Carg02326 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02326
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Golgin candidate 6
Location	Carg_Chr15: 1839715 .. 1842977 (+)
RNA-Seq Expression	Carg02326
Synteny	Carg02326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCGCTAGTGTTTTATCTGGAGGCCCAAAGTCTCAATCACAGGGCTGAGTTATTGGGCCTTGGGCTTGTCTTCCCCCGCAGAATATATATTAAAAAATAAAAGGAAAAAGACAAACCAAAAGTAGGAGGTCCGAATTTCCGTTTTGGGCAAGTGCTGAAAGAAAGCACGATACACTCCATCGCTGTCAACCGAAGATCGTCGGACGCATAGATTAGCCACTCTGTTTCGAACTTCAGGTTCGTTCCTGTTATTTTCTTTTTTCTAATCGGAATTCTATTTCATTTCGGACGGCCATTTATGTATTCAATTCTGTGTAACACTGCGTTTGGGGATGAAATTTCATTTATAGGATTTTTTTAACGATTTGATTGGAGCTCTCACTATTAGAGATTGCGTGTAAACATTTCCAACGCTTGGATTGTGTTCAGGGTGATTGCGTTGGCTTCTGTTTATGGATTTTTTATATTCTTACTCGATTATGGATTTGGTCTCTGGTTACAAGTTGATCTTACTCTCTTCTCTGCATCCGAAGTTTCATGGATTATGATGTTTAGGACAGTAATGTGGTGCTTGTTTGTAGTTGTTTATACGATCTTTAGTATTGTGTTTTATCTGTGAGCTTTGTGCAGGGCGTGGTTGGGCTTGTTTTCGGCAATGAGAATTCTACGTCCAATGAAGATAGGTAAGTAGATGTTGTATACTCGTAAACACGAAGATGGATAAACCGCATGGCATACGCTTGTTCATCTGCTTTTTCTCATTCAGAAATTTTTTAACATTTACGTTTACTGAATCTTTTTTTATATTTTTTGGTTAATTGTGAACCGTTTCCATAACGTTGAACGTGTATTGGATCGCATTAGCAATGGTCTGTTAGTTGAACACGATAATGTACATGGTCCAGTTTGTAAGCTCTCCATTGTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTAGTCCTCACTTATTAACCCATGATCTTCCACTAAATTAACCATGGTGGGATACTCCCAATCCCAATAATCCTCAACATGGTCAGCTTGCAGAGGACAGGAGAGCTGCTATGGTGGAGCTTCAGTCTGTTGTAGCAGAAAACCGTTCTGCCCAAGCTTTTGGTGCAATGGGTATGTGCTTTACTTGTTATCTAACTATAGTTGTCTGGATTGTCTTAAATTTATAAATAAAGAATATACTTGACATGTTTTTGCAGGATTTCCTGTGCTTATGAGTGTTTTAAAGGAGGAACGAGATGATGTTGAAATGGTTGCAGTTTATCTGTTCTTTGCTTCCCTTTTTATTGAGGAATTAAATCTTGCTTTAGGACTTCTAGATGTGCTTTCATTCTGAACAAAGTACATGTTATTGCCATTTCAAGAAGTATTGGAACAATTAAAGATAATATTACATGGTAAGTCTAGGTTATTTGATATTTCTATGCGGCGAAATCTTTACTTGATAGTATTATACATTATTAGTTTACTTAATTACTTCTGTTCTAGTTCAATTTGACCATCTGTGGGAAGTCATTCTTTGCTGTTCTTCTTTACTGAGCTTCTTTTTTGTATTTATTCTCCATTACTTGACTTCAGGTTCTAGGGGCCCTTGAATCTCTTGTAAGTGCATTGACTCCTCTCGATCATGCAAATGGGTCCAGGGATGAAGTTCAAATCTGACGAACTCTGATTTGGTTTCAAGGGAATCAGACAGCATCTCTCTTCTTTTAAGTCTTTTGGTCAGTAATTCCTCACATTTACTTACATTTACTTACATTTTCAATATCTATAGGTTTGGGTATGCATTTGTGCAACTCAGTATCATATCTGATCACTTTTCTCCTCCCTTCTTTGGGTTTCTTTCTGTACTTTTGCAGTCAGACGAGGATTTTTATGTTAGATATTATGCTCTTCAACTGTTGACAGCCCTTCTTACAAATTCTCCCACGAGGTATATTTATTTACTCAGTTTATTTTATTTTGCGACTTTTTCTGTACTTCTTACTATTCTTATTAGTTGAATTGCTCATTTTCCTCTTACGATTGCAGGAAGCAATTCTCAGCATTCCTCACGGTATAACTCGACTTATGGACATCCCTATGGACTGCGAGGTATACTTTGGCTTACTAATGTAGATAAGAACAGAAAAGTTATAACACGGGAGTCACTGATCTCTGAGCATTGGCAATCTGATCTCTGAGAATCCCAAAAATATTGATGCTATTGCATGCAAACTCCTTGGAGACAATGTGCAAGAGCCTGCCCTGAATTCAATTCTAAGGATCACTTTGCGGACATCAAGTACCCAAGAATACTTTGCAGTTGATTATGTTTTCAAGTGCTTTTGTGAGGTTATTTATGCTTCAACTTCCTACATTTTTCTTTATAAAACATATTAATATTTAAATTTCAAATTTCAATTGTGTTATTACTCTTTTTAACACATTTTCTGAATCAGAAAAATTCTGATGGGCAAACAATGTTGGCATCCACTTTAATTCCTCAACCACAGTCCATGATCCATGCACCACTTGAAGAGGATGTGAACATGTCATTCGGAAGGTTTATTCACAAATCCATCGTGCATTGTTCTTTTGGTGCTTTATTAAATGCACTTTTTCTCTGTCTACTAATGTAGAAGATTAGTTTAAACTCCATAAACTTCTAGTTTAATTATCTTAGTTGACAAATTCTTCATCTTGCAGCATGCTCTTACGTAGTCTTACTTTGAGCGAAAACAATGGGGATCTAGAGGTAATGTATATCTTAATATCAAGGGAACGTTGAAATATATGATATGGTACGAGTGCTGCATCACAAAGTATCAGTAGTTCTTGGATGTCCCCGAAGGTTTATTCACAAGTATCCTGAGTTCAATAATGACAACAAGAGCTGCCAGTGTTCTTACTCGTGTGATTAAGAACAACAATCAGTGCAACTATGCCATCCTTTGGAGATCCTGAACCTCTGATGCATCGAATGGTGAAGTATTTGGCTGTTGCCTCTTCTATGAAAAACAGAAACGGGAAGCTCCGACAAGGTCTACGGCTGCTAGTATGGCTGAATTAAGGCAGAAGCAAGGGAAGAAGCTCTGAAGGAGAGTGAGACTGAAGTGAATGACTTGCATGTGTGCCTCGTGCAAGAACAAAGCAAGGCTATTAGAGTTCGGAGAGGATGTTGATAAACTTCTTGAAGGAATCGGAGATGACCTCGGGCTGCCTAACGACGACGAAGACGACGGAGATGAAACCTGA

mRNA sequence

ATGGGCCGCTACCACTCTGTTTCGAACTTCAGGGCGTGGTTGGGCTTGTTTTCGGCAATGAGAATTCTACGTCCAATGAAGATAGGATTTCCTGTGCTTATGAGTGTTTTAAAGGAGGAACGAGATGATGTTGAAATGGTTGCAGTTTATCTGTTCTTTGCTTCCCTTTTTATTGAGGAATTAAATCTTGCTTTAGGACTTCTAGATGTTCTAGGGGCCCTTGAATCTCTTGTAAGTGCATTGACTCCTCTCGATCATGCAAATGGGTCCAGGGATGAAGAAGCAATTCTCAGCATTCCTCACGGTATAACTCGACTTATGGACATCCCTATGGACTGCGAGAATCCCAAAAATATTGATGCTATTGCATGCAAACTCCTTGGAGACAATGTGCAAGAGCCTGCCCTGAATTCAATTCTAAGGATCACTTTGCGGACATCAAGTACCCAAGAATACTTTGCAGTTGATTATGTTTTCAAGTGCTTTTGTGAGAAAAATTCTGATGGGCAAACAATGTTGGCATCCACTTTAATTCCTCAACCACAGTCCATGATCCATGCACCACTTGAAGAGGATGTGAACATGTCATTCGGAAGCATGCTCTTACGTAGTCTTACTTTGAGCGAAAACAATGGGGATCTAGAGGTAATAACAACAATCAGTGCAACTATGCCATCCTTTGGAGATCCTGAACCTCTGATGCATCGAATGGTGAAGTATTTGGCTGTTGCCTCTTCTATGAAAAACAGAAACGGGAAGCTCCGACAAGGTCTACGGCTGCTAGCAGAAGCAAGGGAAGAAGCTCTGAAGGAGAGTGAGACTGAAGTGAATGACTTGCATAACAAAGCAAGGCTATTAGAGTTCGGAGAGGATGTTGATAAACTTCTTGAAGGAATCGGAGATGACCTCGGGCTGCCTAACGACGACGAAGACGACGGAGATGAAACCTGA

Coding sequence (CDS)

ATGGGCCGCTACCACTCTGTTTCGAACTTCAGGGCGTGGTTGGGCTTGTTTTCGGCAATGAGAATTCTACGTCCAATGAAGATAGGATTTCCTGTGCTTATGAGTGTTTTAAAGGAGGAACGAGATGATGTTGAAATGGTTGCAGTTTATCTGTTCTTTGCTTCCCTTTTTATTGAGGAATTAAATCTTGCTTTAGGACTTCTAGATGTTCTAGGGGCCCTTGAATCTCTTGTAAGTGCATTGACTCCTCTCGATCATGCAAATGGGTCCAGGGATGAAGAAGCAATTCTCAGCATTCCTCACGGTATAACTCGACTTATGGACATCCCTATGGACTGCGAGAATCCCAAAAATATTGATGCTATTGCATGCAAACTCCTTGGAGACAATGTGCAAGAGCCTGCCCTGAATTCAATTCTAAGGATCACTTTGCGGACATCAAGTACCCAAGAATACTTTGCAGTTGATTATGTTTTCAAGTGCTTTTGTGAGAAAAATTCTGATGGGCAAACAATGTTGGCATCCACTTTAATTCCTCAACCACAGTCCATGATCCATGCACCACTTGAAGAGGATGTGAACATGTCATTCGGAAGCATGCTCTTACGTAGTCTTACTTTGAGCGAAAACAATGGGGATCTAGAGGTAATAACAACAATCAGTGCAACTATGCCATCCTTTGGAGATCCTGAACCTCTGATGCATCGAATGGTGAAGTATTTGGCTGTTGCCTCTTCTATGAAAAACAGAAACGGGAAGCTCCGACAAGGTCTACGGCTGCTAGCAGAAGCAAGGGAAGAAGCTCTGAAGGAGAGTGAGACTGAAGTGAATGACTTGCATAACAAAGCAAGGCTATTAGAGTTCGGAGAGGATGTTGATAAACTTCTTGAAGGAATCGGAGATGACCTCGGGCTGCCTAACGACGACGAAGACGACGGAGATGAAACCTGA

Protein sequence

MGRYHSVSNFRAWLGLFSAMRILRPMKIGFPVLMSVLKEERDDVEMVAVYLFFASLFIEELNLALGLLDVLGALESLVSALTPLDHANGSRDEEAILSIPHGITRLMDIPMDCENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTMLASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVITTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGKLRQGLRLLAEAREEALKESETEVNDLHNKARLLEFGEDVDKLLEGIGDDLGLPNDDEDDGDET

Homology

[Close]

BLAST of Carg02326 vs. NCBI nr
Match: KAG7016213.1 (Golgin candidate 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 610.5 bits (1573), Expect = 8.0e-171
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0


Query: 1   MGRYHSVSNFRAWLGLFSAMRILRPMKIGFPVLMSVLKEERDDVEMVAVYLFFASLFIEE 60
           MGRYHSVSNFRAWLGLFSAMRILRPMKIGFPVLMSVLKEERDDVEMVAVYLFFASLFIEE
Sbjct: 1   MGRYHSVSNFRAWLGLFSAMRILRPMKIGFPVLMSVLKEERDDVEMVAVYLFFASLFIEE 60

Query: 61  LNLALGLLDVLGALESLVSALTPLDHANGSRDEEAILSIPHGITRLMDIPMDCENPKNID 120
           LNLALGLLDVLGALESLVSALTPLDHANGSRDEEAILSIPHGITRLMDIPMDCENPKNID
Sbjct: 61  LNLALGLLDVLGALESLVSALTPLDHANGSRDEEAILSIPHGITRLMDIPMDCENPKNID 120

Query: 121 AIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTMLASTLIPQ 180
           AIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTMLASTLIPQ
Sbjct: 121 AIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTMLASTLIPQ 180

Query: 181 PQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVITTISATMPSFGDPEPLMHRMVKY 240
           PQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVITTISATMPSFGDPEPLMHRMVKY
Sbjct: 181 PQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVITTISATMPSFGDPEPLMHRMVKY 240

Query: 241 LAVASSMKNRNGKLRQGLRLLAEAREEALKESETEVNDLHNKARLLEFGEDVDKLLEGIG 300
           LAVASSMKNRNGKLRQGLRLLAEAREEALKESETEVNDLHNKARLLEFGEDVDKLLEGIG
Sbjct: 241 LAVASSMKNRNGKLRQGLRLLAEAREEALKESETEVNDLHNKARLLEFGEDVDKLLEGIG 300

Query: 301 DDLGLPNDDEDDGDET 317
           DDLGLPNDDEDDGDET
Sbjct: 301 DDLGLPNDDEDDGDET 316

[Close]

BLAST of Carg02326 vs. NCBI nr
Match: KAA0037595.1 (golgin candidate 6 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 7.0e-58
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 114 ENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 173
           E+PKN+DAIA KLLGDNVQEPALNSILRI LRTSSTQE+FA DYVFKCFCEKNSDGQTML
Sbjct: 353 EHPKNLDAIATKLLGDNVQEPALNSILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTML 412

Query: 174 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 233
           ASTLIPQPQSMI+APLEEDVNMSFGSMLLRSLTLSEN+GDLE                  
Sbjct: 413 ASTLIPQPQSMIYAPLEEDVNMSFGSMLLRSLTLSENDGDLETCCRAASVLSHVIKNNNQ 472

Query: 234 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGK 254
                    + A MPS GDPEPLMHRMVKYLAVASSMKNRNGK
Sbjct: 473 CKERVLKIKLEAPMPSLGDPEPLMHRMVKYLAVASSMKNRNGK 515

[Close]

BLAST of Carg02326 vs. NCBI nr
Match: KAA0037595.1 (golgin candidate 6 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-08
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 244 ASSMKNRNGKLRQGLRLL-AEAREEALKESETEVNDL------------HNKARLLEFGE 303
           A +MK+    +   +  + AEAREEA KESETE+NDL               ARL+E GE
Sbjct: 830 AKAMKSGEHSISPDIEAIKAEAREEAQKESETELNDLLVCLGQEQSRVERLSARLIELGE 889

Query: 304 DVDKLLEGIGDDLGLPNDDEDD 313
           DVDKLLEGIGDDLG+P DDED+
Sbjct: 890 DVDKLLEGIGDDLGMPEDDEDE 911

HSP 2 Score: 235.3 bits (599), Expect = 7.0e-58
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 114 ENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 173
           E+PKN+DAIA KLLGDNVQEPALNSILRI LRTSSTQE+FA DYVFKCFCEKNSDGQTML
Sbjct: 352 EHPKNLDAIATKLLGDNVQEPALNSILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTML 411

Query: 174 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 233
           ASTLIPQPQSMI+APLEEDVNMSFGSMLLRSLTLSEN+GDLE                  
Sbjct: 412 ASTLIPQPQSMIYAPLEEDVNMSFGSMLLRSLTLSENDGDLETCCRAASVLSHVIKNNNQ 471

Query: 234 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGK 254
                    + A MPS GDPEPLMHRMVKYLAVASSMKNRNGK
Sbjct: 472 CKERVLKIKLEAPMPSLGDPEPLMHRMVKYLAVASSMKNRNGK 514

[Close]

BLAST of Carg02326 vs. NCBI nr
Match: XP_008458826.1 (PREDICTED: golgin candidate 6 [Cucumis melo] >XP_008458827.1 PREDICTED: golgin candidate 6 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-08
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 244 ASSMKNRNGKLRQGLRLL-AEAREEALKESETEVNDL------------HNKARLLEFGE 303
           A +MK+    +   +  + AEAREEA KESETE+NDL               ARL+E GE
Sbjct: 829 AKAMKSGEHSISPDIEAIKAEAREEAQKESETELNDLLVCLGQEQSRVERLSARLIELGE 888

Query: 304 DVDKLLEGIGDDLGLPNDDEDD 313
           DVDKLLEGIGDDLG+P DDED+
Sbjct: 889 DVDKLLEGIGDDLGMPEDDEDE 910

HSP 2 Score: 235.3 bits (599), Expect = 7.0e-58
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 114 ENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 173
           E+PKN+DAIA KLLGDNVQEPALNSILRI LRTSSTQE+FA DYVFKCFCEKNSDGQTML
Sbjct: 260 EHPKNLDAIATKLLGDNVQEPALNSILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTML 319

Query: 174 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 233
           ASTLIPQPQSMI+APLEEDVNMSFGSMLLRSLTLSEN+GDLE                  
Sbjct: 320 ASTLIPQPQSMIYAPLEEDVNMSFGSMLLRSLTLSENDGDLETCCRAASVLSHVIKNNNQ 379

Query: 234 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGK 254
                    + A MPS GDPEPLMHRMVKYLAVASSMKNRNGK
Sbjct: 380 CKERVLKIKLEAPMPSLGDPEPLMHRMVKYLAVASSMKNRNGK 422

[Close]

BLAST of Carg02326 vs. NCBI nr
Match: TYK09334.1 (golgin candidate 6 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-08
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 244 ASSMKNRNGKLRQGLRLL-AEAREEALKESETEVNDL------------HNKARLLEFGE 303
           A +MK+    +   +  + AEAREEA KESETE+NDL               ARL+E GE
Sbjct: 737 AKAMKSGEHSISPDIEAIKAEAREEAQKESETELNDLLVCLGQEQSRVERLSARLIELGE 796

Query: 304 DVDKLLEGIGDDLGLPNDDEDD 313
           DVDKLLEGIGDDLG+P DDED+
Sbjct: 797 DVDKLLEGIGDDLGMPEDDEDE 818

HSP 2 Score: 233.8 bits (595), Expect = 2.0e-57
Identity = 123/163 (75.46%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 114 ENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 173
           E+PKN+D IA KLLGDNVQEPALNSILRI LRTSSTQE+FA DYVFKCFCEKNSDGQTML
Sbjct: 237 EHPKNLDTIASKLLGDNVQEPALNSILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTML 296

Query: 174 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 233
           ASTLIPQPQSMI+APLEEDVNMSFGSMLLRSLTLSEN+GDLE                  
Sbjct: 297 ASTLIPQPQSMIYAPLEEDVNMSFGSMLLRSLTLSENDGDLETCCRAASVLSHVIKNNNQ 356

Query: 234 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGK 254
                    + A MPS GDPEPLMHRMVKYLAVASSMKNRNGK
Sbjct: 357 CKERVLKIKLEAPMPSLGDPEPLMHRMVKYLAVASSMKNRNGK 399

[Close]

BLAST of Carg02326 vs. ExPASy Swiss-Prot
Match: B0F9L4 (Golgin candidate 6 OS=Arabidopsis thaliana OX=3702 GN=GC6 PE=1 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-36
Identity = 87/160 (54.37%), Postives = 105/160 (65.62%), Query Frame = 0


Query: 115 NPKNIDAIACKLLGDNVQ-EPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 174
           +PKN D +A K+LG++ Q EPALNSILRI L+TSS QE+ A DYVFK FCEKN++GQTML
Sbjct: 352 HPKNRDILASKVLGEDRQVEPALNSILRIILQTSSIQEFVAADYVFKTFCEKNTEGQTML 411

Query: 175 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 234
           ASTLIPQP       LE+DV+MSFGSMLLR L   E +GDLE                  
Sbjct: 412 ASTLIPQPHPTSRDHLEDDVHMSFGSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLR 471

Query: 235 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNR 251
                    + + MPS G PEPL  R+V+YLAVASSMK++
Sbjct: 472 CKEKALKIVLESPMPSMGTPEPLFQRIVRYLAVASSMKSK 511

[Close]

BLAST of Carg02326 vs. ExPASy TrEMBL
Match: A0A1S3C8R8 (golgin candidate 6 OS=Cucumis melo OX=3656 GN=LOC103498116 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 114 ENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 173
           E+PKN+DAIA KLLGDNVQEPALNSILRI LRTSSTQE+FA DYVFKCFCEKNSDGQTML
Sbjct: 352 EHPKNLDAIATKLLGDNVQEPALNSILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTML 411

Query: 174 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 233
           ASTLIPQPQSMI+APLEEDVNMSFGSMLLRSLTLSEN+GDLE                  
Sbjct: 412 ASTLIPQPQSMIYAPLEEDVNMSFGSMLLRSLTLSENDGDLETCCRAASVLSHVIKNNNQ 471

Query: 234 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGK 254
                    + A MPS GDPEPLMHRMVKYLAVASSMKNRNGK
Sbjct: 472 CKERVLKIKLEAPMPSLGDPEPLMHRMVKYLAVASSMKNRNGK 514

[Close]

BLAST of Carg02326 vs. ExPASy TrEMBL
Match: A0A1S3C8R8 (golgin candidate 6 OS=Cucumis melo OX=3656 GN=LOC103498116 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 244 ASSMKNRNGKLRQGLRLL-AEAREEALKESETEVNDL------------HNKARLLEFGE 303
           A +MK+    +   +  + AEAREEA KESETE+NDL               ARL+E GE
Sbjct: 829 AKAMKSGEHSISPDIEAIKAEAREEAQKESETELNDLLVCLGQEQSRVERLSARLIELGE 888

Query: 304 DVDKLLEGIGDDLGLPNDDEDD 313
           DVDKLLEGIGDDLG+P DDED+
Sbjct: 889 DVDKLLEGIGDDLGMPEDDEDE 910

HSP 2 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 114 ENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 173
           E+PKN+DAIA KLLGDNVQEPALNSILRI LRTSSTQE+FA DYVFKCFCEKNSDGQTML
Sbjct: 353 EHPKNLDAIATKLLGDNVQEPALNSILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTML 412

Query: 174 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 233
           ASTLIPQPQSMI+APLEEDVNMSFGSMLLRSLTLSEN+GDLE                  
Sbjct: 413 ASTLIPQPQSMIYAPLEEDVNMSFGSMLLRSLTLSENDGDLETCCRAASVLSHVIKNNNQ 472

Query: 234 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGK 254
                    + A MPS GDPEPLMHRMVKYLAVASSMKNRNGK
Sbjct: 473 CKERVLKIKLEAPMPSLGDPEPLMHRMVKYLAVASSMKNRNGK 515

[Close]

BLAST of Carg02326 vs. ExPASy TrEMBL
Match: A0A5A7T816 (Golgin candidate 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002400 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 244 ASSMKNRNGKLRQGLRLL-AEAREEALKESETEVNDL------------HNKARLLEFGE 303
           A +MK+    +   +  + AEAREEA KESETE+NDL               ARL+E GE
Sbjct: 830 AKAMKSGEHSISPDIEAIKAEAREEAQKESETELNDLLVCLGQEQSRVERLSARLIELGE 889

Query: 304 DVDKLLEGIGDDLGLPNDDEDD 313
           DVDKLLEGIGDDLG+P DDED+
Sbjct: 890 DVDKLLEGIGDDLGMPEDDEDE 911

HSP 2 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 114 ENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 173
           E+PKN+DAIA KLLGDNVQEPALNSILRI LRTSSTQE+FA DYVFKCFCEKNSDGQTML
Sbjct: 260 EHPKNLDAIATKLLGDNVQEPALNSILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTML 319

Query: 174 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 233
           ASTLIPQPQSMI+APLEEDVNMSFGSMLLRSLTLSEN+GDLE                  
Sbjct: 320 ASTLIPQPQSMIYAPLEEDVNMSFGSMLLRSLTLSENDGDLETCCRAASVLSHVIKNNNQ 379

Query: 234 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGK 254
                    + A MPS GDPEPLMHRMVKYLAVASSMKNRNGK
Sbjct: 380 CKERVLKIKLEAPMPSLGDPEPLMHRMVKYLAVASSMKNRNGK 422

[Close]

BLAST of Carg02326 vs. ExPASy TrEMBL
Match: A0A5D3CDR6 (Golgin candidate 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00130 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 244 ASSMKNRNGKLRQGLRLL-AEAREEALKESETEVNDL------------HNKARLLEFGE 303
           A +MK+    +   +  + AEAREEA KESETE+NDL               ARL+E GE
Sbjct: 737 AKAMKSGEHSISPDIEAIKAEAREEAQKESETELNDLLVCLGQEQSRVERLSARLIELGE 796

Query: 304 DVDKLLEGIGDDLGLPNDDEDD 313
           DVDKLLEGIGDDLG+P DDED+
Sbjct: 797 DVDKLLEGIGDDLGMPEDDEDE 818

HSP 2 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 172/443 (38.83%), Postives = 186/443 (41.99%), Query Frame = 0


Query: 28  IGFPVLMSVLKEERDDVEMVAVYLFFASLFIEELNLALGLLDVLGALESLVSALTPLDHA 87
           +GFPVLMSVLKEERDDVEMV                        GALE+LVSALTP++HA
Sbjct: 68  MGFPVLMSVLKEERDDVEMVR-----------------------GALETLVSALTPINHA 127

Query: 88  NGSRDE-------------------------EAILSIPHGITRLMDIPMD---------- 147
            GS+D+                         EAILSIP GITRLMD+ MD          
Sbjct: 128 KGSKDQVQPALMNSDLLSRESDSISLLLSLLEAILSIPRGITRLMDMLMDREVIRNEALL 187

Query: 148 ------------------------------------------------------------ 207
                                                                       
Sbjct: 188 LLTYLTREAEEIQKIVVFEGAFEKVFSIIKEEGGSDGGVVVQDCLELLSNLLRKNASNQV 247

Query: 208 ------------------------------------------------------------ 254
                                                                       
Sbjct: 248 LLRETIGFDPLISILKSRGSTYSFTQQKTVNLLSALETLNLLIMGDPKVDPAKDGNKLTN 307

[Close]

BLAST of Carg02326 vs. ExPASy TrEMBL
Match: A0A6J1JTL6 (golgin candidate 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487730 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 262 AEAREEALKESETEVNDL------------HNKARLLEFGEDVDKLLEGIGDDLGLPND- 316
           AEAREEA KESETE+NDL               ARL+E GEDVD LLEGIGDDLGLP + 
Sbjct: 821 AEAREEAQKESETELNDLLVCLGQEQSKVERLSARLMELGEDVDTLLEGIGDDLGLPEEV 880

HSP 2 Score: 230.7 bits (587), Expect = 8.4e-57
Identity = 122/163 (74.85%), Postives = 128/163 (78.53%), Query Frame = 0


Query: 114 ENPKNIDAIACKLLGDNVQEPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 173
           E+PKN+DAIA K LGD+VQEPALNSILRI LRTSSTQE+FA DYVFKCFCEKNSDGQTML
Sbjct: 352 EHPKNLDAIASKFLGDDVQEPALNSILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTML 411

Query: 174 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 233
           ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSEN+GDLE                  
Sbjct: 412 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENDGDLETCCRAASVLSHVIKNNSQ 471

Query: 234 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNRNGK 254
                    + A M S GDPEPLMHRMVKYLAVASSMKNRNGK
Sbjct: 472 CKERVLKIKLEAPMHSLGDPEPLMHRMVKYLAVASSMKNRNGK 514

[Close]

BLAST of Carg02326 vs. TAIR 10
Match: AT3G27530.1 (golgin candidate 6 )

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-37
Identity = 87/160 (54.37%), Postives = 105/160 (65.62%), Query Frame = 0


Query: 115 NPKNIDAIACKLLGDNVQ-EPALNSILRITLRTSSTQEYFAVDYVFKCFCEKNSDGQTML 174
           +PKN D +A K+LG++ Q EPALNSILRI L+TSS QE+ A DYVFK FCEKN++GQTML
Sbjct: 352 HPKNRDILASKVLGEDRQVEPALNSILRIILQTSSIQEFVAADYVFKTFCEKNTEGQTML 411

Query: 175 ASTLIPQPQSMIHAPLEEDVNMSFGSMLLRSLTLSENNGDLEVI---------------- 234
           ASTLIPQP       LE+DV+MSFGSMLLR L   E +GDLE                  
Sbjct: 412 ASTLIPQPHPTSRDHLEDDVHMSFGSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLR 471

Query: 235 -------TTISATMPSFGDPEPLMHRMVKYLAVASSMKNR 251
                    + + MPS G PEPL  R+V+YLAVASSMK++
Sbjct: 472 CKEKALKIVLESPMPSMGTPEPLFQRIVRYLAVASSMKSK 511

The following BLAST results are available for this feature:

BLAST of Carg02326 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016213.1	8.0e-171	100.00	Golgin candidate 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0037595.1	7.0e-58	76.07	golgin candidate 6 [Cucumis melo var. makuwa]	[more]
KAA0037595.1	3.9e-08	53.66	golgin candidate 6 [Cucumis melo var. makuwa]	[more]
XP_008458826.1	3.9e-08	53.66	PREDICTED: golgin candidate 6 [Cucumis melo] >XP_008458827.1 PREDICTED: golgin c...	[more]
TYK09334.1	3.9e-08	53.66	golgin candidate 6 [Cucumis melo var. makuwa]	[more]

Pages

BLAST of Carg02326 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0F9L4	2.7e-36	54.38	Golgin candidate 6 OS=Arabidopsis thaliana OX=3702 GN=GC6 PE=1 SV=2	[more]

BLAST of Carg02326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8R8	3.4e-58	76.07	golgin candidate 6 OS=Cucumis melo OX=3656 GN=LOC103498116 PE=4 SV=1	[more]
A0A1S3C8R8	1.9e-08	53.66	golgin candidate 6 OS=Cucumis melo OX=3656 GN=LOC103498116 PE=4 SV=1	[more]
A0A5A7T816	1.9e-08	53.66	Golgin candidate 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G0...	[more]
A0A5D3CDR6	1.9e-08	53.66	Golgin candidate 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G0...	[more]
A0A6J1JTL6	1.8e-06	61.19	golgin candidate 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487730 PE=4 S...	[more]

Pages

BLAST of Carg02326 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27530.1	1.9e-37	54.38	golgin candidate 6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 262..282
None	No IPR available	PANTHER	PTHR10013	GENERAL VESICULAR TRANSPORT FACTOR P115	coord: 115..246
None	No IPR available	PANTHER	PTHR10013:SF6	BNACNNG51860D PROTEIN	coord: 115..246
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 114..263 e-value: 5.9E-16 score: 60.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02326-RA	Carg02326-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0048280	vesicle fusion with Golgi apparatus
cellular_component	GO:0000139	Golgi membrane