Carg02362 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02362
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr15: 1989991 .. 1993088 (-)
RNA-Seq Expression	Carg02362
Synteny	Carg02362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTCTGCAGAACACTGCAATCAACCAAAAAATGCGATCAAAAGAGAAGAAGATGCTGCCAATTTCCGAGTCTGAGGTGTGTCAATCGCTCTCTGTATTTTCGTTCGATCCCGTCGCTCAATTTGACATTTCTCTGTAGATTTTTCACGGAAGACAGTTGCTGTTCGGTCTCTATCTATGTTTTTTTTTTTTTTTTCACTCTGAATCAGTATACATTTTCATGTTCAAGAGCCCATTCATTTTAATATTGCAACTATGCGAAAACGGAGCTTGATTTTGGACTACAAACGATACGAAAAGGAATCACCCGGCTTTATGGAAAGATACAAAGATTAGAAGCCAAATCCATTTGACATTTTAAAAATTTTCCATGTAGTCAACTCCATTTTTATAAATATTGTTTGACTAATTTTTCAGCTTCAGAATCCGACACATGGAATCTTGCTCCCTTTGAAGAGAAGACAACCAGAAGCTTGTTGTCTTTTGATGGACAGAAAAATGTTAGTACTCTGTAATGCTTGATAGACAAAACTTTTTGTTGATGATTGGCTTACACTTGAAAATGTGAGCTCATATAATCTGCATAGTTAGAATTGGGTAATCTGTATTTAGATTGTAGATTTATGATTATGAACGTCTTCTAAGAGTTAAGTTTATATTCATATAGCCTAAGATTTTGGTTTGGCTTCTAAATTTGGGTTTCATAAGTTTAATCTGTGAACTAAACACCCTTTTATGGATAGGTATTACCAGCTAGATTATCTAGAATTAGAAGATTATAGAGTCGGTGTTAAGGAGAACTAATGGGTTGGTTCTACTTGTTAATATGTATTAGAACAATGACGTATACTACAATCCTAAATAGCTGATCTCAAATAGAAAACACCCTTCCATAATAGAATTGATTTCCATATGAAGATTTTTTTTTCTTATAATTTGTCTGTATATGTGCAGCTATTATTGTTCTTCCATATGTCATGCTCTAAAGCTGTTTTGGTTAGTGGTGAATGTATAGAAATATTCAACAATATGGTGATGAATGAACTAGTAACCTGAGAATACAATGATGCTGATAGGTTTCATACTCATTGATTATTCAGAGTGATTATACTGTGATCTTCATGAAATGTAGGGACTAAAATCTTGCTTCCTTATCATTTACTGATAATCATGTGATTTTGGATCTCTACTTTCTGTCATACTAGGTTTGAATTCTTGTGAATTTAAGTTTGTATATTTGATTGTGATAATTAGAAAATTTAGGCCACTGTTAAAGAATTAGGCTTAGTGGGCATCCCATTAATTAGCGTCTTTTCTTCTGCTCGTATTTATTTCTAGATGTTTTGTAGTTTCCTGACAAAGTTTAAAGGGACTAGAAGATGGTTGTGAGGTCCCACATCGGTTGGAGAGGGGAACAAAATATTTTAAAACCGTAGACACATTTTAAAACCTCTCCCTACTTGACACGTTTTAAAACTGTGAAGCTGACAGCGATACGTAAACAAAACGGACAATACCTGTCAGCGATGGGCGTAGGCTATTACAATGGCTGAATTGGAATGATTTAAAATGGATCCATGGTGTAAACACATCTAAATAATCTCCATTTCTTAGTTCAGGTTAGGAATATGATCTTATTATTATTGTTTTAGGTCCTCTATGATTACTTATTTTATTGTTAAAGTTGAAATTAGATAGTATGCACTCTATAATGGTATATAATGCATAAACTTTGTCATAATTATTTGGACTAATGTACAATTTTATATAGTTTTGTACGCTATAATTTATACTAACCTATGAAAGGAGATCCAAATTTTATATAGTTTTATATCTATATTTGACTAGCTATACTATCCACCTATCCTGCAATTATCTGTATGAATCAAACCAAGTCAAATTTGGTGAAAGCGAAACCAAACAGATAGCTACAAAATTTGCCAAAATTTAGATGTAAAGCCGACCCTCTTCTCACTCTGCAAGGTTCTTAGTCAGTTGGTCGTTTTATATGCCTTTCATACATTGAATATGCTTGTGATATTAGAACTCTCTATGAAAGGGAAATTTTCATCCTCACACTCAACAGATCTTGTTCTTATTTTCTATAACAATCACAGTTATAATAGACAATAAAATCTCATTGTTTGCAGCTTATTGATTCTGTTTTAAAAATATATATTACCAACAGTTACAGATTCATCACTCCATTATGTACAGTAAAATATTGTTTACTCTGACCATGAGTTGATTTTAGTATGCTTGTATTATTAAATCATCAATTTGAATCTCTTTTCATATAAAAAAAAATGGTTATCAAACCAAGTTAATTTAACGTGCATTTTCTTTTCTGAGTAAATAACTTGCTATCCAGCAAAAGGGCGAGTTACCAAAGTGCCCCAAACTCTCACTCTCTTAATATATATGCATTTTGTGCTTATGGGCTCCTTCAGGTTATATTGTTGCCTTTGTTGATTCATGCCTATAGAACCACCTGTCGAGTTGGTAACGCAAGAAAGCGAGCTCGTGCTTGGTGCTGCTGAGAGGTGAGAATCAGGGAATGAAATTTCTTTGTTCACTACAATTCATTTTTATTTCAGTTTTCGAGAAAATTTTGGAGATTATGGATTCTGAAAGAAAAATAATTTAAACTAATAGAACTATTATGGTTGAAGAGTGAATTCATTCTATTGATCCTGTTCTTCTTCCCTTCCTTCTATTAGGAGTACTATTTGGAATACGTAGGGAAATACAGCTTTTGATATTTGATTTGTAGATCTGGCCATTGACTCTGAAATTCAGAGAGGTTCTCTGTAAGCTTGTTGTTCCATTCCAAGAACAAGGAGGTTGAAAAATATTGGTGGGAAGTGGTGGAAGCGTTCTTGATCAGTTTCTTACATTGAGAAATTATACTCTTTCATCGAATAGTTTACGATATGTTTATTGTATATATATACTTAACATGATGGCTTAAATGACAAGACGTTTTCATAATAAATTTGTTGCATGGTAACTTCTCACTTATAAATTTCTTTGTAGCAGGACACAGTGAGATTTTACTGGTTAACATGGATGTTCCATCGCAGGTGGTTAATA

mRNA sequence

ATGAATTTTCTGCAGAACACTGCAATCAACCAAAAAATGCGATCAAAAGAGAAGAAGATGCTGCCAATTTCCGAGTCTGAGCTTCAGAATCCGACACATGGAATCTTGCTCCCTTTGAAGAGAAGACAACCAGAAGCTTGTTGTCTTTTGATGGACAGAAAAATGTTATATTGTTGCCTTTGTTGATTCATGCCTATAGAACCACCTGTCGAGTTGGTAACGCAAGAAAGCGAGCTCGTGCTTGGTGCTGCTGAGAGGACACAGTGAGATTTTACTGGTTAACATGGATGTTCCATCGCAGGTGGTTAATA

Coding sequence (CDS)

ATGAATTTTCTGCAGAACACTGCAATCAACCAAAAAATGCGATCAAAAGAGAAGAAGATGCTGCCAATTTCCGAGTCTGAGCTTCAGAATCCGACACATGGAATCTTGCTCCCTTTGAAGAGAAGACAACCAGAAGCTTGTTGTCTTTTGATGGACAGAAAAATGTTATATTGTTGCCTTTGTTGA

Protein sequence

MNFLQNTAINQKMRSKEKKMLPISESELQNPTHGILLPLKRRQPEACCLLMDRKMLYCCLC

Homology

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BLAST of Carg02362 vs. NCBI nr
Match: KAG7016247.1 (hypothetical protein SDJN02_21353, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MNFLQNTAINQKMRSKEKKMLPISESELQNPTHGILLPLKRRQPEACCLLMDRKMLYCCL 60
          MNFLQNTAINQKMRSKEKKMLPISESELQNPTHGILLPLKRRQPEACCLLMDRKMLYCCL
Sbjct: 1  MNFLQNTAINQKMRSKEKKMLPISESELQNPTHGILLPLKRRQPEACCLLMDRKMLYCCL 60

Query: 61 C 62
          C
Sbjct: 61 C 61

The following BLAST results are available for this feature:

BLAST of Carg02362 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016247.1	1.5e-25	100.00	hypothetical protein SDJN02_21353, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg02362 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02362 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02362 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02362-RA	Carg02362-RA	mRNA