (42.54%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 173 GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK--QQSSLLKTYEYVDKLQKENMAL 232
           G K +    +  AQR++L DI+NL+ Q  L     K  QQ+ L+ + E  + LQKEN  L
Sbjct: 24  GEKMVLEPPMNSAQRRKLGDITNLQNQKNLMNQGAKHQQQAILISSKENAENLQKENTKL 83

Query: 233 TKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHEL 292
            KV+ ER+ I     ++L+ LR  FQK+Q+QNL  AQAN+++LA        LK LQHEL
Sbjct: 84  MKVVMERDGI----KSDLKKLRIEFQKVQEQNLLLAQANTRILAEFNTSKDQLKVLQHEL 143

Query: 293 GCKNAFFMSKEKLI 297
           GCKN   M+++ L+
Sbjct: 144 GCKNGLVMARKMLL 153

[Close]

BLAST of Carg02440 vs. ExPASy Swiss-Prot
Match: E3VXF2 (Shugoshin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SGO1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-08
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 225 KENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LK 284
           KEN  L  +LAERN++IE+S  EL+ +R   Q +QQ+NLQ  QANSQM A        +K
Sbjct: 55  KENAKLRHLLAERNKVIEVSRVELQKIRLALQAMQQKNLQLVQANSQMFAEINQGKDRIK 114

Query: 285 DLQHELGCKNAFFMSK 293
            LQHEL C  A    K
Sbjct: 115 LLQHELACTIAVLKVK 130

[Close]

BLAST of Carg02440 vs. ExPASy Swiss-Prot
Match: Q4QSC8 (Shugoshin-1 OS=Zea mays OX=4577 GN=SGO1 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.0e-05
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 220 VDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA----- 279
           V  L KEN  L  +L E+ +II++S  E+  LR   Q  +QQNL   Q NSQMLA     
Sbjct: 59  VPDLVKENTKLLTLLNEKTKIIDLSRVEIYKLRLALQASKQQNLHLTQTNSQMLAEINTG 118

Query: 280 ---LKDLQHELGCKNAFFMSKE 294
              +K LQHEL C  A    K+
Sbjct: 119 KDRIKMLQHELSCTTALLKVKD 140

[Close]

BLAST of Carg02440 vs. ExPASy TrEMBL
Match: A0A6J1JX72 (SHUGOSHIN 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 129/158 (81.65%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQ
Sbjct: 1   MECNTSLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGSQRKRLSDISNLKEQPILQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           K DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KRDTKPQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN   MS++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILMSRK 152

[Close]

BLAST of Carg02440 vs. ExPASy TrEMBL
Match: A0A6J1JRF5 (SHUGOSHIN 2-like isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 129/158 (81.65%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQ
Sbjct: 1   MECNTSLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGSQRKRLSDISNLKEQPILQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           K DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KRDTKPQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN   MS++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILMSRK 152

[Close]

BLAST of Carg02440 vs. ExPASy TrEMBL
Match: A0A6J1JX77 (SHUGOSHIN 2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 129/158 (81.65%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQ
Sbjct: 1   MECNTSLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGSQRKRLSDISNLKEQPILQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           K DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KRDTKPQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN   MS++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILMSRK 152

[Close]

BLAST of Carg02440 vs. ExPASy TrEMBL
Match: A0A6J1K0U1 (SHUGOSHIN 2-like isoform X6 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 129/158 (81.65%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQ
Sbjct: 1   MECNTSLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGSQRKRLSDISNLKEQPILQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           K DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KRDTKPQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN   MS++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILMSRK 152

[Close]

BLAST of Carg02440 vs. ExPASy TrEMBL
Match: A0A6J1JYY1 (SHUGOSHIN 2-like isoform X7 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 129/158 (81.65%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 144 MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQ 203
           MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQ
Sbjct: 1   MECNTSLDSKNYGVGAS------QNMEIAGVKTMKSSKVGGSQRKRLSDISNLKEQPILQ 60

Query: 204 KGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 263
           K DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL
Sbjct: 61  KRDTKPQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNL 120

Query: 264 QFAQANSQMLA--------LKDLQHELGCKNAFFMSKE 294
           QFAQANSQMLA        LK LQHELGCKN   MS++
Sbjct: 121 QFAQANSQMLAELNSGKERLKALQHELGCKNGILMSRK 152

[Close]

BLAST of Carg02440 vs. TAIR 10
Match: AT5G04320.2 (Shugoshin C terminus )

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-20
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 179 SSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLL-KTYEYVDKLQKENMALTKVLAER 238
           S++V G+Q+       N+K+   + K +T+Q+ ++L  + EY  KLQKENM L K LA R
Sbjct: 11  SNRVLGSQK------DNVKQ---MDKEETQQKENMLFSSQEYAAKLQKENMTLMKALAHR 70

Query: 239 NRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFF 296
           N+++E+SG E++ LR N + +Q++NLQ AQANSQMLA        LKDLQHELGCKNA  
Sbjct: 71  NKLVELSGIEIQKLRINLRSVQEKNLQLAQANSQMLAELNTNRDRLKDLQHELGCKNALL 127

[Close]

BLAST of Carg02440 vs. TAIR 10
Match: AT3G10440.1 (Shugoshin C terminus )

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-16
Identity = 57/134 (42.54%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 173 GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK--QQSSLLKTYEYVDKLQKENMAL 232
           G K +    +  AQR++L DI+NL+ Q  L     K  QQ+ L+ + E  + LQKEN  L
Sbjct: 24  GEKMVLEPPMNSAQRRKLGDITNLQNQKNLMNQGAKHQQQAILISSKENAENLQKENTKL 83

Query: 233 TKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHEL 292
            KV+ ER+ I     ++L+ LR  FQK+Q+QNL  AQAN+++LA        LK LQHEL
Sbjct: 84  MKVVMERDGI----KSDLKKLRIEFQKVQEQNLLLAQANTRILAEFNTSKDQLKVLQHEL 143

Query: 293 GCKNAFFMSKEKLI 297
           GCKN   M+++ L+
Sbjct: 144 GCKNGLVMARKMLL 153

[Close]

BLAST of Carg02440 vs. TAIR 10
Match: AT5G04320.1 (Shugoshin C terminus )

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-14
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 228 MALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQ 287
           M L K LA RN+++E+SG E++ LR N + +Q++NLQ AQANSQMLA        LKDLQ
Sbjct: 1   MTLMKALAHRNKLVELSGIEIQKLRINLRSVQEKNLQLAQANSQMLAELNTNRDRLKDLQ 60

Query: 288 HELGCKNAFFMSKEKL 296
           HELGCKNA    K+ L
Sbjct: 61  HELGCKNALLKVKKHL 76

The following BLAST results are available for this feature:

BLAST of Carg02440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016323.1	2.9e-162	100.00	SHUGOSHIN 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7016325.1	6.1e-64	90.97	SHUGOSHIN 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023550314.1	4.6e-59	84.81	SHUGOSHIN 2-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023550313.1	4.6e-59	84.81	SHUGOSHIN 2-like isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023550311.1	4.6e-59	84.81	SHUGOSHIN 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg02440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WTB8	8.2e-19	47.62	SHUGOSHIN 2 OS=Arabidopsis thaliana OX=3702 GN=SGO2 PE=2 SV=1	[more]
F4J3S1	2.5e-15	42.54	SHUGOSHIN 1 OS=Arabidopsis thaliana OX=3702 GN=SGO1 PE=3 SV=1	[more]
E3VXF2	3.8e-08	48.68	Shugoshin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SGO1 PE=2 SV=1	[more]
Q4QSC8	1.0e-05	42.68	Shugoshin-1 OS=Zea mays OX=4577 GN=SGO1 PE=2 SV=2	[more]

BLAST of Carg02440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JX72	4.6e-57	81.65	SHUGOSHIN 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=...	[more]
A0A6J1JRF5	4.6e-57	81.65	SHUGOSHIN 2-like isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=...	[more]
A0A6J1JX77	4.6e-57	81.65	SHUGOSHIN 2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=...	[more]
A0A6J1K0U1	4.6e-57	81.65	SHUGOSHIN 2-like isoform X6 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=...	[more]
A0A6J1JYY1	4.6e-57	81.65	SHUGOSHIN 2-like isoform X7 OS=Cucurbita maxima OX=3661 GN=LOC111489140 PE=3 SV=...	[more]

BLAST of Carg02440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04320.2	5.8e-20	47.62	Shugoshin C terminus	[more]
AT3G10440.1	1.7e-16	42.54	Shugoshin C terminus	[more]
AT5G04320.1	2.1e-14	55.26	Shugoshin C terminus	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 241..268
IPR044693	Shugoshin, plant	PANTHER	PTHR34373	SHUGOSHIN 2	coord: 174..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02440-RA	Carg02440-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034090	maintenance of meiotic sister chromatid cohesion
biological_process	GO:0045144	meiotic sister chromatid segregation
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0005634	nucleus