Carg02378 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02378
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlorophyll A-B binding protein
Location	Carg_Chr15: 2059963 .. 2060514 (-)
RNA-Seq Expression	Carg02378
Synteny	Carg02378

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAATTCCATCTTCCTCACTGCAATTCCCAAACTCCCTCGCACTCGCTTCCAATTCCAAGCCTCACAAGCCGAAGTCTCTCACCTTCGTAACCAGAGCAGCAGATCCGGAATCTCCTGCCGCCGATTCGGAACCTAGATCGGACGGCGACGATTTCGAGGACCGACTGGCCCGACTCCAACTCCGACGCGGAACGGGAAAGAAGGCAGAGATTCGTAAGGCTCGGAAGTCCAGGAAAGGATCAACCACCGCCGCCGCCTCGTCAGTGTATCTCCCGCCAGTGCCGCTGAAGGAAGCGGTTTCCGGCGGACTTAAGGTAGAATTCGGATTCAGTCCGTACAGCGAGAGGATCAATGGATGGATTGCGATACTCGGATTATCGGCACTGGTTCTAGTGGAATTAGCCACTGGAAAAGGCGTCATCAATTACCACACGCCAGCGATTATACTAATTCAAGTATACTTCGTAGCGGCGGCGGCTGCTCTGTATATCAAATACGAGAAGGAGAAGGTTAGCGTTTGGCCGCAAGATGAAATCAAAAGTTAA

mRNA sequence

ATGGCGGCAATTCCATCTTCCTCACTGCAATTCCCAAACTCCCTCGCACTCGCTTCCAATTCCAAGCCTCACAAGCCGAAGTCTCTCACCTTCGTAACCAGAGCAGCAGATCCGGAATCTCCTGCCGCCGATTCGGAACCTAGATCGGACGGCGACGATTTCGAGGACCGACTGGCCCGACTCCAACTCCGACGCGGAACGGGAAAGAAGGCAGAGATTCGTAAGGCTCGGAAGTCCAGGAAAGGATCAACCACCGCCGCCGCCTCGTCAGTGTATCTCCCGCCAGTGCCGCTGAAGGAAGCGGTTTCCGGCGGACTTAAGGTAGAATTCGGATTCAGTCCGTACAGCGAGAGGATCAATGGATGGATTGCGATACTCGGATTATCGGCACTGGTTCTAGTGGAATTAGCCACTGGAAAAGGCGTCATCAATTACCACACGCCAGCGATTATACTAATTCAAGTATACTTCGTAGCGGCGGCGGCTGCTCTGTATATCAAATACGAGAAGGAGAAGGTTAGCGTTTGGCCGCAAGATGAAATCAAAAGTTAA

Coding sequence (CDS)

ATGGCGGCAATTCCATCTTCCTCACTGCAATTCCCAAACTCCCTCGCACTCGCTTCCAATTCCAAGCCTCACAAGCCGAAGTCTCTCACCTTCGTAACCAGAGCAGCAGATCCGGAATCTCCTGCCGCCGATTCGGAACCTAGATCGGACGGCGACGATTTCGAGGACCGACTGGCCCGACTCCAACTCCGACGCGGAACGGGAAAGAAGGCAGAGATTCGTAAGGCTCGGAAGTCCAGGAAAGGATCAACCACCGCCGCCGCCTCGTCAGTGTATCTCCCGCCAGTGCCGCTGAAGGAAGCGGTTTCCGGCGGACTTAAGGTAGAATTCGGATTCAGTCCGTACAGCGAGAGGATCAATGGATGGATTGCGATACTCGGATTATCGGCACTGGTTCTAGTGGAATTAGCCACTGGAAAAGGCGTCATCAATTACCACACGCCAGCGATTATACTAATTCAAGTATACTTCGTAGCGGCGGCGGCTGCTCTGTATATCAAATACGAGAAGGAGAAGGTTAGCGTTTGGCCGCAAGATGAAATCAAAAGTTAA

Protein sequence

MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLARLQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERINGWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDEIKS

Homology

[Close]

BLAST of Carg02378 vs. NCBI nr
Match: KAG6578732.1 (hypothetical protein SDJN03_23180, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016262.1 hypothetical protein SDJN02_21368, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.0 bits (881), Expect = 8.1e-91
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 184
           IKS
Sbjct: 181 IKS 183

[Close]

BLAST of Carg02378 vs. NCBI nr
Match: XP_022938525.1 (uncharacterized protein LOC111444734 [Cucurbita moschata])

HSP 1 Score: 341.7 bits (875), Expect = 4.0e-90
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALA NSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALAFNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 184
           IKS
Sbjct: 181 IKS 183

[Close]

BLAST of Carg02378 vs. NCBI nr
Match: XP_023550096.1 (uncharacterized protein LOC111808391 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336.3 bits (861), Expect = 1.7e-88
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLA ASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLAFASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGS TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGS-TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 184
           IKS
Sbjct: 181 IKS 182

[Close]

BLAST of Carg02378 vs. NCBI nr
Match: XP_022992796.1 (uncharacterized protein LOC111489022 [Cucurbita maxima])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALASNSKPHKPK+LTFV RAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGS TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGS-TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGL ALVLVELATGKGVINYHTPAIILIQ YFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 184
           IKS
Sbjct: 181 IKS 182

[Close]

BLAST of Carg02378 vs. NCBI nr
Match: XP_004149820.1 (uncharacterized protein LOC101221723 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 4.8e-75
Identity = 162/186 (87.10%), Postives = 170/186 (91.40%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSE-PRSDGDDFEDRLA 60
           MAAIPSSSLQFPNSL L SNSKP KPK LTF+TRAADPESPA DSE P SDGDDFEDRLA
Sbjct: 1   MAAIPSSSLQFPNSLTLPSNSKPPKPKLLTFLTRAADPESPAGDSEQPGSDGDDFEDRLA 60

Query: 61  --RLQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSE 120
             R++ R GTGKKAEIRKARKS++GSTT AASSVYLPPV LKEAVSGGLKVEFGFSPYSE
Sbjct: 61  KVRIRYRSGTGKKAEIRKARKSKQGSTT-AASSVYLPPVSLKEAVSGGLKVEFGFSPYSE 120

Query: 121 RINGWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWP 180
           RINGWIAILG+SALVLVELATGK VI+YHTPAIILIQVYFVAA AA+YIKYEKEKVSVWP
Sbjct: 121 RINGWIAILGISALVLVELATGKSVISYHTPAIILIQVYFVAAVAAVYIKYEKEKVSVWP 180

Query: 181 QDEIKS 184
            DEIKS
Sbjct: 181 SDEIKS 185

[Close]

BLAST of Carg02378 vs. ExPASy TrEMBL
Match: A0A6J1FK14 (uncharacterized protein LOC111444734 OS=Cucurbita moschata OX=3662 GN=LOC111444734 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.9e-90
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALA NSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALAFNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 184
           IKS
Sbjct: 181 IKS 183

[Close]

BLAST of Carg02378 vs. ExPASy TrEMBL
Match: A0A6J1JUJ1 (uncharacterized protein LOC111489022 OS=Cucurbita maxima OX=3661 GN=LOC111489022 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.9e-87
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALASNSKPHKPK+LTFV RAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGS TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGS-TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGL ALVLVELATGKGVINYHTPAIILIQ YFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 184
           IKS
Sbjct: 181 IKS 182

[Close]

BLAST of Carg02378 vs. ExPASy TrEMBL
Match: A0A0A0KS45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505130 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.3e-75
Identity = 162/186 (87.10%), Postives = 170/186 (91.40%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSE-PRSDGDDFEDRLA 60
           MAAIPSSSLQFPNSL L SNSKP KPK LTF+TRAADPESPA DSE P SDGDDFEDRLA
Sbjct: 1   MAAIPSSSLQFPNSLTLPSNSKPPKPKLLTFLTRAADPESPAGDSEQPGSDGDDFEDRLA 60

Query: 61  --RLQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSE 120
             R++ R GTGKKAEIRKARKS++GSTT AASSVYLPPV LKEAVSGGLKVEFGFSPYSE
Sbjct: 61  KVRIRYRSGTGKKAEIRKARKSKQGSTT-AASSVYLPPVSLKEAVSGGLKVEFGFSPYSE 120

Query: 121 RINGWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWP 180
           RINGWIAILG+SALVLVELATGK VI+YHTPAIILIQVYFVAA AA+YIKYEKEKVSVWP
Sbjct: 121 RINGWIAILGISALVLVELATGKSVISYHTPAIILIQVYFVAAVAAVYIKYEKEKVSVWP 180

Query: 181 QDEIKS 184
            DEIKS
Sbjct: 181 SDEIKS 185

[Close]

BLAST of Carg02378 vs. ExPASy TrEMBL
Match: A0A6J1BZH5 (uncharacterized protein LOC111006119 OS=Momordica charantia OX=3673 GN=LOC111006119 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.0e-75
Identity = 157/186 (84.41%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLA- 60
           MAAIPSSSLQFPNSL   SNSKPHK K LTFVTRAADPE+PAAD EP SDGDDFE+RLA 
Sbjct: 1   MAAIPSSSLQFPNSLPFPSNSKPHKTKPLTFVTRAADPETPAADPEPGSDGDDFENRLAK 60

Query: 61  -RLQLRRGTGKKAEIRKARKSRKGSTT-AAASSVYLPPVPLKEAVSGGLKVEFGFSPYSE 120
            RL+ R GTGKKAEIRKARKS KGST  A  SSVYLPPVPLKEAVSGGLKVEFGFSP+SE
Sbjct: 61  VRLKYRSGTGKKAEIRKARKSNKGSTAGAGGSSVYLPPVPLKEAVSGGLKVEFGFSPFSE 120

Query: 121 RINGWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWP 180
           RINGWIAILG+SALVLVELATGKGVINYHTPAIILIQVYFVAA AA+Y+K+EKEKVSVWP
Sbjct: 121 RINGWIAILGISALVLVELATGKGVINYHTPAIILIQVYFVAAVAAVYVKFEKEKVSVWP 180

Query: 181 QDEIKS 184
            +E+K+
Sbjct: 181 PEEVKN 186

[Close]

BLAST of Carg02378 vs. ExPASy TrEMBL
Match: A0A5D3C1D6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002400 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 160/186 (86.02%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSE-PRSDGDDFEDRLA 60
           MAAIPSSSLQFPNSL L SNSK HKP+ LTF+TRAADPES  +DSE P SDGDDFEDRLA
Sbjct: 1   MAAIPSSSLQFPNSLTLPSNSKSHKPRLLTFLTRAADPESTPSDSEQPGSDGDDFEDRLA 60

Query: 61  --RLQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSE 120
             R + R GTGKKAEIRKARKS+KGSTT AASSVYLPPVPLKE VSGGLKVEFGFSPYSE
Sbjct: 61  KVRFRYRSGTGKKAEIRKARKSKKGSTT-AASSVYLPPVPLKEPVSGGLKVEFGFSPYSE 120

Query: 121 RINGWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWP 180
           RINGWIAILG+SALVLVELATGK VI+YHTPAIILIQVYFVAA AA+YIKYEKEKVSVWP
Sbjct: 121 RINGWIAILGISALVLVELATGKSVISYHTPAIILIQVYFVAAVAAVYIKYEKEKVSVWP 180

Query: 181 QDEIKS 184
           +DEIKS
Sbjct: 181 RDEIKS 185

[Close]

BLAST of Carg02378 vs. TAIR 10
Match: AT3G12345.1 (unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 171.0 bits (432), Expect = 8.8e-43
Identity = 91/149 (61.07%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 33  TRAADPESPAADSEPRSDGDDFEDRLA--RLQLRRGTGKKAEIRKARKSRKGSTTAAASS 92
           T    P+     SE  +D D FE RL+  RL+ R GTGKKAE+RK++K   GS  +  + 
Sbjct: 39  TEDTQPDPETTQSESGTDPDQFESRLSNIRLRYRSGTGKKAEVRKSKKGSSGS-PSKGTG 98

Query: 93  VYLPPVPLKEAVSGGLKVEFGFSPYSERINGWIAILGLSALVLVELATGKGVINYHTPAI 152
           +YLPPV LKEAVSGGLKVE GFSP+SERING IA LGL+AL+LVELATGK V+NYHTP++
Sbjct: 99  IYLPPVSLKEAVSGGLKVEPGFSPFSERINGRIAGLGLTALLLVELATGKSVLNYHTPSV 158

Query: 153 ILIQVYFVAAAAALYIKYEKEKVSVWPQD 180
           + +Q+YFVAA +A+++K EKEKVSVWP+D
Sbjct: 159 VFLQIYFVAAVSAMFVKIEKEKVSVWPKD 186

The following BLAST results are available for this feature:

BLAST of Carg02378 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578732.1	8.1e-91	100.00	hypothetical protein SDJN03_23180, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938525.1	4.0e-90	99.45	uncharacterized protein LOC111444734 [Cucurbita moschata]	[more]
XP_023550096.1	1.7e-88	98.91	uncharacterized protein LOC111808391 [Cucurbita pepo subsp. pepo]	[more]
XP_022992796.1	1.2e-86	97.27	uncharacterized protein LOC111489022 [Cucurbita maxima]	[more]
XP_004149820.1	4.8e-75	87.10	uncharacterized protein LOC101221723 [Cucumis sativus]	[more]

BLAST of Carg02378 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02378 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FK14	1.9e-90	99.45	uncharacterized protein LOC111444734 OS=Cucurbita moschata OX=3662 GN=LOC1114447...	[more]
A0A6J1JUJ1	5.9e-87	97.27	uncharacterized protein LOC111489022 OS=Cucurbita maxima OX=3661 GN=LOC111489022...	[more]
A0A0A0KS45	2.3e-75	87.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505130 PE=4 SV=1	[more]
A0A6J1BZH5	3.0e-75	84.41	uncharacterized protein LOC111006119 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3C1D6	1.5e-74	86.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg02378 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12345.1	8.8e-43	61.07	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR14154:SF15	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 22..180
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 22..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02378-RA	Carg02378-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane