Carg02388 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02388
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOB domain-containing protein 1-like
Location	Carg_Chr15: 2108674 .. 2109533 (-)
RNA-Seq Expression	Carg02388
Synteny	Carg02388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGTAAATGTCAAACCCAATTAAACCATTTGTGCAATATTTATCTTAATTTTAAGAATTATTAAGAAAAATGTTTTTATTTACGTGCACGATAAAATACATAAAATTAATCAAATTTTAGTAAGAAACACTTTAGAGATTATTAATTAATTAAGTTTAACAAAATTATTATTTTTGTTAAAATTAGTAAAGTTTTAGAGATATATCATTATTTTTAGTCGGTACAAAATTAAGGTAAATATTAATATGTCTGGTTAAATTTATAAGGGTAATTTTTTTTTTCTTACCGATTTGTATGGTTACGGGAGAAATGTAATATAATGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACAAGCAGTTTAGTATATGAAGCCAACGCTAGGATTCGAGACCCCGTCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCGTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAACATGCAAATTTGTTAGCTCTAATGTGCACGGAAACAAGTCAAGTTCGAGTTGAAGGTCAACAAGTCCCGGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACCCTATTCCACATAATTACAAATCTTCCAATATTTGTTGGGACTCCTCATGGACTTCATCATAG

mRNA sequence

ATGCAGTCTCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACAAGCAGTTTAGTATATGAAGCCAACGCTAGGATTCGAGACCCCGTCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCGTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAACATGCAAATTTGTTAGCTCTAATGTGCACGGAAACAAGTCAAGTTCGAGTTGAAGGTCAACAAGTCCCGGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACCCTATTCCACATAATTACAAATCTTCCAATATTTGTTGGGACTCCTCATGGACTTCATCATAG

Coding sequence (CDS)

ATGCAGTCTCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACAAGCAGTTTAGTATATGAAGCCAACGCTAGGATTCGAGACCCCGTCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCGTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAACATGCAAATTTGTTAGCTCTAATGTGCACGGAAACAAGTCAAGTTCGAGTTGAAGGTCAACAAGTCCCGGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACCCTATTCCACATAATTACAAATCTTCCAATATTTGTTGGGACTCCTCATGGACTTCATCATAG

Protein sequence

MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS

Homology

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BLAST of Carg02388 vs. NCBI nr
Match: KAG7016272.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363.6 bits (932), Expect = 9.6e-97
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKF 60
           MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKF
Sbjct: 1   MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKF 60

Query: 61  LQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQ 120
           LQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQ
Sbjct: 61  LQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQ 120

Query: 121 AQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
           AQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS
Sbjct: 121 AQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 178

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: KAG6578743.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359.4 bits (921), Expect = 1.8e-95
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKF 60
           MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKF
Sbjct: 1   MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKF 60

Query: 61  LQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQ 120
           LQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQ
Sbjct: 61  LQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQ 120

Query: 121 AQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
           AQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNI WDSSWTSS
Sbjct: 121 AQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNIFWDSSWTSS 178

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: XP_022939142.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 350.5 bits (898), Expect = 8.4e-93
Identity = 175/179 (97.77%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MQS-PPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIK 60
           MQS PPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIK
Sbjct: 1   MQSPPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIK 60

Query: 61  FLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKM 120
           FLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQ QLAVAKAEVHKM
Sbjct: 61  FLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQVQLAVAKAEVHKM 120

Query: 121 QAQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
            AQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNI WDSSWTSS
Sbjct: 121 LAQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNIFWDSSWTSS 179

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: XP_023551518.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 2.6e-86
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 11  MVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRA 70
           MVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRA
Sbjct: 1   MVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRA 60

Query: 71  DATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALM 130
           DATSSLVYEANARIRDP+YGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALM
Sbjct: 61  DATSSLVYEANARIRDPIYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALM 120

Query: 131 CTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
           CTETSQVRVEG++VPVL QDHFPF+DLNPIPH YKSSNI WDSSWTSS
Sbjct: 121 CTETSQVRVEGREVPVLCQDHFPFSDLNPIPHYYKSSNISWDSSWTSS 168

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: XP_022993359.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 9.3e-84
Identity = 157/168 (93.45%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 11  MVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRA 70
           MVVLSPCAACKILRRRCVD+CVLAPYFPPTEPLKFAAVHRIFGA NVIKFLQELP NQRA
Sbjct: 1   MVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRA 60

Query: 71  DATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALM 130
           DATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLA+AKAEVHKMQAQ+ANLLAL+
Sbjct: 61  DATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNANLLALI 120

Query: 131 CTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
           CTETSQV+VEG++VPVLRQDHFPFTDLN IPHNYKSSNI WDSSWTSS
Sbjct: 121 CTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWTSS 168

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BLAST of Carg02388 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.9e-48
Identity = 104/178 (58.43%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 3   SPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQ 62
           SPPP     VVLSPCAACKILRRRC ++CVLAPYFPPT+P KF   HR+FGA N+IKFLQ
Sbjct: 20  SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

Query: 63  ELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQ 122
           ELPE+QR DA +S+VYEA ARIRDPVYGC G+I+ LQ QVSELQAQLA A+ E+  MQ Q
Sbjct: 80  ELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

Query: 123 HANLLALMCTETSQVRVEGQQVPVLRQDHFPF--TDLNPI--PHNYKSSNICWDSSWT 177
            +NLL L+     Q + E        QD+  F   DL  +    N  SS + WD  WT
Sbjct: 140 RSNLLELIYNMDQQQKQE--------QDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Carg02388 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-46
Identity = 106/192 (55.21%), Postives = 124/192 (64.58%), Query Frame = 0


Query: 2   QSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFL 61
           Q PP PP   VVLSPCAACKILRRRC DKCVLAPYFPPT+P KF   HR+FGA N+IKFL
Sbjct: 44  QQPPQPP---VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 103

Query: 62  QELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQA 121
           QELPE+QR DA +S+VYEA AR+RDPVYGC G+I+ LQ QVSELQAQLA  + E+  MQ 
Sbjct: 104 QELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQL 163

Query: 122 QHANLLAL---MCTETSQVRVEGQQVPVLRQ-----DHF---PFTDLNPI------PHNY 177
           Q ++LL L   M      V+ +GQQ           D F   P  + N +       +N 
Sbjct: 164 QRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFISSPDEESNDLGFLEDNNNNN 223

[Close]

BLAST of Carg02388 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 6.2e-38
Identity = 74/109 (67.89%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 15  SPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATS 74
           SPCA+CK+LRRRC   C+ APYFPP +P KFA VH++FGA NV K LQELP +QRADA +
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 75  SLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQH 124
           SLV+EANAR+RDPVYGC G+I  LQNQVS+LQ QLAVA+AE+  +Q Q+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN 115

[Close]

BLAST of Carg02388 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.4e-36
Identity = 72/110 (65.45%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 15  SPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATS 74
           SPCAACK+LRRRC   CV +PYFP  EP KFA VHR+FGA NV K LQELP +QR DA S
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 75  SLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHA 125
           S+VYEANAR+RDPVYGC G+I  LQ Q+  LQAQLA+A+AEV  ++ + +
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Carg02388 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 8.3e-35
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 7   PPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPE 66
           PP  +  ++PCAACK+LRRRC  +C  +PYF P EP KFA+VH++FGA NV K L E+PE
Sbjct: 36  PPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPE 95

Query: 67  NQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANL 126
           +QRADA +SLVYEAN R+RDPVYGC G+I  LQ QV  LQA+L   ++E+ K + + A +
Sbjct: 96  SQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA-V 155

Query: 127 LALMCTETSQV 138
             L+    SQV
Sbjct: 156 ATLIVPSNSQV 165

[Close]

BLAST of Carg02388 vs. ExPASy TrEMBL
Match: A0A6J1FFZ7 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445138 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.1e-93
Identity = 175/179 (97.77%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MQS-PPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIK 60
           MQS PPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIK
Sbjct: 1   MQSPPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIK 60

Query: 61  FLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKM 120
           FLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQ QLAVAKAEVHKM
Sbjct: 61  FLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQVQLAVAKAEVHKM 120

Query: 121 QAQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
            AQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNI WDSSWTSS
Sbjct: 121 LAQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNIFWDSSWTSS 179

[Close]

BLAST of Carg02388 vs. ExPASy TrEMBL
Match: A0A6J1JZZ3 (LOB domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489400 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.5e-84
Identity = 157/168 (93.45%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 11  MVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRA 70
           MVVLSPCAACKILRRRCVD+CVLAPYFPPTEPLKFAAVHRIFGA NVIKFLQELP NQRA
Sbjct: 1   MVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRA 60

Query: 71  DATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALM 130
           DATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLA+AKAEVHKMQAQ+ANLLAL+
Sbjct: 61  DATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNANLLALI 120

Query: 131 CTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
           CTETSQV+VEG++VPVLRQDHFPFTDLN IPHNYKSSNI WDSSWTSS
Sbjct: 121 CTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWTSS 168

[Close]

BLAST of Carg02388 vs. ExPASy TrEMBL
Match: A0A0A0KU20 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G496470 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.4e-55
Identity = 117/158 (74.05%), Postives = 128/158 (81.01%), Query Frame = 0


Query: 7   PPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPE 66
           PPP  VVLSPCAACKILRRRCVDKC+LAPYFPPT+P KFAAVHRI+GAGNVIKFLQELPE
Sbjct: 6   PPPCTVVLSPCAACKILRRRCVDKCILAPYFPPTDPFKFAAVHRIYGAGNVIKFLQELPE 65

Query: 67  NQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKM-QAQHAN 126
            QRADA SSLVYEANARIRDP+YGCTGSIFQLQN+V EL AQLAVAKAEVHKM Q QH N
Sbjct: 66  GQRADAASSLVYEANARIRDPIYGCTGSIFQLQNKVRELHAQLAVAKAEVHKMQQLQHPN 125

Query: 127 LLALMCTETSQVRVEGQQVPVLRQDHFPFTDL-NPIPH 163
           LLAL     SQ + +       +  +FPF D  + +PH
Sbjct: 126 LLAL---PRSQFQEQQNYCIFTQLQNFPFPDFTSHLPH 160

[Close]

BLAST of Carg02388 vs. ExPASy TrEMBL
Match: A0A1U7ZCE4 (LOB domain-containing protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104588651 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.9e-54
Identity = 118/187 (63.10%), Postives = 138/187 (73.80%), Query Frame = 0


Query: 3   SPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQ 62
           S PPP P  VV+SPCAACKILRRRCV+KCVLAPYFPPTEPLKF   HR+FGA N+IKFLQ
Sbjct: 28  SSPPPLPPPVVISPCAACKILRRRCVEKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQ 87

Query: 63  ELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQ 122
           ELPE+QRADA SS+VYEANARIRDPVYGC G+I QLQ QV+ELQAQLA A+AE+  MQ Q
Sbjct: 88  ELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQCQ 147

Query: 123 HANLLALMCTETSQVRVEGQQVPVLRQ---DHFPFTDLNPIPHNYKSSN----------I 177
            ANLLAL+C E +Q     QQ P+L+Q   D+F  T     PH++++SN           
Sbjct: 148 QANLLALICMEMAQ----SQQAPLLQQQPFDNFMITS----PHSFQTSNGIFTDDTSLGS 206

[Close]

BLAST of Carg02388 vs. ExPASy TrEMBL
Match: A0A7J9KLE0 (LOB domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_015451 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.4e-53
Identity = 116/183 (63.39%), Postives = 132/183 (72.13%), Query Frame = 0


Query: 4   PPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQE 63
           PPPPPP  VV+SPCAACKILRRRC DKCVLAPYFPPTEP KF   HR+FGA N+IKFLQE
Sbjct: 26  PPPPPPTSVVISPCAACKILRRRCADKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQE 85

Query: 64  LPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQH 123
           LPE+QRADA SS+VYEA+ARIRDPVYGCTG+I QLQ QV+ELQAQLA A+AEV  MQ Q 
Sbjct: 86  LPESQRADAVSSMVYEASARIRDPVYGCTGAICQLQKQVNELQAQLAKAQAEVVNMQLQQ 145

Query: 124 ANLLALMCTETSQVRVEGQQVPVLRQDHFPFTD-LNPIPHNYKSS---------NICWDS 177
           ANL+AL+C E +Q     QQ P     H P  D L+  P +Y S+            W+ 
Sbjct: 146 ANLVALLCLEVAQ---SPQQNP-----HQPIDDFLSNSPQSYHSNPSFLDDNNLGSSWEP 200

[Close]

BLAST of Carg02388 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-49
Identity = 104/178 (58.43%), Postives = 122/178 (68.54%), Query Frame = 0


Query: 3   SPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQ 62
           SPPP     VVLSPCAACKILRRRC ++CVLAPYFPPT+P KF   HR+FGA N+IKFLQ
Sbjct: 20  SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

Query: 63  ELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQ 122
           ELPE+QR DA +S+VYEA ARIRDPVYGC G+I+ LQ QVSELQAQLA A+ E+  MQ Q
Sbjct: 80  ELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

Query: 123 HANLLALMCTETSQVRVEGQQVPVLRQDHFPF--TDLNPI--PHNYKSSNICWDSSWT 177
            +NLL L+     Q + E        QD+  F   DL  +    N  SS + WD  WT
Sbjct: 140 RSNLLELIYNMDQQQKQE--------QDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Carg02388 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-47
Identity = 106/192 (55.21%), Postives = 124/192 (64.58%), Query Frame = 0


Query: 2   QSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFL 61
           Q PP PP   VVLSPCAACKILRRRC DKCVLAPYFPPT+P KF   HR+FGA N+IKFL
Sbjct: 44  QQPPQPP---VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 103

Query: 62  QELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQA 121
           QELPE+QR DA +S+VYEA AR+RDPVYGC G+I+ LQ QVSELQAQLA  + E+  MQ 
Sbjct: 104 QELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQL 163

Query: 122 QHANLLAL---MCTETSQVRVEGQQVPVLRQ-----DHF---PFTDLNPI------PHNY 177
           Q ++LL L   M      V+ +GQQ           D F   P  + N +       +N 
Sbjct: 164 QRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFISSPDEESNDLGFLEDNNNNN 223

[Close]

BLAST of Carg02388 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 158.7 bits (400), Expect = 4.4e-39
Identity = 74/109 (67.89%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 15  SPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATS 74
           SPCA+CK+LRRRC   C+ APYFPP +P KFA VH++FGA NV K LQELP +QRADA +
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 75  SLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQH 124
           SLV+EANAR+RDPVYGC G+I  LQNQVS+LQ QLAVA+AE+  +Q Q+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN 115

[Close]

BLAST of Carg02388 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 152.5 bits (384), Expect = 3.1e-37
Identity = 72/110 (65.45%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 15  SPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATS 74
           SPCAACK+LRRRC   CV +PYFP  EP KFA VHR+FGA NV K LQELP +QR DA S
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 75  SLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHA 125
           S+VYEANAR+RDPVYGC G+I  LQ Q+  LQAQLA+A+AEV  ++ + +
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Carg02388 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 148.3 bits (373), Expect = 5.9e-36
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 7   PPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPE 66
           PP  +  ++PCAACK+LRRRC  +C  +PYF P EP KFA+VH++FGA NV K L E+PE
Sbjct: 36  PPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPE 95

Query: 67  NQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANL 126
           +QRADA +SLVYEAN R+RDPVYGC G+I  LQ QV  LQA+L   ++E+ K + + A +
Sbjct: 96  SQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA-V 155

Query: 127 LALMCTETSQV 138
             L+    SQV
Sbjct: 156 ATLIVPSNSQV 165

The following BLAST results are available for this feature:

BLAST of Carg02388 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016272.1	9.6e-97	100.00	LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6578743.1	1.8e-95	99.44	LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022939142.1	8.4e-93	97.77	LOB domain-containing protein 1-like [Cucurbita moschata]	[more]
XP_023551518.1	2.6e-86	95.83	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993359.1	9.3e-84	93.45	LOB domain-containing protein 1-like [Cucurbita maxima]	[more]

BLAST of Carg02388 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQR0	3.9e-48	58.43	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	2.8e-46	55.21	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q8LBW3	6.2e-38	67.89	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	4.4e-36	65.45	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8L5T5	8.3e-35	54.96	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of Carg02388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFZ7	4.1e-93	97.77	LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1JZZ3	4.5e-84	93.45	LOB domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489400...	[more]
A0A0A0KU20	4.4e-55	74.05	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G496470 PE=3 SV...	[more]
A0A1U7ZCE4	2.9e-54	63.10	LOB domain-containing protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104588651...	[more]
A0A7J9KLE0	5.4e-53	63.39	LOB domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_01545...	[more]

BLAST of Carg02388 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07900.1	2.7e-49	58.43	LOB domain-containing protein 1	[more]
AT2G28500.1	2.0e-47	55.21	LOB domain-containing protein 11	[more]
AT2G30130.1	4.4e-39	67.89	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	3.1e-37	65.45	LOB domain-containing protein 4	[more]
AT2G40470.1	5.9e-36	54.96	LOB domain-containing protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..122
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 9..142
None	No IPR available	PANTHER	PTHR31301:SF137	LOB DOMAIN-CONTAINING PROTEIN 1	coord: 9..142
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 16..113 e-value: 1.6E-41 score: 140.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 15..116 score: 26.237579

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02388-RA	Carg02388-RA	mRNA