Carg02402 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02402
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr15: 2188015 .. 2192966 (-)
RNA-Seq Expression	Carg02402
Synteny	Carg02402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGCAAACTTGATTATCTTTCAATTTCTTGTAAATGTTTTACTGGAGGGTAAGAAGGAATCAACAATGAGTTGTCTAGGTCAATAGAAAAGTATGGATGGCGTTGGAAGACGGACCCAACTGGATGATTGGAACTTGAATTGAATTTGTATTTTTCTGTTAGTTTGGTAAATTCCAGATAGCCGCTATAAATCTCGAATAAGTTGAAATTCTGAAAATAAATATGAAATCATATCCCGTTGACCAAGATATATGGAATATTGTGTAGTATTAACCCAGAATTAGAGAGAAGCCTAAACTCTAATAAGTGGAACACCTAATATGCTCACAAGGGTCAAAGGTATGATTGTGAAAACTGGTAAATGTACAAACGGCAAGAATTTTGTCACTTTCTAGCTGACTTCTAAAAAGACAAGGGGTAGTACTGTAGAATAATCCTGTCAATTATTTTCGAAAAAGATGTCTGAAAGTGTGAATTGCATTGTTTTTTCAAAAGTGGTTTTCTCTATTTTTATTGTTCTTTTATTTTTACAGAATTCTTTTGAAGAAAACCATTGGAGTTGTCTTTTTCGTCTATAATTATGAGCTTATGAACCATGCTTTTAAGTGCATAATAATCTCATACTTTCGCTTGAAAAATAGTTGAGAGTTACTATTAGATCCCACGTTGGTTGGGGAGGAGAACGAGACACCCTTTGCAAGAGTGTGGAAACCTCTCTCTAGTAGAAGCGTTTTAAAAACTTTGAGGGAAAGCCCGAAAGAAAAAACCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGGCTATTACAAATGGTATCAGAGCCGAAGGGGTAGACACGAGGCGGTGTGCCAGGAGGCGGTGTGCTAGCTAAGATGCTTGGCCCTAAATAGGAGTGGATTTTCTGGGTCCCTCATCAATTGTTGCTACTACTAAGGATCCAGGTTTTTTTTAGTCAGCTACAATTAGAATTATAATACTCGAAGTTAAGATTGTGCTAAAAACTTGAGGACAACTTAACACTATTCTGAAACAGCATCAAGTAACACTGCAAGAATTCGACTTTGACCGATGCTAAAAAGCATCGGCAAAAATACAAAAAACGTCGGGAAAAGGTTATCCCGACATGAAAAAACATCGTTGGTCTCTTCATTTGCGTCGGCAGTTATAACTCTCTTATGTTTTCTAACACAAATTTTGTAATTTTCAACAGGAAAAGAATAGGATGCGTAAGAAGAGAGGAGGGAGGAGGCCAGGAAGGACGAAAGACATATATAGTAATCTTTTGGTGGGATACCCTTGCCCAACAGAGGACAGACAGTCTTGCCTTGTAAGGGTACATGGACAAGAAATAACTAGGTAAGCAAATTTGGATTTCTTTCCTTCATTTTCAGGTCAAACAAAATAGAAAATTGCATGAACAAATTAATTGCTTTCAAATTGAAAATTGAAAAATTCAGTGTGGTAAAAGTAAAAGTAAAAGTAAAAGTAAAACCCATAGTTTATAAGGGTTTATGTGGCCGAGGCTCAAGAAACTTGAGTGCAGGTGGTGGAGATATCTACCTCTTATGATTTTAGTATTGATCTTTATTTGTGCTTTTGTAGTTAGGTTTCTTTTTCATCAAATACATATTCAATAGTGCAAAAGTATTCGAATATGCCCATTTCTAGCTAGCTGCCTCATTATTTTAGCTTAACTGATAATAATTCAGCTGGTTTAGGTCCTTTTTCTTAGTTGGGTTTGTCGATATATTTAGTGGTTTTTGTATTGTAAACTTGGTTATTAGGTAGGTTTTGTTTCATTTAAATAAACCATTATGTTGGTTTTGCATGGATTTTGGGCAAAAACCAACACGTTCCTCACCTAAAGAATAAAATATTGCAAGTACTTCCTTAGTCTTGAGTTATCCAAAATTATTTTATTATCTTCATACTGAACTAATTTCCTTTATTTAAAAGATAATGATTGGATTCTAAAATATGTGGTACATGTCGGGTGAGCCTATCTGCTCTATATTTAACGAGTTGAAGTTTTCGTGATCTTTTTTATTTGACAAAATGGCTTTAAAAGTTACAATATTATTGGACCTTTCGTAAACATTTCCTTCCAACCTATTCAGGAAGTTGAATATTATAACTTTTAATAGAATAGTGAGATTTTTTTTTAAACAAAGAGAAAAGTTCAATAATATCCTTTGCAATTTAGTGAAAGGAAATTATACCTACAAATGCATCACGCGGCTAAAGTTCTTATAAAGTGCTCGACTTTTAAGTTCGATAAGTCAATTAAACCAACCCACTATGTAACTAAAGCTATATTTCCATACATTGATAAAAGCTTTAGTGGGAGTTCATATCGTTTGTCTATGAGTTTTCTTAATAGCCCTACAAAGGAATCCCATCTAAATGGTTCACTAACCCACTTTTTGTTTGTTTTTTAAATAAAAAAAGTCCTTTTAACACTATTTTTTGGCTTGCTTTGTTTATGATAATATAGAAGAGTATTAAGTCGCCAATTATGACTTCAAACAATATTCCTTAGGTATGATAATGGATGGCCATACTTCTTAAAAGGAATCTACTTTTTAAGACTGGTTGTCATTGACATGAAATGCTTATCCTCAATGTCCTTGTAATCTCTTAATATATCAATTTAAGTTGAATAATAGAAGGCTCTTTTAGGAGGGCCCAAAAAGCGAAACTACTTGTAAACGCAACCGATGTCTTAATTATGATGGAAAATAGAAATTATGACAGGTTGATGCGTCGATTCAATGAAGATAAGTTAATTCGAGCATAATTTAGTACATAAGATATCATTTATCATCTCGAAAGTTGATTGTTTGATCTTCTACTTTGCAATTGTTGAAGAAAAATGTGAAATTCTATATCAGTTGGAGAGAAGAACGAAGTATTCTTTATAAGAGTGTGGAAACATCTCCCTAGTAGATGCGTTTTAAAAATTGTGAGGCTGACAACGATACGTAACGAGCAAAAGTGAATAATATCGGTTAGTGGTAGGCTTGGACTTTACAAATGGTATCAGAGTCAGACATCAAACGTGTGTCAGTGAAGACGTTAAGACCCCTAAAGAGATCGATTGTAAAATCTCACATCGGTTGGAAACAATATATTTCTTATAAAAATGTGAATACTCATAGAGCTGTTCACAGGGGTTACAAGGCCACCATTCAAATTTTTTATTCCTTCATTACAAAATTTTGATTAGTCTCATAAATAACAAGTGTAAGCATGAAAAAAACTCAGCAAATTGAACTAACTTTACCCCAAGATCGGTTATATTACGATACCTTTTGTTTAAACGGGCGTGTTCGAAGCCTCGCGCTTTGGTTCGATCGGTGACTGCAAATCTGGGTTGATTGGGAACAGATTGCATTGTCCATGTTGTGCCATCAGCTGGTCCACAAGAACTAGAGCTACCATAGCTTCAACCATTGGTACAGCTAAACAAAGGCAATTGTAATATAAGCCTGAATTCTCCATTTCTATCAGTATATTCATCAGATTACTGAATTTTAAGAACAAGAGAGGTAAAATCTTGCATCTTCAACACTTATCTACAAGAGATTACTATATCATATACATCAGCAGTCAATATGCCAATATTGTTACGAATGGCCACAAATGCAAAGGATGACGGATAGATTGTGAGATCCTACATCGATTGGAGAGAGGAATGAATGTCAGCGAGGACGCTGGGCCTTGAAAGAGGTGGATTGTGAGATCCTACATTGATTGGAGAGGGGAACGAAACATTCTTTTTAAGGGTGTGGAAACCTCTTCCTAGCCGACACGTTTTAAAAACCTTGAGGGAAAACCCAAAAAGGACAATATCTGCTAGCGATGGGCTTGGGCTGTTACAAATGATATCCGAGCCAAACACCGGGCGATGTGCCAATAAGGATGCTGAGCCCCAAAGGGGAGTAGACACTGGGCGGTGTGCTAGTGAGGACGTCAGCCTCGAAGGGGGTGGGGATTGTGAGATCTCACCTCAGTTGGAGAGGAGAACGGAGCATTCTATATAAGGGTGTGAAAACCTCTCCCTAGTAGACGCGTTTTAAAGACCTTGAGGGGAAGCCCGGAAAAAAAGCCTAAAGAAGATAATATCTGCTAGGGGTGGGCTTCGACTGTTACAAAGATATTTAGAAGTCATTGGAAGTACCTCTTGGGACGACACAAGGGTCATGACGACCACGAGTAATCAACTCGACCTCTTTCTTATCTCTGGTCACTGTACTCTGCTTTTTCTGCATAAAGAACATACAGGAAGATGTGAAAAAGGTAGACTGAAACAATGTGGATTCACTGTTGATTTTCACCAACAGGTGAAGAACGAGGCGTCCCATCCAAATATCGACGGGTCGGGTCAAGGAAATGAAAATTGGTACAAGTGCTATGGTGGTATTCTCAAATGTGCATGCAAGTTCATGAGAGAAAAGGCATGTTACCCCAATGGTAGCTGTTGGCTTGAAAGCTACCCTCATGGTTATGATTTCTCCATTAGATATACCTCCCTGAACATCAATACAGATCTTCAGTAATCACAACAAAAACACAAAAAGAAGAACAGGCACCATGTTCCATTGACCAAATCTTAATCACTTCATATGGGCATGACTAGACTACCTGTATTCCACCCGAGCGGTTCGTAACTGTTCTAATTCTTCCATTTTCATCTAAATAGAACGGATCGTTATGTTCGCTGCCAGTTAAAAATGTACCTGCACGGATTTTAGATTTAAAAATGTGAGTGTTGCAGCAACTGCAAAGTATGAATTCATTCTATATCATGCTCCAAAGAACCAGACTAAAATTCGACCTCCGAATCCACTGCCGATCTCGAAGCCCTTCGATGCAGGTAATGATAGAACAGCTTTAGCAAGCTCAGCTTCAAGTTTGTCAAACACAGGTGAACCAAGCCCCTGA

mRNA sequence

ATGAAAAGCAAACTTGATTATCTTTCAATTTCTTGTAAATGTTTTACTGGAGGAATTCTTTTGAAGAAAACCATTGGAGTTGAAAAGAATAGGATGCGTAAGAAGAGAGGAGGGAGGAGGCCAGGAAGGACGAAAGACATATATAGTAATCTTTTGGTGGGATACCCTTGCCCAACAGAGGACAGACAGTCTTGCCTTGTAAGGGTACATGGACAAGAAATAACTAGGTCAAACAAAATAGAAAATTGCATGAACAAATTAATTGCTTTCAAATTGAAAATTGAAAAATTCAGTGTGGTGAAGAACGAGGCGTCCCATCCAAATATCGACGGGTCGGGTCAAGGAAATGAAAATTGGTACAAGTGCTATGGTGGTATTCTCAAATGTGCATGCAAGTTCATGAGAGAAAAGGCATGTTACCCCAATGGTAGCTGTTGGCTTGAAAGCTACCCTCATGCAACTGCAAAGTATGAATTCATTCTATATCATGCTCCAAAGAACCAGACTAAAATTCGACCTCCGAATCCACTGCCGATCTCGAAGCCCTTCGATGCAGGTAATGATAGAACAGCTTTAGCAAGCTCAGCTTCAAGTTTGTCAAACACAGGTGAACCAAGCCCCTGA

Coding sequence (CDS)

ATGAAAAGCAAACTTGATTATCTTTCAATTTCTTGTAAATGTTTTACTGGAGGAATTCTTTTGAAGAAAACCATTGGAGTTGAAAAGAATAGGATGCGTAAGAAGAGAGGAGGGAGGAGGCCAGGAAGGACGAAAGACATATATAGTAATCTTTTGGTGGGATACCCTTGCCCAACAGAGGACAGACAGTCTTGCCTTGTAAGGGTACATGGACAAGAAATAACTAGGTCAAACAAAATAGAAAATTGCATGAACAAATTAATTGCTTTCAAATTGAAAATTGAAAAATTCAGTGTGGTGAAGAACGAGGCGTCCCATCCAAATATCGACGGGTCGGGTCAAGGAAATGAAAATTGGTACAAGTGCTATGGTGGTATTCTCAAATGTGCATGCAAGTTCATGAGAGAAAAGGCATGTTACCCCAATGGTAGCTGTTGGCTTGAAAGCTACCCTCATGCAACTGCAAAGTATGAATTCATTCTATATCATGCTCCAAAGAACCAGACTAAAATTCGACCTCCGAATCCACTGCCGATCTCGAAGCCCTTCGATGCAGGTAATGATAGAACAGCTTTAGCAAGCTCAGCTTCAAGTTTGTCAAACACAGGTGAACCAAGCCCCTGA

Protein sequence

MKSKLDYLSISCKCFTGGILLKKTIGVEKNRMRKKRGGRRPGRTKDIYSNLLVGYPCPTEDRQSCLVRVHGQEITRSNKIENCMNKLIAFKLKIEKFSVVKNEASHPNIDGSGQGNENWYKCYGGILKCACKFMREKACYPNGSCWLESYPHATAKYEFILYHAPKNQTKIRPPNPLPISKPFDAGNDRTALASSASSLSNTGEPSP

Homology

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BLAST of Carg02402 vs. NCBI nr
Match: KAG7016286.1 (hypothetical protein SDJN02_21392, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434.5 bits (1116), Expect = 5.2e-118
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MKSKLDYLSISCKCFTGGILLKKTIGVEKNRMRKKRGGRRPGRTKDIYSNLLVGYPCPTE 60
           MKSKLDYLSISCKCFTGGILLKKTIGVEKNRMRKKRGGRRPGRTKDIYSNLLVGYPCPTE
Sbjct: 1   MKSKLDYLSISCKCFTGGILLKKTIGVEKNRMRKKRGGRRPGRTKDIYSNLLVGYPCPTE 60

Query: 61  DRQSCLVRVHGQEITRSNKIENCMNKLIAFKLKIEKFSVVKNEASHPNIDGSGQGNENWY 120
           DRQSCLVRVHGQEITRSNKIENCMNKLIAFKLKIEKFSVVKNEASHPNIDGSGQGNENWY
Sbjct: 61  DRQSCLVRVHGQEITRSNKIENCMNKLIAFKLKIEKFSVVKNEASHPNIDGSGQGNENWY 120

Query: 121 KCYGGILKCACKFMREKACYPNGSCWLESYPHATAKYEFILYHAPKNQTKIRPPNPLPIS 180
           KCYGGILKCACKFMREKACYPNGSCWLESYPHATAKYEFILYHAPKNQTKIRPPNPLPIS
Sbjct: 121 KCYGGILKCACKFMREKACYPNGSCWLESYPHATAKYEFILYHAPKNQTKIRPPNPLPIS 180

Query: 181 KPFDAGNDRTALASSASSLSNTGEPSP 208
           KPFDAGNDRTALASSASSLSNTGEPSP
Sbjct: 181 KPFDAGNDRTALASSASSLSNTGEPSP 207

The following BLAST results are available for this feature:

BLAST of Carg02402 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016286.1	5.2e-118	100.00	hypothetical protein SDJN02_21392, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg02402 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02402 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02402 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02402-RA	Carg02402-RA	mRNA