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Carg02423 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTCTTCTGGAATAAACTTGGTGATGACTGTGATTGGATTCACTGTGAGCACTTTGTTCATCGTGTTCGTCTGCACAAGGCTTGTTTGTGCTCGGATTCATCTCAATGCTTCAAGGCGCTCCTTCCCAATCGCTTCTAGATCCGATCTCAGTGGGGTGAGCATGTTTTTTTCTTGTTTAATTCGCTTCCAGATTTGATGTGGATATATCTATTTTGATTTTGTTCTAGTTAGTTGATTTTTGTTCTTGTTGGTCGCTAATTTCCCTTGGAACTCGTCTCCCTTTTTGTTACTCTTTCTAGGCTTAATTTCTGTATGCTAATTCATATGCCATAGATTTATCACTGGAAACTGGATATGATTGCCTCTCTGCATTGTAGTTAAAGTTCCATCACTTCAATACTTGCTTTTCTCCCATTTTCATGTAGTTTCAGGATTCATTTCATGCTGTGGTTTTACTTTGTTTCGATTTCGCCCCCTTTTTTCGCTCTCTTTTCGGTCTGCCGGGGCCTATTTCATGTATTTGGATATGGTGTTGTTCGGTTATCCATCTTACATAGTTCTGCTAATACATTTTTTGTGAAACCACGGATCTCCACAATGGTATGATGTTGTCCACTTTGAGCATAAGCTCTCTTACTTTTGCTTTTGGTTTCCCCCAAGAGGTCTCGTACGAGTGAAGATGTATTCCTGGTCATCCTCTTAATTAGCCTACATGGGACTACTCCTTTCAATAATCCTCAACAATTCTTCCCTCAAACAAAGTACACCATTTAGCATCTCTTGAGGTCTCTTATATGGAGCTCTCGAACAACCTCTCCTTAATCGAGGCTCGACTCCTTCTCTAGAGCCGTCGAACAAAGTACACTCTTTAGTCACTTTTTTATTTGATACTTGAGGATTTGATTGGCATGGCTAAGTTAAGGGCATGACTCTGATACCATGTTAGAAACCACGGACCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTAACTTTGCTTTTGGTTTCTCCAAAAGACCTCGTACTAACGAAGATGTATTCCTTACTTATAAACTCATGATCATCCTCTTAATTAGCCAACGTGGGTCTACTTCTCTCAGTAATTCTCAACAATTTCTTGATAGCCTCATTGTCGCTTTTAGTCGGGAGGTTATACAGAAACAAAAAGGGTCTCCGAAAAAACTCAATTCTTGTTTGTTCTCATAGGCAGTGGTTGTGCATTCATATTTCACAATTCACATTTCTACTCCTTTTTCTTTTTCATATGCTACTTTTAGACTTTGTTCAGGCTTTAGGTTGATTCGTTTATGGATATTTCTTTATTTACACGTCGAACTTCTTTGTTGCAGCTGGAACGGGGATTACACGGTCTAGAGCCTTTGGTTGTAGCCAACTTTCCAACTAAGAAGTACAGTGATGAATACTTCTCGTCTATGAGAAATTCTCAGTACGTGCCCCCTTCAATTCAGTCTCTCATTTCATTCGTTTTCATGATTTTTCAAGAAAATCCCTATCATTTTAATGTAAAGCTTAATGACTTTATCAATGAAAGGAGAGAGACATGTGACTGCATGCTTTACCTATGGGAAAATGATGAGCTTGCAATGAGTTGGTCTTGTAGTTGATTGGTTTTTCCCTAAGTTACTAGAAATCGTGACTTTTTTATGAGACGTTTTGATAAGTTGGCTTTAAACATAGTCCTAATCAGCCTGGGCCCTTAGCAATAGATGTCGATAGAGGCATTACTCGTTAAAATCTCGTATGGCTTGGAACAAACGATAACGTGTTATGGACATGATTCAATCATGCTCCATTAGTTTCACTCTACCTTGGAGCTTTCTGAAGATATTCTTATACAATATTGAGTTCTCTTAGCTTGAGTATACCTAAAGTGTTAAGAACTTAAAACCCCTTATGCAGATCTTCTTTGCTCCCTAGCTCTCATGAAACAACCTTTGCTTGCAATATTTTGAATTAACTCGAGCTCGAGTTCCCTATTCTGGTTGCATTATGTTTAAAGAAACAATACACGACCAAGGGAGAACTCGAACTCCCTATTCTTTCCATTACCAGAGATCCCAAATGATCAAAAGATGTCTGCTCCCCTCTTGTTAACAAACAACTGAACTAAATGAGCCCAACTCTTAAGTTCATTACAGAAGTCCTCTCCCACAACTCACAAATCAAGCCTTACTACGACTCCTTCAGCCCTTCTCCTTCCATACAATTCCACTCTAGGAGGAATATTGAATCTATTGAGCTAGGTTTCAAATGTATACCACACCATCTTGATCATCTATGTGATCCCAGACTGATTGGTTGTAATGGCCCAAGCCCATTGCTAGCAAATATTATCCTCTTTGGACTTTTTATTTGGGCTTTCCCTCAAGGTTTTTAAAACGCGTCTGCTAGAAAGAGGTTTTCACACCCTTACAAAAAATGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTTACCTTAGTGATGTTAGAGAAGTGGCAGGTATCATGAAATGTATGCATGGCCGTGGATGCTTTTCAAGAATTCTTCTTATAAATGGGAGAAGTTTCTGTAGAATACCATTCCTGAATGTCTCTCTCTCGTAGACTCGTACTTAGATAACACAAATGGTTTCTGCTGTGCGTGATTTTGTTGTGATTCCTTAGCGGAAAAAAAGACGAGATGGTATTTTGATCCGAGGAAACAAGGTGGATTTCCGAATCTAGTCCAAAAAGTGATGATATTTAAGATTGTGATTACAATTCCTTTTGGTTTTATGTGATGCTACATTCACGTTTGTTTAGCAAATCATGGAAAAACACAACACAGCCAAATTAGATTCTGTTTTGAATGGCAGATGCACAGTTTGCTTGGCAGACTATCATAGTGAAGACTTATTGCGCATTCTTCCCTACTGTGGACACTCCTTCCATGTGAACTGCATAGACATATGGCTGCATCAGAACCTAACATGCCCGGTTTGTCGTATATCGTTACGTGACGTCCCAGACAAGAAACGAACGATGCAACCCTTGTTTAGTTCAGCAATTCGCTCCCATTACAACCTCAACTCAGATGCCTATGCTCATCCCTGCCACGAGTTCCCATTACAAGACCTCGAAAACAGTGGGTTGGATCAACCAATCCAACAAGAGAACCGCCGCTCACCTAGGACCAATGGAGCAGCAGAAGCCCTTGAGAACACGTCCTCGTTCATCATCAAAGGTAACCAGAATAGTAAAAATATAGAAAGCCCATCAAATGCTTGAACTTCCCTTAACTATGTGCTTAGAAAGATTGTGTGTCCTGTTGTTTACCACTGTGTATAAGCGCTGTTTGTAGTGAATTATTAGCTCATCTCTCTCTCTCTCTCTCTCTCTTATATTTGAACCAATGCATGCTGAGAAGAGGCTTTTAAGTGTTCAGC ATGATGTCTTCTGGAATAAACTTGGTGATGACTGTGATTGGATTCACTGTGAGCACTTTGTTCATCGTGTTCGTCTGCACAAGGCTTGTTTGTGCTCGGATTCATCTCAATGCTTCAAGGCGCTCCTTCCCAATCGCTTCTAGATCCGATCTCAGTGGGCTGGAACGGGGATTACACGGTCTAGAGCCTTTGGTTGTAGCCAACTTTCCAACTAAGAAGTACAGTGATGAATACTTCTCGTCTATGAGAAATTCTCAATGCACAGTTTGCTTGGCAGACTATCATAGTGAAGACTTATTGCGCATTCTTCCCTACTGTGGACACTCCTTCCATGTGAACTGCATAGACATATGGCTGCATCAGAACCTAACATGCCCGGTTTGTCGTATATCGTTACGTGACGTCCCAGACAAGAAACGAACGATGCAACCCTTGTTTAGTTCAGCAATTCGCTCCCATTACAACCTCAACTCAGATGCCTATGCTCATCCCTGCCACGAGTTCCCATTACAAGACCTCGAAAACAGTGGGTTGGATCAACCAATCCAACAAGAGAACCGCCGCTCACCTAGGACCAATGGAGCAGCAGAAGCCCTTGAGAACACGTCCTCGTTCATCATCAAAGGTAACCAGAATAGTAAAAATATAGAAAGCCCATCAAATGCTTGAACTTCCCTTAACTATGTGCTTAGAAAGATTGTGTGTCCTGTTGTTTACCACTGTGTATAAGCGCTGTTTGTAGTGAATTATTAGCTCATCTCTCTCTCTCTCTCTCTCTCTTATATTTGAACCAATGCATGCTGAGAAGAGGCTTTTAAGTGTTCAGC ATGATGTCTTCTGGAATAAACTTGGTGATGACTGTGATTGGATTCACTGTGAGCACTTTGTTCATCGTGTTCGTCTGCACAAGGCTTGTTTGTGCTCGGATTCATCTCAATGCTTCAAGGCGCTCCTTCCCAATCGCTTCTAGATCCGATCTCAGTGGGCTGGAACGGGGATTACACGGTCTAGAGCCTTTGGTTGTAGCCAACTTTCCAACTAAGAAGTACAGTGATGAATACTTCTCGTCTATGAGAAATTCTCAATGCACAGTTTGCTTGGCAGACTATCATAGTGAAGACTTATTGCGCATTCTTCCCTACTGTGGACACTCCTTCCATGTGAACTGCATAGACATATGGCTGCATCAGAACCTAACATGCCCGGTTTGTCGTATATCGTTACGTGACGTCCCAGACAAGAAACGAACGATGCAACCCTTGTTTAGTTCAGCAATTCGCTCCCATTACAACCTCAACTCAGATGCCTATGCTCATCCCTGCCACGAGTTCCCATTACAAGACCTCGAAAACAGTGGGTTGGATCAACCAATCCAACAAGAGAACCGCCGCTCACCTAGGACCAATGGAGCAGCAGAAGCCCTTGAGAACACGTCCTCGTTCATCATCAAAGGTAACCAGAATAGTAAAAATATAGAAAGCCCATCAAATGCTTGA MMSSGINLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFPIASRSDLSGLERGLHGLEPLVVANFPTKKYSDEYFSSMRNSQCTVCLADYHSEDLLRILPYCGHSFHVNCIDIWLHQNLTCPVCRISLRDVPDKKRTMQPLFSSAIRSHYNLNSDAYAHPCHEFPLQDLENSGLDQPIQQENRRSPRTNGAAEALENTSSFIIKGNQNSKNIESPSNA Homology
BLAST of Carg02423 vs. NCBI nr
Match: KAG7016306.1 (RING-H2 finger protein ATL7, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
BLAST of Carg02423 vs. NCBI nr
Match: XP_022939748.1 (putative RING-H2 finger protein ATL71 [Cucurbita moschata] >KAG6578776.1 RING-H2 finger protein ATL7, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 449.5 bits (1155), Expect = 1.7e-122 Identity = 221/222 (99.55%), Postives = 222/222 (100.00%), Query Frame = 0
BLAST of Carg02423 vs. NCBI nr
Match: XP_022993424.1 (putative RING-H2 finger protein ATL71 [Cucurbita maxima]) HSP 1 Score: 435.6 bits (1119), Expect = 2.5e-118 Identity = 216/222 (97.30%), Postives = 219/222 (98.65%), Query Frame = 0
BLAST of Carg02423 vs. NCBI nr
Match: XP_023551420.1 (putative RING-H2 finger protein ATL71 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 434.1 bits (1115), Expect = 7.2e-118 Identity = 216/222 (97.30%), Postives = 218/222 (98.20%), Query Frame = 0
BLAST of Carg02423 vs. NCBI nr
Match: XP_008456580.1 (PREDICTED: RING-H2 finger protein ATL8-like [Cucumis melo] >TYK11748.1 RING-H2 finger protein ATL8-like [Cucumis melo var. makuwa]) HSP 1 Score: 356.3 bits (913), Expect = 1.9e-94 Identity = 184/227 (81.06%), Postives = 201/227 (88.55%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 9.1e-15 Identity = 47/131 (35.88%), Postives = 64/131 (48.85%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy Swiss-Prot
Match: O64762 (RING-H2 finger protein ATL38 OS=Arabidopsis thaliana OX=3702 GN=ATL38 PE=2 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.7e-14 Identity = 41/142 (28.87%), Postives = 75/142 (52.82%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.5e-14 Identity = 33/84 (39.29%), Postives = 55/84 (65.48%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 4.5e-14 Identity = 44/152 (28.95%), Postives = 80/152 (52.63%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2) HSP 1 Score: 79.3 bits (194), Expect = 5.9e-14 Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy TrEMBL
Match: A0A6J1FMG8 (putative RING-H2 finger protein ATL71 OS=Cucurbita moschata OX=3662 GN=LOC111445538 PE=4 SV=1) HSP 1 Score: 449.5 bits (1155), Expect = 8.1e-123 Identity = 221/222 (99.55%), Postives = 222/222 (100.00%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy TrEMBL
Match: A0A6J1K062 (putative RING-H2 finger protein ATL71 OS=Cucurbita maxima OX=3661 GN=LOC111489441 PE=4 SV=1) HSP 1 Score: 435.6 bits (1119), Expect = 1.2e-118 Identity = 216/222 (97.30%), Postives = 219/222 (98.65%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy TrEMBL
Match: A0A5D3CKS4 (RING-H2 finger protein ATL8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00660 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 9.3e-95 Identity = 184/227 (81.06%), Postives = 201/227 (88.55%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy TrEMBL
Match: A0A1S3C364 (RING-H2 finger protein ATL8-like OS=Cucumis melo OX=3656 GN=LOC103496494 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 9.3e-95 Identity = 184/227 (81.06%), Postives = 201/227 (88.55%), Query Frame = 0
BLAST of Carg02423 vs. ExPASy TrEMBL
Match: A0A0A0KB30 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044540 PE=4 SV=1) HSP 1 Score: 355.1 bits (910), Expect = 2.1e-94 Identity = 184/227 (81.06%), Postives = 202/227 (88.99%), Query Frame = 0
BLAST of Carg02423 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein ) HSP 1 Score: 82.0 bits (201), Expect = 6.5e-16 Identity = 47/131 (35.88%), Postives = 64/131 (48.85%), Query Frame = 0
BLAST of Carg02423 vs. TAIR 10
Match: AT2G34990.1 (RING/U-box superfamily protein ) HSP 1 Score: 80.5 bits (197), Expect = 1.9e-15 Identity = 41/142 (28.87%), Postives = 75/142 (52.82%), Query Frame = 0
BLAST of Carg02423 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein ) HSP 1 Score: 80.1 bits (196), Expect = 2.5e-15 Identity = 33/84 (39.29%), Postives = 55/84 (65.48%), Query Frame = 0
BLAST of Carg02423 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein ) HSP 1 Score: 79.7 bits (195), Expect = 3.2e-15 Identity = 44/152 (28.95%), Postives = 80/152 (52.63%), Query Frame = 0
BLAST of Carg02423 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein ) HSP 1 Score: 79.3 bits (194), Expect = 4.2e-15 Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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